Wall clock time and date at job start Sat Apr 11 2020 06:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47317 * 2 1 4 4 H 1.09003 * 109.46754 * 54.99946 * 3 2 1 5 5 C 1.52997 * 109.47037 * 295.00251 * 3 2 1 6 6 C 1.50691 * 109.47124 * 174.99825 * 3 2 1 7 7 O 1.21284 * 120.00316 * 16.45476 * 6 3 2 8 8 N 1.34778 * 120.00256 * 196.17055 * 6 3 2 9 9 C 1.46924 * 120.62823 * 354.15337 * 8 6 3 10 10 C 1.53191 * 108.77712 * 126.36483 * 9 8 6 11 11 C 1.53042 * 109.31085 * 54.63464 * 10 9 8 12 12 C 1.53039 * 109.53788 * 298.63251 * 11 10 9 13 13 H 1.09001 * 109.49518 * 301.41785 * 12 11 10 14 14 C 1.50700 * 109.49527 * 181.35292 * 12 11 10 15 15 O 1.21291 * 119.99387 * 252.88903 * 14 12 11 16 16 N 1.34770 * 120.00520 * 72.89215 * 14 12 11 17 17 C 1.37103 * 119.99453 * 356.23490 * 16 14 12 18 18 H 1.08002 * 119.99969 * 240.84998 * 17 16 14 19 19 C 1.38945 * 120.00118 * 60.85800 * 17 16 14 20 20 N 1.31417 * 120.00109 * 15.01423 * 19 17 16 21 21 Si 1.86802 * 120.00062 * 195.01572 * 19 17 16 22 22 H 1.48497 * 109.47206 * 90.00063 * 21 19 17 23 23 H 1.48508 * 109.47125 * 210.00080 * 21 19 17 24 24 H 1.48497 * 109.47220 * 329.99526 * 21 19 17 25 25 C 1.46495 * 120.00343 * 176.23547 * 16 14 12 26 26 C 1.53005 * 109.46824 * 93.27236 * 25 16 14 27 27 O 1.42895 * 109.47362 * 65.00178 * 26 25 16 28 28 C 1.42904 * 113.99981 * 179.97438 * 27 26 25 29 29 C 1.46922 * 120.63302 * 173.86915 * 8 6 3 30 30 H 1.08993 * 109.46949 * 59.99923 * 1 2 3 31 31 H 1.08998 * 109.47502 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46835 * 300.00112 * 1 2 3 33 33 H 1.09000 * 109.46835 * 239.99888 * 2 1 3 34 34 H 1.09005 * 109.46731 * 120.00309 * 2 1 3 35 35 H 1.09001 * 109.46821 * 185.52715 * 5 3 2 36 36 H 1.09001 * 109.47371 * 305.52689 * 5 3 2 37 37 H 1.09002 * 109.47251 * 65.52490 * 5 3 2 38 38 H 1.09001 * 109.58734 * 246.15497 * 9 8 6 39 39 H 1.08998 * 109.59058 * 6.57598 * 9 8 6 40 40 H 1.09008 * 109.49748 * 174.58682 * 10 9 8 41 41 H 1.08993 * 109.49933 * 294.64842 * 10 9 8 42 42 H 1.09001 * 109.46283 * 58.65681 * 11 10 9 43 43 H 1.09004 * 109.45528 * 178.61167 * 11 10 9 44 44 H 0.96999 * 119.99832 * 180.02562 * 20 19 17 45 45 H 1.09003 * 109.47137 * 213.26865 * 25 16 14 46 46 H 1.08997 * 109.47254 * 333.27266 * 25 16 14 47 47 H 1.09002 * 109.46502 * 185.00460 * 26 25 16 48 48 H 1.09005 * 109.47020 * 304.99590 * 26 25 16 49 49 H 1.09000 * 109.47078 * 179.97438 * 28 27 26 50 50 H 1.08993 * 109.47115 * 300.00208 * 28 27 26 51 51 H 1.09005 * 109.46675 * 59.99823 * 28 27 26 52 52 H 1.09001 * 109.59021 * 353.42015 * 29 8 6 53 53 H 1.08999 * 109.58992 * 113.84589 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5419 1.4442 0.1239 7 8 4.1696 0.4294 -0.0934 8 7 4.1882 2.5750 0.4705 9 6 3.4583 3.8428 0.6062 10 6 3.7494 4.4339 1.9891 11 6 5.2631 4.5567 2.1786 12 6 5.9027 3.1685 2.1022 13 1 5.4714 2.5265 2.8702 14 6 7.3889 3.2868 2.3220 15 8 8.1527 3.1458 1.3904 16 7 7.8694 3.5493 3.5535 17 6 7.0044 3.7851 4.5907 18 1 7.0264 4.7334 5.1073 19 6 6.0996 2.8042 4.9775 20 7 6.2573 1.5659 4.5666 21 14 4.6588 3.2454 6.0816 22 1 3.4961 3.6375 5.2452 23 1 4.2957 2.0709 6.9147 24 1 5.0393 4.3785 6.9628 25 6 9.3157 3.5827 3.7838 26 6 9.8224 5.0189 3.6371 27 8 9.2567 5.8313 4.6676 28 6 9.6684 7.1990 4.6215 29 6 5.6350 2.5620 0.7260 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.0811 3.1202 -1.3505 36 1 1.9868 1.5335 -2.1517 37 1 0.5496 2.2131 -1.3511 38 1 3.7879 4.5386 -0.1654 39 1 2.3884 3.6612 0.5043 40 1 3.2917 5.4202 2.0669 41 1 3.3379 3.7803 2.7581 42 1 5.6769 5.1909 1.3946 43 1 5.4723 5.0000 3.1522 44 1 5.6254 0.8812 4.8363 45 1 9.5319 3.2221 4.7895 46 1 9.8147 2.9451 3.0541 47 1 10.9092 5.0310 3.7203 48 1 9.5283 5.4103 2.6632 49 1 9.1956 7.7484 5.4355 50 1 10.7519 7.2559 4.7253 51 1 9.3713 7.6358 3.6680 52 1 6.0010 1.5355 0.7032 53 1 6.1459 3.1512 -0.0356 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457180921.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:04 Heat of formation + Delta-G solvation = -145.581198 kcal Electronic energy + Delta-G solvation = -32588.892689 eV Core-core repulsion = 28459.617556 eV Total energy + Delta-G solvation = -4129.275133 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.64232 -40.59142 -38.75664 -38.01211 -36.53378 -36.44509 -34.23357 -33.54352 -32.17713 -30.85157 -30.26289 -27.31077 -26.95131 -26.59696 -25.56115 -25.14856 -23.26803 -22.78623 -21.62720 -20.75193 -19.82725 -18.78283 -18.07915 -17.64845 -17.36744 -17.05492 -16.70476 -16.52401 -16.27322 -16.14698 -15.73424 -15.48085 -15.32662 -15.19784 -14.96069 -14.70729 -14.31928 -14.01460 -13.92036 -13.75673 -13.64075 -13.31922 -13.11150 -13.01805 -12.93680 -12.87682 -12.71295 -12.64683 -12.57190 -12.49239 -12.26290 -12.10771 -12.01823 -11.89584 -11.74840 -11.68092 -11.58679 -11.45562 -10.73713 -10.63244 -10.54797 -10.11842 -9.62098 -9.12216 -8.26725 -6.22678 1.43128 1.45967 1.56716 1.60038 1.96003 2.16045 2.34259 2.95637 3.02622 3.11879 3.47479 3.79643 3.90174 3.97941 4.05150 4.09420 4.17833 4.22739 4.27201 4.34746 4.42104 4.46994 4.51914 4.54584 4.58782 4.60076 4.61312 4.65151 4.72241 4.75504 4.81237 4.85148 4.86372 4.92004 4.95384 5.01869 5.03336 5.12891 5.14890 5.20292 5.25819 5.37107 5.46170 5.47394 5.52136 5.55029 5.60912 6.15691 6.37088 6.47134 6.72632 7.05441 7.17067 7.64641 8.09844 8.76672 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014284 B = 0.003763 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.811829 B = 7438.199041 C = 8074.247005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.107 4.107 3 C -0.102 4.102 4 H 0.115 0.885 5 C -0.140 4.140 6 C 0.504 3.496 7 O -0.597 6.597 8 N -0.607 5.607 9 C 0.100 3.900 10 C -0.130 4.130 11 C -0.100 4.100 12 C -0.105 4.105 13 H 0.103 0.897 14 C 0.508 3.492 15 O -0.643 6.643 16 N -0.451 5.451 17 C -0.328 4.328 18 H 0.087 0.913 19 C 0.017 3.983 20 N -0.897 5.897 21 Si 0.956 3.044 22 H -0.249 1.249 23 H -0.293 1.293 24 H -0.258 1.258 25 C 0.107 3.893 26 C 0.069 3.931 27 O -0.398 6.398 28 C 0.026 3.974 29 C 0.146 3.854 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.039 0.961 35 H 0.072 0.928 36 H 0.050 0.950 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.121 0.879 40 H 0.113 0.887 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.266 0.734 45 H 0.066 0.934 46 H 0.063 0.937 47 H 0.071 0.929 48 H 0.033 0.967 49 H 0.095 0.905 50 H 0.052 0.948 51 H 0.038 0.962 52 H 0.041 0.959 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.903 9.484 -5.010 16.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.145 4.145 3 C -0.123 4.123 4 H 0.133 0.867 5 C -0.198 4.198 6 C 0.294 3.706 7 O -0.478 6.478 8 N -0.339 5.339 9 C -0.021 4.021 10 C -0.167 4.167 11 C -0.138 4.138 12 C -0.127 4.127 13 H 0.121 0.879 14 C 0.299 3.701 15 O -0.532 6.532 16 N -0.170 5.170 17 C -0.456 4.456 18 H 0.105 0.895 19 C -0.185 4.185 20 N -0.534 5.534 21 Si 0.779 3.221 22 H -0.173 1.173 23 H -0.219 1.219 24 H -0.182 1.182 25 C -0.016 4.016 26 C -0.009 4.009 27 O -0.317 6.317 28 C -0.070 4.070 29 C 0.022 3.978 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.119 0.881 38 H 0.107 0.893 39 H 0.139 0.861 40 H 0.132 0.868 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.081 0.919 47 H 0.089 0.911 48 H 0.051 0.949 49 H 0.114 0.886 50 H 0.071 0.929 51 H 0.057 0.943 52 H 0.060 0.940 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.377 8.663 -5.378 15.277 hybrid contribution 0.677 -0.607 0.675 1.132 sum -10.700 8.056 -4.703 14.196 Atomic orbital electron populations 1.21780 0.92534 1.02560 1.03161 1.21352 0.97687 0.94009 1.01456 1.21435 0.88137 0.99899 1.02864 0.86692 1.21897 1.03961 1.00366 0.93536 1.21697 0.92007 0.81833 0.75044 1.90650 1.70352 1.34562 1.52217 1.48270 1.08028 1.10167 1.67415 1.22236 0.98256 0.83745 0.97861 1.21974 0.94982 1.02979 0.96812 1.21374 0.95871 0.93696 1.02818 1.21398 0.93005 1.00534 0.97719 0.87946 1.20822 0.90814 0.76393 0.82109 1.90455 1.61200 1.58068 1.43459 1.43311 1.04061 1.62688 1.06925 1.19391 1.13765 0.99863 1.12547 0.89504 1.26366 1.01365 0.93784 0.97017 1.70104 1.36339 1.01461 1.45504 0.85500 0.79644 0.78006 0.78939 1.17287 1.21931 1.18217 1.21515 0.84561 0.94955 1.00588 1.22745 0.96963 0.91188 0.89979 1.88016 1.71286 1.20837 1.51580 1.22884 0.99886 0.82172 1.02066 1.20894 0.80896 0.99886 0.96160 0.90542 0.92236 0.91714 0.92685 0.94210 0.90877 0.93124 0.88073 0.89279 0.86084 0.86839 0.92822 0.92409 0.90605 0.92444 0.91561 0.91876 0.91054 0.94896 0.88629 0.92946 0.94290 0.94037 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.67 71.98 0.70 -1.57 16 2 C -0.11 -2.60 4.74 30.60 0.15 -2.45 16 3 C -0.10 -2.40 1.86 -11.54 -0.02 -2.43 16 4 H 0.12 2.20 7.07 -2.39 -0.02 2.19 16 5 C -0.14 -2.32 8.41 71.98 0.61 -1.71 16 6 C 0.50 18.02 6.90 87.65 0.61 18.63 16 7 O -0.60 -27.65 15.54 -3.04 -0.05 -27.70 16 8 N -0.61 -21.11 2.98 -819.75 -2.44 -23.55 16 9 C 0.10 2.36 5.35 86.36 0.46 2.83 16 10 C -0.13 -3.46 6.08 30.67 0.19 -3.27 16 11 C -0.10 -3.62 5.03 30.62 0.15 -3.47 16 12 C -0.10 -4.80 1.81 -11.60 -0.02 -4.82 16 13 H 0.10 5.25 4.64 -2.39 -0.01 5.24 16 14 C 0.51 26.63 6.51 87.66 0.57 27.20 16 15 O -0.64 -36.40 15.44 -3.06 -0.05 -36.44 16 16 N -0.45 -22.98 2.33 -635.55 -1.48 -24.47 16 17 C -0.33 -16.41 6.51 84.04 0.55 -15.86 16 18 H 0.09 4.35 7.22 -2.91 -0.02 4.33 16 19 C 0.02 0.86 3.68 84.92 0.31 1.18 16 20 N -0.90 -49.40 11.73 21.66 0.25 -49.15 16 21 Si 0.96 38.61 29.58 68.60 2.03 40.64 16 22 H -0.25 -9.10 7.11 99.48 0.71 -8.40 16 23 H -0.29 -12.21 7.11 99.48 0.71 -11.51 16 24 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 25 C 0.11 4.93 5.84 86.38 0.50 5.44 16 26 C 0.07 2.61 6.28 71.98 0.45 3.07 16 27 O -0.40 -14.98 9.54 -148.98 -1.42 -16.40 16 28 C 0.03 0.69 11.01 113.37 1.25 1.94 16 29 C 0.15 6.48 5.17 86.22 0.45 6.92 16 30 H 0.08 0.92 6.69 -2.39 -0.02 0.90 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.05 1.48 8.08 -2.39 -0.02 1.46 16 34 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.07 1.07 6.33 -2.39 -0.02 1.06 16 36 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.10 1.04 6.84 -2.39 -0.02 1.03 16 38 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.12 1.96 4.81 -2.39 -0.01 1.95 16 40 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 41 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.06 1.99 8.14 -2.39 -0.02 1.98 16 43 H 0.08 2.97 6.43 -2.38 -0.02 2.95 16 44 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 45 H 0.07 3.06 8.07 -2.39 -0.02 3.04 16 46 H 0.06 3.00 7.38 -2.39 -0.02 2.98 16 47 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 48 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 49 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 50 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.04 0.98 8.14 -2.38 -0.02 0.97 16 52 H 0.04 2.20 7.05 -2.39 -0.02 2.18 16 53 H 0.06 2.71 7.77 -2.39 -0.02 2.69 16 Total: -1.00 -74.72 405.85 4.62 -70.10 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: 0.88 Total: 35.35 kcal Atomic # 6 Polarization: 24.73 SS G_CDS: 6.89 Total: 31.62 kcal Atomic # 7 Polarization: -93.49 SS G_CDS: -3.67 Total: -97.16 kcal Atomic # 8 Polarization: -79.03 SS G_CDS: -1.52 Total: -80.55 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Total: -74.72 4.62 -70.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457180921.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.479 kcal (2) G-P(sol) polarization free energy of solvation -74.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds