Wall clock time and date at job start Sat Apr 11 2020 06:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47317 * 2 1 4 4 H 1.09003 * 109.46754 * 54.99946 * 3 2 1 5 5 C 1.52997 * 109.47037 * 295.00251 * 3 2 1 6 6 C 1.50691 * 109.47124 * 174.99825 * 3 2 1 7 7 O 1.21284 * 120.00316 * 16.45476 * 6 3 2 8 8 N 1.34778 * 120.00256 * 196.17055 * 6 3 2 9 9 C 1.46924 * 120.62823 * 354.15337 * 8 6 3 10 10 C 1.53191 * 108.77712 * 126.36483 * 9 8 6 11 11 C 1.53042 * 109.31085 * 54.63464 * 10 9 8 12 12 C 1.53039 * 109.53788 * 298.63251 * 11 10 9 13 13 H 1.09001 * 109.49518 * 301.41785 * 12 11 10 14 14 C 1.50700 * 109.49527 * 181.35292 * 12 11 10 15 15 O 1.21291 * 119.99387 * 252.88903 * 14 12 11 16 16 N 1.34770 * 120.00520 * 72.89215 * 14 12 11 17 17 C 1.37103 * 119.99453 * 356.23490 * 16 14 12 18 18 H 1.08002 * 119.99969 * 240.84998 * 17 16 14 19 19 C 1.38945 * 120.00118 * 60.85800 * 17 16 14 20 20 N 1.31417 * 120.00109 * 15.01423 * 19 17 16 21 21 Si 1.86802 * 120.00062 * 195.01572 * 19 17 16 22 22 H 1.48497 * 109.47206 * 90.00063 * 21 19 17 23 23 H 1.48508 * 109.47125 * 210.00080 * 21 19 17 24 24 H 1.48497 * 109.47220 * 329.99526 * 21 19 17 25 25 C 1.46495 * 120.00343 * 176.23547 * 16 14 12 26 26 C 1.53005 * 109.46824 * 93.27236 * 25 16 14 27 27 O 1.42895 * 109.47362 * 65.00178 * 26 25 16 28 28 C 1.42904 * 113.99981 * 179.97438 * 27 26 25 29 29 C 1.46922 * 120.63302 * 173.86915 * 8 6 3 30 30 H 1.08993 * 109.46949 * 59.99923 * 1 2 3 31 31 H 1.08998 * 109.47502 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46835 * 300.00112 * 1 2 3 33 33 H 1.09000 * 109.46835 * 239.99888 * 2 1 3 34 34 H 1.09005 * 109.46731 * 120.00309 * 2 1 3 35 35 H 1.09001 * 109.46821 * 185.52715 * 5 3 2 36 36 H 1.09001 * 109.47371 * 305.52689 * 5 3 2 37 37 H 1.09002 * 109.47251 * 65.52490 * 5 3 2 38 38 H 1.09001 * 109.58734 * 246.15497 * 9 8 6 39 39 H 1.08998 * 109.59058 * 6.57598 * 9 8 6 40 40 H 1.09008 * 109.49748 * 174.58682 * 10 9 8 41 41 H 1.08993 * 109.49933 * 294.64842 * 10 9 8 42 42 H 1.09001 * 109.46283 * 58.65681 * 11 10 9 43 43 H 1.09004 * 109.45528 * 178.61167 * 11 10 9 44 44 H 0.96999 * 119.99832 * 180.02562 * 20 19 17 45 45 H 1.09003 * 109.47137 * 213.26865 * 25 16 14 46 46 H 1.08997 * 109.47254 * 333.27266 * 25 16 14 47 47 H 1.09002 * 109.46502 * 185.00460 * 26 25 16 48 48 H 1.09005 * 109.47020 * 304.99590 * 26 25 16 49 49 H 1.09000 * 109.47078 * 179.97438 * 28 27 26 50 50 H 1.08993 * 109.47115 * 300.00208 * 28 27 26 51 51 H 1.09005 * 109.46675 * 59.99823 * 28 27 26 52 52 H 1.09001 * 109.59021 * 353.42015 * 29 8 6 53 53 H 1.08999 * 109.58992 * 113.84589 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5419 1.4442 0.1239 7 8 4.1696 0.4294 -0.0934 8 7 4.1882 2.5750 0.4705 9 6 3.4583 3.8428 0.6062 10 6 3.7494 4.4339 1.9891 11 6 5.2631 4.5567 2.1786 12 6 5.9027 3.1685 2.1022 13 1 5.4714 2.5265 2.8702 14 6 7.3889 3.2868 2.3220 15 8 8.1527 3.1458 1.3904 16 7 7.8694 3.5493 3.5535 17 6 7.0044 3.7851 4.5907 18 1 7.0264 4.7334 5.1073 19 6 6.0996 2.8042 4.9775 20 7 6.2573 1.5659 4.5666 21 14 4.6588 3.2454 6.0816 22 1 3.4961 3.6375 5.2452 23 1 4.2957 2.0709 6.9147 24 1 5.0393 4.3785 6.9628 25 6 9.3157 3.5827 3.7838 26 6 9.8224 5.0189 3.6371 27 8 9.2567 5.8313 4.6676 28 6 9.6684 7.1990 4.6215 29 6 5.6350 2.5620 0.7260 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.0811 3.1202 -1.3505 36 1 1.9868 1.5335 -2.1517 37 1 0.5496 2.2131 -1.3511 38 1 3.7879 4.5386 -0.1654 39 1 2.3884 3.6612 0.5043 40 1 3.2917 5.4202 2.0669 41 1 3.3379 3.7803 2.7581 42 1 5.6769 5.1909 1.3946 43 1 5.4723 5.0000 3.1522 44 1 5.6254 0.8812 4.8363 45 1 9.5319 3.2221 4.7895 46 1 9.8147 2.9451 3.0541 47 1 10.9092 5.0310 3.7203 48 1 9.5283 5.4103 2.6632 49 1 9.1956 7.7484 5.4355 50 1 10.7519 7.2559 4.7253 51 1 9.3713 7.6358 3.6680 52 1 6.0010 1.5355 0.7032 53 1 6.1459 3.1512 -0.0356 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457180921.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:05 Heat of formation + Delta-G solvation = -126.129648 kcal Electronic energy + Delta-G solvation = -32588.049206 eV Core-core repulsion = 28459.617556 eV Total energy + Delta-G solvation = -4128.431651 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.18152 -38.84666 -37.30095 -36.50679 -35.35284 -34.57725 -32.62332 -31.83842 -30.73006 -29.63174 -28.85835 -25.97738 -25.75004 -24.77842 -24.39255 -23.62424 -21.70945 -21.55629 -20.14214 -19.04575 -18.46747 -17.15759 -16.58685 -16.04079 -15.75241 -15.62682 -15.28882 -15.04029 -14.77656 -14.44392 -14.38548 -14.05252 -13.93335 -13.70807 -13.57637 -13.35938 -13.13386 -12.65173 -12.51338 -12.33299 -12.20307 -12.12647 -11.98310 -11.70385 -11.54171 -11.36332 -11.27482 -11.16418 -11.11372 -10.92825 -10.85273 -10.73017 -10.70119 -10.52825 -10.50679 -10.29116 -10.15106 -9.85592 -9.29594 -9.14677 -8.80511 -8.24206 -8.10554 -7.17983 -6.34463 -4.23628 2.97038 3.10902 3.21029 3.23319 3.33977 4.02671 4.14596 4.40245 4.61766 4.74297 4.83897 4.92836 4.94078 5.08768 5.27041 5.30410 5.33840 5.42533 5.43041 5.55517 5.56022 5.62995 5.70813 5.73723 5.80226 5.84118 5.85620 5.89183 5.92197 5.95060 5.99095 6.03132 6.10491 6.13034 6.23569 6.30843 6.34031 6.37996 6.43097 6.52529 6.65927 6.71182 6.81017 6.98720 7.07467 7.30285 7.55269 7.72603 7.81601 8.09970 8.54994 8.70266 8.98752 9.59997 10.03751 10.69214 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014284 B = 0.003763 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.811829 B = 7438.199041 C = 8074.247005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C -0.112 4.112 4 H 0.092 0.908 5 C -0.145 4.145 6 C 0.516 3.484 7 O -0.542 6.542 8 N -0.607 5.607 9 C 0.104 3.896 10 C -0.135 4.135 11 C -0.105 4.105 12 C -0.111 4.111 13 H 0.127 0.873 14 C 0.525 3.475 15 O -0.613 6.613 16 N -0.444 5.444 17 C -0.326 4.326 18 H 0.089 0.911 19 C 0.051 3.949 20 N -0.860 5.860 21 Si 0.899 3.101 22 H -0.271 1.271 23 H -0.285 1.285 24 H -0.267 1.267 25 C 0.115 3.885 26 C 0.054 3.946 27 O -0.369 6.369 28 C 0.032 3.968 29 C 0.133 3.867 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.050 0.950 43 H 0.090 0.910 44 H 0.270 0.730 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.040 0.960 48 H 0.044 0.956 49 H 0.078 0.922 50 H 0.031 0.969 51 H 0.033 0.967 52 H 0.088 0.912 53 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.689 6.454 -5.101 11.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.144 4.144 3 C -0.133 4.133 4 H 0.110 0.890 5 C -0.202 4.202 6 C 0.304 3.696 7 O -0.419 6.419 8 N -0.339 5.339 9 C -0.019 4.019 10 C -0.173 4.173 11 C -0.142 4.142 12 C -0.133 4.133 13 H 0.144 0.856 14 C 0.315 3.685 15 O -0.499 6.499 16 N -0.164 5.164 17 C -0.455 4.455 18 H 0.107 0.893 19 C -0.155 4.155 20 N -0.495 5.495 21 Si 0.725 3.275 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.191 1.191 25 C -0.009 4.009 26 C -0.024 4.024 27 O -0.288 6.288 28 C -0.066 4.066 29 C 0.011 3.989 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.108 0.892 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.058 0.942 48 H 0.063 0.937 49 H 0.097 0.903 50 H 0.049 0.951 51 H 0.051 0.949 52 H 0.106 0.894 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.150 5.570 -5.484 11.292 hybrid contribution -0.474 0.342 0.669 0.889 sum -8.624 5.912 -4.815 11.511 Atomic orbital electron populations 1.21827 0.95676 1.01693 1.01698 1.21350 0.95105 0.94402 1.03510 1.21347 0.92572 0.99115 1.00270 0.88977 1.21864 1.01784 1.00581 0.95997 1.20582 0.89783 0.82800 0.76445 1.90678 1.68780 1.32559 1.49893 1.48137 1.09587 1.08281 1.67911 1.21857 0.96487 0.85525 0.98013 1.21966 0.98139 1.00790 0.96452 1.21410 0.93054 0.96411 1.03370 1.21500 0.94853 0.98600 0.98341 0.85607 1.20194 0.89451 0.76637 0.82239 1.90499 1.60206 1.56566 1.42639 1.43093 1.03050 1.63290 1.06932 1.19317 1.13440 0.99912 1.12811 0.89345 1.25687 0.99416 0.94410 0.96028 1.69967 1.35393 1.00288 1.43874 0.86372 0.82075 0.78524 0.80507 1.19688 1.21017 1.19085 1.21418 0.85480 0.92468 1.01505 1.23028 0.95467 0.93411 0.90472 1.88083 1.70422 1.18476 1.51782 1.22646 0.98250 0.84666 1.01001 1.21343 0.78004 1.03021 0.96573 0.92565 0.92619 0.92789 0.91094 0.91414 0.91959 0.92009 0.91455 0.91489 0.90009 0.91090 0.91465 0.93102 0.89192 0.92019 0.90899 0.90595 0.94231 0.93724 0.90334 0.95091 0.94852 0.89363 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.67 37.16 0.36 -1.06 16 2 C -0.11 -1.32 4.74 -26.73 -0.13 -1.45 16 3 C -0.11 -1.43 1.86 -91.78 -0.17 -1.60 16 4 H 0.09 1.07 7.07 -51.93 -0.37 0.70 16 5 C -0.14 -1.47 8.41 37.16 0.31 -1.15 16 6 C 0.52 9.14 6.90 -10.99 -0.08 9.07 16 7 O -0.54 -11.81 15.54 5.55 0.09 -11.72 16 8 N -0.61 -10.64 2.98 -173.04 -0.52 -11.15 16 9 C 0.10 1.41 5.35 -3.71 -0.02 1.39 16 10 C -0.14 -2.03 6.08 -26.61 -0.16 -2.20 16 11 C -0.10 -1.95 5.03 -26.69 -0.13 -2.09 16 12 C -0.11 -2.47 1.81 -91.87 -0.17 -2.64 16 13 H 0.13 3.11 4.64 -51.93 -0.24 2.87 16 14 C 0.53 13.14 6.51 -10.99 -0.07 13.07 16 15 O -0.61 -16.41 15.44 5.55 0.09 -16.32 16 16 N -0.44 -10.91 2.33 -114.81 -0.27 -11.18 16 17 C -0.33 -8.04 6.51 -14.93 -0.10 -8.13 16 18 H 0.09 2.21 7.22 -52.49 -0.38 1.83 16 19 C 0.05 1.24 3.68 -17.47 -0.06 1.18 16 20 N -0.86 -22.77 11.73 55.50 0.65 -22.12 16 21 Si 0.90 19.07 29.58 -169.99 -5.03 14.04 16 22 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 C 0.12 2.55 5.84 -4.04 -0.02 2.52 16 26 C 0.05 1.02 6.28 37.16 0.23 1.26 16 27 O -0.37 -7.10 9.54 -35.23 -0.34 -7.43 16 28 C 0.03 0.45 11.01 101.05 1.11 1.56 16 29 C 0.13 2.81 5.17 -3.93 -0.02 2.79 16 30 H 0.06 0.46 6.69 -51.93 -0.35 0.11 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.60 6.33 -51.93 -0.33 0.27 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.53 6.84 -51.93 -0.36 0.18 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.88 4.81 -51.93 -0.25 0.63 16 40 H 0.07 0.87 8.14 -51.92 -0.42 0.44 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.09 1.80 6.43 -51.93 -0.33 1.47 16 44 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 45 H 0.07 1.61 8.07 -51.93 -0.42 1.20 16 46 H 0.08 1.70 7.38 -51.93 -0.38 1.32 16 47 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 50 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 51 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 52 H 0.09 2.15 7.05 -51.93 -0.37 1.78 16 53 H 0.07 1.40 7.77 -51.93 -0.40 0.99 16 LS Contribution 405.85 15.07 6.12 6.12 Total: -1.00 -31.13 405.85 -7.55 -38.67 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -9.22 Total: 8.56 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: 0.89 Total: 12.52 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: -0.13 Total: -44.44 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -0.16 Total: -35.47 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.13 -7.55 -38.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457180921.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.455 kcal (2) G-P(sol) polarization free energy of solvation -31.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds