Wall clock time and date at job start Sat Apr 11 2020 06:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47216 * 2 1 4 4 N 1.46500 * 109.47204 * 175.24937 * 3 2 1 5 5 C 1.37095 * 120.00240 * 86.28138 * 4 3 2 6 6 H 1.08001 * 120.00240 * 312.53296 * 5 4 3 7 7 C 1.38954 * 120.00197 * 132.52350 * 5 4 3 8 8 N 1.31405 * 119.99847 * 160.08361 * 7 5 4 9 9 Si 1.86796 * 120.00053 * 340.09071 * 7 5 4 10 10 H 1.48498 * 109.47507 * 95.97623 * 9 7 5 11 11 H 1.48502 * 109.47379 * 215.98292 * 9 7 5 12 12 H 1.48507 * 109.47261 * 335.97909 * 9 7 5 13 13 C 1.34772 * 120.00205 * 266.28346 * 4 3 2 14 14 O 1.21301 * 120.00536 * 184.53067 * 13 4 3 15 15 C 1.50708 * 120.00027 * 4.52943 * 13 4 3 16 16 H 1.08995 * 110.63943 * 34.64986 * 15 13 4 17 17 C 1.55156 * 110.71842 * 271.32057 * 15 13 4 18 18 C 1.54909 * 101.58276 * 206.13437 * 17 15 13 19 19 N 1.47431 * 104.83125 * 37.00710 * 18 17 15 20 20 C 1.34774 * 125.65150 * 155.91589 * 19 18 17 21 21 O 1.21501 * 120.00390 * 179.97438 * 20 19 18 22 22 O 1.34636 * 119.99703 * 359.94929 * 20 19 18 23 23 C 1.45199 * 117.00265 * 180.02562 * 22 20 19 24 24 C 1.52998 * 109.46769 * 60.00308 * 23 22 20 25 25 C 1.52997 * 109.47397 * 180.02562 * 23 22 20 26 26 C 1.53001 * 109.46979 * 300.00680 * 23 22 20 27 27 C 1.47027 * 108.70323 * 335.87065 * 19 18 17 28 28 H 1.09001 * 109.87863 * 120.47340 * 27 19 18 29 29 C 1.52992 * 109.88642 * 241.64442 * 27 19 18 30 30 H 1.08996 * 109.47490 * 59.99563 * 1 2 3 31 31 H 1.09004 * 109.47105 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47242 * 299.99613 * 1 2 3 33 33 H 1.09004 * 109.47793 * 120.00557 * 2 1 3 34 34 H 1.09008 * 109.47031 * 240.00237 * 2 1 3 35 35 H 1.08998 * 109.47379 * 295.25289 * 3 2 1 36 36 H 1.08997 * 109.46961 * 55.25113 * 3 2 1 37 37 H 0.97003 * 120.00027 * 180.02562 * 8 7 5 38 38 H 1.09001 * 111.00539 * 324.20286 * 17 15 13 39 39 H 1.08994 * 111.00963 * 88.05919 * 17 15 13 40 40 H 1.09000 * 110.36475 * 278.17252 * 18 17 15 41 41 H 1.08997 * 110.37354 * 155.84360 * 18 17 15 42 42 H 1.08998 * 109.47391 * 60.00377 * 24 23 22 43 43 H 1.09003 * 109.47313 * 180.02562 * 24 23 22 44 44 H 1.08996 * 109.47434 * 300.00044 * 24 23 22 45 45 H 1.08997 * 109.47372 * 59.99665 * 25 23 22 46 46 H 1.09003 * 109.46881 * 180.02562 * 25 23 22 47 47 H 1.08998 * 109.47016 * 299.99778 * 25 23 22 48 48 H 1.08996 * 109.47305 * 59.99907 * 26 23 22 49 49 H 1.09000 * 109.47215 * 180.02562 * 26 23 22 50 50 H 1.09004 * 109.46948 * 299.99413 * 26 23 22 51 51 H 1.08999 * 109.47023 * 177.81235 * 29 27 19 52 52 H 1.09003 * 109.47053 * 297.80627 * 29 27 19 53 53 H 1.08998 * 109.46983 * 57.80793 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5005 1.4441 0.1144 5 6 4.2763 1.3351 -1.0106 6 1 4.0565 0.5762 -1.7469 7 6 5.3455 2.2013 -1.2038 8 7 6.3088 1.8802 -2.0379 9 14 5.4136 3.8222 -0.2778 10 1 6.2489 3.6622 0.9395 11 1 6.0063 4.8668 -1.1512 12 1 4.0395 4.2263 0.1145 13 6 4.0815 1.5526 1.3256 14 8 5.2883 1.6367 1.4142 15 6 3.2317 1.5695 2.5702 16 1 2.3620 0.9235 2.4504 17 6 2.8002 3.0181 2.9205 18 6 2.5849 2.9168 4.4513 19 7 3.6439 2.0054 4.9218 20 6 4.1470 1.9646 6.1715 21 8 5.0219 1.1683 6.4485 22 8 3.6805 2.8065 7.1128 23 6 4.2689 2.7068 8.4365 24 6 5.7716 2.9806 8.3485 25 6 3.6163 3.7343 9.3635 26 6 4.0385 1.3001 8.9924 27 6 4.0596 1.1477 3.8024 28 1 5.1216 1.2892 3.6015 29 6 3.7815 -0.3185 4.1390 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 1.7477 1.9312 -0.9294 36 1 1.6088 1.9803 0.8444 37 1 7.0554 2.4847 -2.1725 38 1 3.5912 3.7295 2.6836 39 1 1.8732 3.2834 2.4124 40 1 1.6015 2.5003 4.6693 41 1 2.6941 3.8969 4.9155 42 1 5.9358 3.9828 7.9525 43 1 6.2135 2.9054 9.3421 44 1 6.2363 2.2484 7.6882 45 1 2.5458 3.5389 9.4261 46 1 4.0583 3.6597 10.3570 47 1 3.7801 4.7365 8.9676 48 1 4.5032 0.5679 8.3321 49 1 4.4798 1.2254 9.9862 50 1 2.9679 1.1051 9.0551 51 1 4.0559 -0.9446 3.2900 52 1 4.3693 -0.6092 5.0097 53 1 2.7212 -0.4464 4.3572 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492666496.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:51 Heat of formation + Delta-G solvation = -108.523380 kcal Electronic energy + Delta-G solvation = -32495.594564 eV Core-core repulsion = 28367.926378 eV Total energy + Delta-G solvation = -4127.668186 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.89140 -39.73057 -37.97895 -36.32135 -35.37036 -34.17067 -32.88519 -31.75437 -31.29178 -31.14049 -27.57815 -27.49853 -26.70695 -25.93125 -24.31550 -23.54486 -22.03033 -21.22603 -20.68110 -19.33262 -18.87910 -17.93976 -17.25494 -16.62193 -16.31747 -15.91135 -15.43163 -15.02997 -14.77880 -14.41595 -14.31817 -14.03039 -13.84128 -13.61856 -13.52478 -13.21806 -13.10453 -12.77008 -12.64644 -12.44323 -12.34000 -12.23975 -12.12005 -12.03086 -11.99722 -11.85813 -11.73933 -11.53794 -11.38783 -11.33399 -11.31284 -11.07055 -10.84611 -10.69616 -10.58081 -10.39321 -10.25957 -10.15680 -9.94975 -9.91088 -8.68456 -8.59002 -8.46176 -7.57043 -6.21472 -4.01289 2.10574 2.93734 3.25124 3.39987 3.59631 3.71114 3.86902 4.31773 4.50480 4.56739 4.59342 4.61124 4.75556 4.81431 5.05717 5.17359 5.24414 5.28161 5.30243 5.35174 5.37099 5.37755 5.42554 5.51404 5.55855 5.60030 5.60840 5.63541 5.70115 5.72199 5.76095 5.81202 5.84807 5.89563 5.98530 6.10530 6.15969 6.16867 6.18401 6.22433 6.25600 6.33552 6.39416 6.47219 6.53992 6.57184 6.72663 7.59416 7.84574 8.02391 8.42851 8.76718 8.90189 9.41455 9.79908 10.85090 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014155 B = 0.003589 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.619069 B = 7800.149827 C = 8737.876051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.102 3.898 4 N -0.461 5.461 5 C -0.352 4.352 6 H 0.093 0.907 7 C 0.097 3.903 8 N -0.864 5.864 9 Si 0.900 3.100 10 H -0.259 1.259 11 H -0.304 1.304 12 H -0.277 1.277 13 C 0.467 3.533 14 O -0.539 6.539 15 C -0.117 4.117 16 H 0.102 0.898 17 C -0.125 4.125 18 C 0.107 3.893 19 N -0.598 5.598 20 C 0.668 3.332 21 O -0.565 6.565 22 O -0.364 6.364 23 C 0.136 3.864 24 C -0.184 4.184 25 C -0.139 4.139 26 C -0.183 4.183 27 C 0.164 3.836 28 H 0.103 0.897 29 C -0.159 4.159 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.272 0.728 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.059 0.941 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.066 0.934 48 H 0.089 0.911 49 H 0.068 0.932 50 H 0.058 0.942 51 H 0.071 0.929 52 H 0.070 0.930 53 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.220 2.234 18.033 21.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.178 4.178 3 C -0.022 4.022 4 N -0.183 5.183 5 C -0.477 4.477 6 H 0.110 0.890 7 C -0.113 4.113 8 N -0.498 5.498 9 Si 0.729 3.271 10 H -0.185 1.185 11 H -0.232 1.232 12 H -0.202 1.202 13 C 0.255 3.745 14 O -0.420 6.420 15 C -0.139 4.139 16 H 0.120 0.880 17 C -0.164 4.164 18 C -0.015 4.015 19 N -0.339 5.339 20 C 0.423 3.577 21 O -0.454 6.454 22 O -0.279 6.279 23 C 0.099 3.901 24 C -0.242 4.242 25 C -0.196 4.196 26 C -0.240 4.240 27 C 0.062 3.938 28 H 0.121 0.879 29 C -0.217 4.217 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.108 0.892 45 H 0.084 0.916 46 H 0.097 0.903 47 H 0.085 0.915 48 H 0.108 0.892 49 H 0.087 0.913 50 H 0.077 0.923 51 H 0.090 0.910 52 H 0.089 0.911 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.108 2.076 18.201 21.423 hybrid contribution -0.013 0.829 0.332 0.893 sum -11.122 2.904 18.533 21.808 Atomic orbital electron populations 1.21721 0.96181 1.01210 1.01459 1.21926 0.94797 0.98369 1.02710 1.21705 0.83192 0.95715 1.01587 1.43563 1.04071 1.65555 1.05089 1.18726 1.11294 1.18078 0.99631 0.88954 1.25312 0.94036 0.98022 0.93911 1.69759 1.07967 1.36138 1.35975 0.86517 0.78625 0.81488 0.80487 1.18470 1.23233 1.20218 1.19971 0.88410 0.81962 0.84177 1.90567 1.14403 1.51611 1.85413 1.22449 0.99400 0.97901 0.94149 0.88003 1.22822 1.02915 0.96278 0.94336 1.22319 0.90739 0.94099 0.94382 1.47302 1.40276 1.39249 1.07054 1.17416 0.80092 0.79753 0.80404 1.90879 1.33056 1.41390 1.80097 1.86290 1.63125 1.57783 1.20735 1.22024 0.93386 0.96608 0.78093 1.22523 0.94624 1.03400 1.03612 1.21843 1.01386 0.98422 0.97985 1.22511 1.02398 0.96828 1.02234 1.21476 1.01047 0.89339 0.81894 0.87898 1.22135 1.01436 0.95125 1.03033 0.92742 0.93080 0.93103 0.92311 0.91258 0.90732 0.92448 0.91847 0.90084 0.89051 0.91030 0.90166 0.92214 0.91310 0.89192 0.91573 0.90276 0.91540 0.89248 0.91327 0.92319 0.91012 0.91121 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 37.15 0.37 -1.28 16 2 C -0.14 -2.06 6.07 -26.73 -0.16 -2.22 16 3 C 0.10 1.74 4.98 -4.04 -0.02 1.72 16 4 N -0.46 -10.47 2.06 -114.81 -0.24 -10.71 16 5 C -0.35 -9.63 9.62 -14.93 -0.14 -9.78 16 6 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 7 C 0.10 2.81 4.82 -17.47 -0.08 2.72 16 8 N -0.86 -26.29 13.96 55.50 0.77 -25.51 16 9 Si 0.90 23.59 25.11 -169.99 -4.27 19.33 16 10 H -0.26 -7.23 6.53 56.52 0.37 -6.86 16 11 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 13 C 0.47 10.54 5.29 -10.98 -0.06 10.48 16 14 O -0.54 -14.65 11.57 5.54 0.06 -14.59 16 15 C -0.12 -1.96 1.84 -89.93 -0.17 -2.13 16 16 H 0.10 1.47 5.97 -51.93 -0.31 1.16 16 17 C -0.13 -1.81 6.23 -24.58 -0.15 -1.96 16 18 C 0.11 1.35 6.92 -2.53 -0.02 1.34 16 19 N -0.60 -9.35 3.07 -168.75 -0.52 -9.87 16 20 C 0.67 10.77 7.72 54.05 0.42 11.19 16 21 O -0.56 -10.13 10.93 -19.27 -0.21 -10.34 16 22 O -0.36 -5.04 9.42 -40.31 -0.38 -5.42 16 23 C 0.14 1.53 1.13 -90.62 -0.10 1.42 16 24 C -0.18 -2.13 8.37 37.16 0.31 -1.82 16 25 C -0.14 -1.13 8.85 37.16 0.33 -0.80 16 26 C -0.18 -1.95 8.37 37.16 0.31 -1.64 16 27 C 0.16 2.85 3.00 -66.95 -0.20 2.65 16 28 H 0.10 2.19 6.75 -51.93 -0.35 1.84 16 29 C -0.16 -2.46 9.09 37.15 0.34 -2.13 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.87 7.42 -51.93 -0.39 0.48 16 34 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 35 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 36 H 0.06 0.82 5.43 -51.93 -0.28 0.54 16 37 H 0.27 7.81 8.31 -40.82 -0.34 7.47 16 38 H 0.08 1.37 8.04 -51.93 -0.42 0.96 16 39 H 0.09 1.08 7.19 -51.93 -0.37 0.70 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.93 8.04 -51.93 -0.42 0.51 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.09 1.30 5.88 -51.93 -0.31 0.99 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.09 1.19 5.88 -51.93 -0.31 0.89 16 49 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 51 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 52 H 0.07 1.15 6.90 -51.93 -0.36 0.79 16 53 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 405.01 15.07 6.10 6.10 Total: -1.00 -33.92 405.01 -7.14 -41.06 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -9.43 Total: 2.20 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 0.97 Total: 7.76 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.02 Total: -46.09 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -0.53 Total: -30.35 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -4.27 Total: 19.33 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.92 -7.14 -41.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492666496.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.467 kcal (2) G-P(sol) polarization free energy of solvation -33.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds