Wall clock time and date at job start Sat Apr 11 2020 06:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46984 * 2 1 4 4 H 1.08999 * 109.46988 * 305.00339 * 3 2 1 5 5 C 1.50694 * 109.47174 * 185.00007 * 3 2 1 6 6 H 1.07996 * 120.00613 * 240.00088 * 5 3 2 7 7 C 1.37882 * 119.99647 * 60.00349 * 5 3 2 8 8 N 1.31510 * 120.00378 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99802 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47171 * 59.99847 * 9 7 5 11 11 H 1.48495 * 109.47185 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46957 * 300.00102 * 9 7 5 13 13 N 1.46500 * 109.46751 * 65.00263 * 3 2 1 14 14 C 1.34779 * 119.99941 * 274.99452 * 13 3 2 15 15 O 1.21276 * 120.00142 * 0.02562 * 14 13 3 16 16 C 1.50699 * 119.99747 * 180.02562 * 14 13 3 17 17 H 1.08996 * 110.43675 * 28.72079 * 16 14 13 18 18 C 1.54893 * 110.48411 * 151.25911 * 16 14 13 19 19 C 1.55245 * 102.58797 * 156.67509 * 18 16 14 20 20 C 1.54265 * 104.23234 * 322.08775 * 19 18 16 21 21 C 1.53881 * 106.59670 * 23.60777 * 20 19 18 22 22 H 1.09004 * 110.06941 * 119.31088 * 21 20 19 23 23 N 1.46500 * 110.02944 * 240.71388 * 21 20 19 24 24 C 1.34781 * 120.00385 * 266.96718 * 23 21 20 25 25 O 1.21515 * 119.99512 * 0.02562 * 24 23 21 26 26 O 1.34631 * 120.00362 * 180.02562 * 24 23 21 27 27 C 1.45199 * 117.00201 * 180.02562 * 26 24 23 28 28 C 1.52995 * 109.47050 * 59.99881 * 27 26 24 29 29 C 1.52998 * 109.47151 * 180.02562 * 27 26 24 30 30 C 1.53004 * 109.46971 * 299.99941 * 27 26 24 31 31 H 1.08997 * 109.47113 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47163 * 299.99908 * 1 2 3 33 33 H 1.09000 * 109.47383 * 59.99573 * 1 2 3 34 34 H 1.08994 * 109.46968 * 240.00518 * 2 1 3 35 35 H 1.08991 * 109.47406 * 120.00110 * 2 1 3 36 36 H 0.96994 * 120.00197 * 179.97438 * 8 7 5 37 37 H 0.96999 * 120.00191 * 95.00445 * 13 3 2 38 38 H 1.09000 * 110.75816 * 275.06620 * 18 16 14 39 39 H 1.09004 * 110.75571 * 38.44148 * 18 16 14 40 40 H 1.08995 * 110.47156 * 203.39633 * 19 18 16 41 41 H 1.09000 * 110.57807 * 80.83259 * 19 18 16 42 42 H 1.09003 * 110.02863 * 264.32439 * 20 19 18 43 43 H 1.08997 * 110.03352 * 142.88823 * 20 19 18 44 44 H 0.96999 * 120.00048 * 86.97499 * 23 21 20 45 45 H 1.09005 * 109.46955 * 60.00520 * 28 27 26 46 46 H 1.08999 * 109.47108 * 179.97438 * 28 27 26 47 47 H 1.08999 * 109.47576 * 300.00119 * 28 27 26 48 48 H 1.09003 * 109.47527 * 59.99844 * 29 27 26 49 49 H 1.08999 * 109.47393 * 180.02562 * 29 27 26 50 50 H 1.08998 * 109.46873 * 299.99839 * 29 27 26 51 51 H 1.09001 * 109.46536 * 59.99972 * 30 27 26 52 52 H 1.08996 * 109.47125 * 179.97438 * 30 27 26 53 53 H 1.08993 * 109.47245 * 299.99962 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1472 1.8889 0.6522 7 6 4.1432 0.8785 -1.2281 8 7 3.4062 0.3368 -2.1729 9 14 6.0049 0.8802 -1.3813 10 1 6.5966 0.1453 -0.2345 11 1 6.3978 0.2159 -2.6499 12 1 6.5004 2.2801 -1.3808 13 7 1.6524 2.0974 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3396 2.6320 0.4345 16 6 0.0367 3.3385 2.6546 17 1 0.9155 3.7295 3.1672 18 6 -0.9805 4.4738 2.3798 19 6 -1.7059 4.6159 3.7450 20 6 -1.8345 3.1670 4.2587 21 6 -0.7265 2.3548 3.5654 22 1 -0.0504 1.9334 4.3093 23 7 -1.3186 1.2827 2.7615 24 6 -1.4848 0.0552 3.2927 25 8 -1.1439 -0.1621 4.4386 26 8 -2.0284 -0.9302 2.5537 27 6 -2.1777 -2.2263 3.1908 28 6 -3.0783 -2.0896 4.4201 29 6 -2.8077 -3.2105 2.2033 30 6 -0.8037 -2.7447 3.6203 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.8933 -0.5137 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.8292 -0.0610 -2.9499 37 1 2.2719 2.1231 1.9978 38 1 -0.4661 5.3976 2.1149 39 1 -1.6820 4.1830 1.5979 40 1 -2.6914 5.0611 3.6085 41 1 -1.1104 5.2138 4.4349 42 1 -2.8127 2.7635 3.9970 43 1 -1.6961 3.1404 5.3396 44 1 -1.5909 1.4563 1.8468 45 1 -4.0572 -1.7203 4.1140 46 1 -3.1907 -3.0627 4.8981 47 1 -2.6291 -1.3886 5.1235 48 1 -2.1657 -3.3078 1.3277 49 1 -2.9202 -4.1834 2.6817 50 1 -3.7864 -2.8414 1.8969 51 1 -0.3546 -2.0436 4.3237 52 1 -0.9158 -3.7175 4.0990 53 1 -0.1621 -2.8421 2.7446 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000248402033.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:55 Heat of formation + Delta-G solvation = -155.253672 kcal Electronic energy + Delta-G solvation = -33002.370933 eV Core-core repulsion = 28872.676370 eV Total energy + Delta-G solvation = -4129.694563 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.06191 -41.08432 -39.02820 -37.68424 -36.74812 -35.33905 -34.29261 -34.22215 -32.85288 -30.31855 -28.87160 -28.59326 -28.33870 -28.28745 -25.15157 -23.92585 -22.89917 -21.57825 -21.41301 -21.08109 -20.69086 -19.35346 -18.91805 -17.80839 -17.37030 -17.20949 -17.12498 -16.49146 -16.31660 -16.12873 -15.64888 -15.42847 -15.30635 -14.98935 -14.60732 -14.42907 -14.33678 -14.03487 -13.57632 -13.47151 -13.33747 -13.18814 -13.07461 -12.94473 -12.87954 -12.84701 -12.67404 -12.56883 -12.45138 -12.27761 -12.24661 -12.18509 -12.12517 -11.99923 -11.87710 -11.55604 -11.44867 -11.34654 -11.07707 -11.05580 -10.61556 -10.47022 -10.14503 -9.61410 -8.16420 -6.33657 1.22713 1.43266 1.44679 1.52393 1.77307 1.82780 2.35381 2.65762 3.12648 3.15825 3.52124 3.54376 3.77140 3.82347 3.94586 3.96842 4.30443 4.32588 4.41865 4.45636 4.48493 4.51493 4.57809 4.59971 4.63211 4.71601 4.77468 4.77684 4.78429 4.84965 4.88466 4.93577 5.07411 5.08670 5.12084 5.22995 5.25052 5.28096 5.30692 5.32810 5.41465 5.43435 5.51688 5.56119 5.60026 5.63934 5.78992 5.92382 6.16530 6.37725 6.74357 7.00395 7.32958 7.34852 7.58402 8.88375 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009735 B = 0.004374 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2875.676108 B = 6400.550892 C = 8415.150103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.114 4.114 3 C 0.282 3.718 4 H 0.001 0.999 5 C -0.550 4.550 6 H 0.069 0.931 7 C 0.017 3.983 8 N -0.913 5.913 9 Si 0.967 3.033 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.270 1.270 13 N -0.704 5.704 14 C 0.509 3.491 15 O -0.582 6.582 16 C -0.120 4.120 17 H 0.132 0.868 18 C -0.108 4.108 19 C -0.109 4.109 20 C -0.127 4.127 21 C 0.168 3.832 22 H 0.099 0.901 23 N -0.705 5.705 24 C 0.650 3.350 25 O -0.587 6.587 26 O -0.374 6.374 27 C 0.123 3.877 28 C -0.173 4.173 29 C -0.138 4.138 30 C -0.179 4.179 31 H 0.031 0.969 32 H 0.067 0.933 33 H 0.025 0.975 34 H 0.068 0.932 35 H 0.026 0.974 36 H 0.264 0.736 37 H 0.400 0.600 38 H 0.083 0.917 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.064 0.936 43 H 0.090 0.910 44 H 0.409 0.591 45 H 0.062 0.938 46 H 0.093 0.907 47 H 0.066 0.934 48 H 0.056 0.944 49 H 0.107 0.893 50 H 0.071 0.929 51 H 0.065 0.935 52 H 0.094 0.906 53 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.820 0.890 15.343 19.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.153 4.153 3 C 0.178 3.822 4 H 0.019 0.981 5 C -0.588 4.588 6 H 0.087 0.913 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.792 3.208 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.195 1.195 13 N -0.352 5.352 14 C 0.296 3.704 15 O -0.463 6.463 16 C -0.142 4.142 17 H 0.150 0.850 18 C -0.146 4.146 19 C -0.146 4.146 20 C -0.166 4.166 21 C 0.064 3.936 22 H 0.117 0.883 23 N -0.367 5.367 24 C 0.404 3.596 25 O -0.478 6.478 26 O -0.289 6.289 27 C 0.087 3.913 28 C -0.230 4.230 29 C -0.195 4.195 30 C -0.236 4.236 31 H 0.050 0.950 32 H 0.085 0.915 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.045 0.955 36 H 0.073 0.927 37 H 0.234 0.766 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.110 0.890 42 H 0.083 0.917 43 H 0.108 0.892 44 H 0.247 0.753 45 H 0.081 0.919 46 H 0.111 0.889 47 H 0.085 0.915 48 H 0.075 0.925 49 H 0.125 0.875 50 H 0.090 0.910 51 H 0.084 0.916 52 H 0.113 0.887 53 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.189 0.567 15.042 19.368 hybrid contribution 1.319 -0.249 -0.872 1.601 sum -10.870 0.318 14.169 17.861 Atomic orbital electron populations 1.21833 0.96708 0.98847 1.01243 1.21706 0.93996 0.99306 1.00333 1.18300 0.93439 0.88903 0.81545 0.98067 1.21562 0.91651 1.39008 1.06610 0.91258 1.25735 1.03115 0.94373 0.95070 1.70037 1.37041 1.38270 1.09817 0.85479 0.79383 0.78508 0.77456 1.19254 1.21174 1.19476 1.46363 1.15803 1.55714 1.17295 1.20861 0.81543 0.78281 0.89731 1.90636 1.52102 1.61393 1.42209 1.22669 1.01572 0.96988 0.92988 0.85020 1.22535 0.96743 0.96537 0.98775 1.22384 1.01548 0.95496 0.95213 1.22594 0.97514 0.95496 1.00978 1.21681 0.95163 0.85210 0.91533 0.88281 1.45369 1.65449 1.07626 1.18293 1.18184 0.76735 0.81672 0.83003 1.90839 1.56241 1.82705 1.18024 1.86369 1.75687 1.21138 1.45696 1.22401 0.96535 0.78232 0.94102 1.22428 0.98964 1.04528 0.97127 1.21897 1.01072 0.98005 0.98525 1.22464 0.95998 1.03158 1.01998 0.94975 0.91455 0.95572 0.91409 0.95536 0.92660 0.76628 0.89884 0.91871 0.90021 0.88951 0.91742 0.89155 0.75256 0.91856 0.88854 0.91487 0.92495 0.87484 0.91040 0.91611 0.88694 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.90 8.51 71.98 0.61 -5.28 16 2 C -0.11 -5.76 5.45 30.60 0.17 -5.60 16 3 C 0.28 14.36 2.24 44.24 0.10 14.46 16 4 H 0.00 0.09 7.58 -2.39 -0.02 0.07 16 5 C -0.55 -29.17 8.73 25.60 0.22 -28.95 16 6 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 7 C 0.02 0.94 5.29 84.66 0.45 1.38 16 8 N -0.91 -52.48 11.29 21.45 0.24 -52.24 16 9 Si 0.97 42.30 29.54 68.60 2.03 44.33 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 11 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 12 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 13 N -0.70 -28.43 5.02 -446.11 -2.24 -30.67 16 14 C 0.51 18.57 4.65 87.66 0.41 18.98 16 15 O -0.58 -25.20 11.89 -3.02 -0.04 -25.24 16 16 C -0.12 -3.02 3.20 -10.47 -0.03 -3.05 16 17 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 18 C -0.11 -2.35 6.23 32.01 0.20 -2.15 16 19 C -0.11 -1.68 6.84 31.79 0.22 -1.46 16 20 C -0.13 -2.40 6.60 31.32 0.21 -2.19 16 21 C 0.17 4.15 3.20 45.72 0.15 4.30 16 22 H 0.10 2.51 7.41 -2.38 -0.02 2.49 16 23 N -0.71 -21.52 3.29 -566.65 -1.86 -23.38 16 24 C 0.65 21.24 7.70 129.79 1.00 22.24 16 25 O -0.59 -19.87 11.45 19.79 0.23 -19.65 16 26 O -0.37 -11.96 9.94 -55.40 -0.55 -12.51 16 27 C 0.12 3.13 1.13 -10.79 -0.01 3.12 16 28 C -0.17 -3.76 8.37 71.98 0.60 -3.16 16 29 C -0.14 -2.76 8.85 71.98 0.64 -2.13 16 30 C -0.18 -4.70 8.37 71.98 0.60 -4.10 16 31 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.07 2.80 2.81 -2.38 -0.01 2.80 16 33 H 0.03 1.27 7.85 -2.39 -0.02 1.25 16 34 H 0.07 3.83 5.95 -2.39 -0.01 3.82 16 35 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 37 H 0.40 14.11 8.54 -92.71 -0.79 13.32 16 38 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 39 H 0.06 1.69 7.28 -2.39 -0.02 1.67 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.06 1.34 7.92 -2.39 -0.02 1.32 16 43 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.41 13.88 5.66 -92.71 -0.53 13.35 16 45 H 0.06 1.28 8.14 -2.38 -0.02 1.27 16 46 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.07 1.76 5.88 -2.39 -0.01 1.75 16 48 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 50 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 51 H 0.06 2.03 5.88 -2.39 -0.01 2.01 16 52 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 53 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -67.54 401.89 2.93 -64.61 By element: Atomic # 1 Polarization: 48.73 SS G_CDS: -0.40 Total: 48.33 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 5.52 Total: 6.41 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -3.86 Total: -106.28 kcal Atomic # 8 Polarization: -57.04 SS G_CDS: -0.36 Total: -57.40 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -67.54 2.93 -64.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248402033.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.640 kcal (2) G-P(sol) polarization free energy of solvation -67.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds