Wall clock time and date at job start Sat Apr 11 2020 06:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47216 * 2 1 4 4 N 1.46500 * 109.47204 * 175.24937 * 3 2 1 5 5 C 1.37095 * 120.00240 * 86.28138 * 4 3 2 6 6 H 1.08001 * 120.00240 * 312.53296 * 5 4 3 7 7 C 1.38954 * 120.00197 * 132.52350 * 5 4 3 8 8 N 1.31405 * 119.99847 * 160.08361 * 7 5 4 9 9 Si 1.86796 * 120.00053 * 340.09071 * 7 5 4 10 10 H 1.48498 * 109.47507 * 95.97623 * 9 7 5 11 11 H 1.48502 * 109.47379 * 215.98292 * 9 7 5 12 12 H 1.48507 * 109.47261 * 335.97909 * 9 7 5 13 13 C 1.34772 * 120.00205 * 266.28346 * 4 3 2 14 14 O 1.21301 * 120.00536 * 184.53067 * 13 4 3 15 15 C 1.50708 * 120.00027 * 4.52943 * 13 4 3 16 16 H 1.08995 * 110.63943 * 34.64986 * 15 13 4 17 17 C 1.55156 * 110.71842 * 271.32057 * 15 13 4 18 18 C 1.54909 * 101.58276 * 206.13437 * 17 15 13 19 19 N 1.47431 * 104.83125 * 37.00710 * 18 17 15 20 20 C 1.34774 * 125.65150 * 155.91589 * 19 18 17 21 21 O 1.21501 * 120.00390 * 179.97438 * 20 19 18 22 22 O 1.34636 * 119.99703 * 359.94929 * 20 19 18 23 23 C 1.45199 * 117.00265 * 180.02562 * 22 20 19 24 24 C 1.52998 * 109.46769 * 60.00308 * 23 22 20 25 25 C 1.52997 * 109.47397 * 180.02562 * 23 22 20 26 26 C 1.53001 * 109.46979 * 300.00680 * 23 22 20 27 27 C 1.47027 * 108.70323 * 335.87065 * 19 18 17 28 28 H 1.09001 * 109.87863 * 120.47340 * 27 19 18 29 29 C 1.52992 * 109.88642 * 241.64442 * 27 19 18 30 30 H 1.08996 * 109.47490 * 59.99563 * 1 2 3 31 31 H 1.09004 * 109.47105 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47242 * 299.99613 * 1 2 3 33 33 H 1.09004 * 109.47793 * 120.00557 * 2 1 3 34 34 H 1.09008 * 109.47031 * 240.00237 * 2 1 3 35 35 H 1.08998 * 109.47379 * 295.25289 * 3 2 1 36 36 H 1.08997 * 109.46961 * 55.25113 * 3 2 1 37 37 H 0.97003 * 120.00027 * 180.02562 * 8 7 5 38 38 H 1.09001 * 111.00539 * 324.20286 * 17 15 13 39 39 H 1.08994 * 111.00963 * 88.05919 * 17 15 13 40 40 H 1.09000 * 110.36475 * 278.17252 * 18 17 15 41 41 H 1.08997 * 110.37354 * 155.84360 * 18 17 15 42 42 H 1.08998 * 109.47391 * 60.00377 * 24 23 22 43 43 H 1.09003 * 109.47313 * 180.02562 * 24 23 22 44 44 H 1.08996 * 109.47434 * 300.00044 * 24 23 22 45 45 H 1.08997 * 109.47372 * 59.99665 * 25 23 22 46 46 H 1.09003 * 109.46881 * 180.02562 * 25 23 22 47 47 H 1.08998 * 109.47016 * 299.99778 * 25 23 22 48 48 H 1.08996 * 109.47305 * 59.99907 * 26 23 22 49 49 H 1.09000 * 109.47215 * 180.02562 * 26 23 22 50 50 H 1.09004 * 109.46948 * 299.99413 * 26 23 22 51 51 H 1.08999 * 109.47023 * 177.81235 * 29 27 19 52 52 H 1.09003 * 109.47053 * 297.80627 * 29 27 19 53 53 H 1.08998 * 109.46983 * 57.80793 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5005 1.4441 0.1144 5 6 4.2763 1.3351 -1.0106 6 1 4.0565 0.5762 -1.7469 7 6 5.3455 2.2013 -1.2038 8 7 6.3088 1.8802 -2.0379 9 14 5.4136 3.8222 -0.2778 10 1 6.2489 3.6622 0.9395 11 1 6.0063 4.8668 -1.1512 12 1 4.0395 4.2263 0.1145 13 6 4.0815 1.5526 1.3256 14 8 5.2883 1.6367 1.4142 15 6 3.2317 1.5695 2.5702 16 1 2.3620 0.9235 2.4504 17 6 2.8002 3.0181 2.9205 18 6 2.5849 2.9168 4.4513 19 7 3.6439 2.0054 4.9218 20 6 4.1470 1.9646 6.1715 21 8 5.0219 1.1683 6.4485 22 8 3.6805 2.8065 7.1128 23 6 4.2689 2.7068 8.4365 24 6 5.7716 2.9806 8.3485 25 6 3.6163 3.7343 9.3635 26 6 4.0385 1.3001 8.9924 27 6 4.0596 1.1477 3.8024 28 1 5.1216 1.2892 3.6015 29 6 3.7815 -0.3185 4.1390 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 1.7477 1.9312 -0.9294 36 1 1.6088 1.9803 0.8444 37 1 7.0554 2.4847 -2.1725 38 1 3.5912 3.7295 2.6836 39 1 1.8732 3.2834 2.4124 40 1 1.6015 2.5003 4.6693 41 1 2.6941 3.8969 4.9155 42 1 5.9358 3.9828 7.9525 43 1 6.2135 2.9054 9.3421 44 1 6.2363 2.2484 7.6882 45 1 2.5458 3.5389 9.4261 46 1 4.0583 3.6597 10.3570 47 1 3.7801 4.7365 8.9676 48 1 4.5032 0.5679 8.3321 49 1 4.4798 1.2254 9.9862 50 1 2.9679 1.1051 9.0551 51 1 4.0559 -0.9446 3.2900 52 1 4.3693 -0.6092 5.0097 53 1 2.7212 -0.4464 4.3572 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492666496.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:50 Heat of formation + Delta-G solvation = -130.319475 kcal Electronic energy + Delta-G solvation = -32496.539713 eV Core-core repulsion = 28367.926378 eV Total energy + Delta-G solvation = -4128.613335 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.09676 -41.19788 -39.35067 -37.52602 -37.03123 -35.16934 -34.70433 -33.24834 -32.71305 -32.40837 -28.37404 -28.28643 -28.24922 -27.27161 -25.87599 -24.83069 -23.26273 -22.39598 -22.02832 -20.76371 -20.23910 -19.41397 -18.61023 -18.02763 -17.45634 -17.31553 -17.22259 -16.22554 -16.00832 -15.85902 -15.65427 -15.32886 -15.29363 -14.91472 -14.73216 -14.62009 -14.34497 -14.23883 -13.96643 -13.66806 -13.53736 -13.32860 -13.26525 -13.08100 -12.94478 -12.89302 -12.85235 -12.84722 -12.71719 -12.60854 -12.42899 -12.30085 -12.26169 -12.10150 -12.04382 -11.82002 -11.76099 -11.44496 -11.38426 -11.06586 -10.80209 -10.39264 -9.81696 -9.49241 -8.43797 -6.21643 0.98156 1.18023 1.29596 1.44418 1.73416 1.89726 2.39675 2.61464 2.85990 3.09027 3.37539 3.50198 3.74833 3.76325 3.80458 3.95166 4.07338 4.12330 4.14447 4.22763 4.32780 4.37968 4.45051 4.51040 4.58575 4.60979 4.64301 4.66824 4.73855 4.76049 4.76576 4.84026 4.86673 4.88697 4.93528 4.99871 5.08003 5.10158 5.13615 5.18019 5.23743 5.28191 5.32538 5.36149 5.38686 5.45664 5.59494 5.72619 5.92562 6.41979 6.78787 6.92689 7.24859 7.34254 7.89357 8.66227 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014155 B = 0.003589 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1977.619069 B = 7800.149827 C = 8737.876051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.135 4.135 3 C 0.096 3.904 4 N -0.473 5.473 5 C -0.342 4.342 6 H 0.066 0.934 7 C 0.046 3.954 8 N -0.912 5.912 9 Si 0.948 3.052 10 H -0.293 1.293 11 H -0.301 1.301 12 H -0.242 1.242 13 C 0.463 3.537 14 O -0.594 6.594 15 C -0.104 4.104 16 H 0.140 0.860 17 C -0.124 4.124 18 C 0.111 3.889 19 N -0.602 5.602 20 C 0.663 3.337 21 O -0.592 6.592 22 O -0.361 6.361 23 C 0.123 3.877 24 C -0.183 4.183 25 C -0.132 4.132 26 C -0.178 4.178 27 C 0.166 3.834 28 H 0.050 0.950 29 C -0.149 4.149 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.040 0.960 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.270 0.730 38 H 0.050 0.950 39 H 0.133 0.867 40 H 0.111 0.889 41 H 0.093 0.907 42 H 0.057 0.943 43 H 0.093 0.907 44 H 0.054 0.946 45 H 0.075 0.925 46 H 0.103 0.897 47 H 0.067 0.933 48 H 0.057 0.943 49 H 0.091 0.909 50 H 0.067 0.933 51 H 0.062 0.938 52 H 0.055 0.945 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.808 3.515 20.996 27.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.173 4.173 3 C -0.026 4.026 4 N -0.195 5.195 5 C -0.469 4.469 6 H 0.083 0.917 7 C -0.158 4.158 8 N -0.550 5.550 9 Si 0.777 3.223 10 H -0.221 1.221 11 H -0.229 1.229 12 H -0.165 1.165 13 C 0.253 3.747 14 O -0.478 6.478 15 C -0.126 4.126 16 H 0.157 0.843 17 C -0.162 4.162 18 C -0.010 4.010 19 N -0.343 5.343 20 C 0.419 3.581 21 O -0.483 6.483 22 O -0.275 6.275 23 C 0.087 3.913 24 C -0.240 4.240 25 C -0.189 4.189 26 C -0.235 4.235 27 C 0.063 3.937 28 H 0.068 0.932 29 C -0.207 4.207 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.117 0.883 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.151 0.849 40 H 0.129 0.871 41 H 0.111 0.889 42 H 0.076 0.924 43 H 0.112 0.888 44 H 0.073 0.927 45 H 0.094 0.906 46 H 0.121 0.879 47 H 0.086 0.914 48 H 0.076 0.924 49 H 0.110 0.890 50 H 0.086 0.914 51 H 0.080 0.920 52 H 0.074 0.926 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.783 3.380 21.165 26.617 hybrid contribution 1.458 0.325 -0.513 1.579 sum -14.325 3.705 20.652 25.405 Atomic orbital electron populations 1.21669 0.92656 1.02459 1.02953 1.21860 0.97707 0.96324 1.01434 1.22022 0.79319 0.97873 1.03406 1.43786 1.06346 1.65505 1.03836 1.18642 1.11539 1.16550 1.00195 0.91668 1.25979 0.94187 1.00819 0.94810 1.69857 1.09103 1.37394 1.38614 0.85722 0.79732 0.78947 0.77944 1.22062 1.22916 1.16540 1.20940 0.88359 0.79695 0.85744 1.90552 1.17361 1.53494 1.86431 1.22379 0.99008 1.00859 0.90379 0.84258 1.22932 1.03656 0.93288 0.96318 1.22563 0.91335 0.94539 0.92581 1.47317 1.40977 1.39531 1.06492 1.17592 0.79799 0.79800 0.80915 1.90880 1.34168 1.42564 1.80727 1.86302 1.63017 1.56838 1.21366 1.22452 0.93271 0.98115 0.77436 1.22496 0.95269 1.02007 1.04221 1.21863 1.01825 0.97151 0.98053 1.22456 1.02820 0.95589 1.02630 1.21215 0.98384 0.90931 0.83203 0.93216 1.22032 1.03118 0.93614 1.01921 0.92337 0.92057 0.90515 0.92204 0.94149 0.90819 0.88324 0.92027 0.93106 0.84936 0.87064 0.88862 0.92430 0.88780 0.92744 0.90633 0.87889 0.91414 0.92416 0.89028 0.91412 0.91950 0.92635 0.89645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.91 71.98 0.71 -1.78 16 2 C -0.13 -3.62 6.07 30.59 0.19 -3.43 16 3 C 0.10 2.99 4.98 86.38 0.43 3.42 16 4 N -0.47 -21.22 2.06 -635.53 -1.31 -22.53 16 5 C -0.34 -19.29 9.62 84.04 0.81 -18.48 16 6 H 0.07 3.95 8.06 -2.91 -0.02 3.93 16 7 C 0.05 2.78 4.82 84.93 0.41 3.19 16 8 N -0.91 -58.31 13.96 21.66 0.30 -58.01 16 9 Si 0.95 50.07 25.11 68.60 1.72 51.79 16 10 H -0.29 -17.03 6.53 99.48 0.65 -16.38 16 11 H -0.30 -15.46 7.11 99.48 0.71 -14.75 16 12 H -0.24 -11.17 7.11 99.48 0.71 -10.46 16 13 C 0.46 20.79 5.29 87.66 0.46 21.25 16 14 O -0.59 -33.65 11.57 -3.10 -0.04 -33.69 16 15 C -0.10 -3.26 1.84 -10.35 -0.02 -3.28 16 16 H 0.14 3.32 5.97 -2.39 -0.01 3.31 16 17 C -0.12 -3.09 6.23 31.99 0.20 -2.89 16 18 C 0.11 2.31 6.92 86.85 0.60 2.91 16 19 N -0.60 -17.81 3.07 -918.23 -2.81 -20.62 16 20 C 0.66 20.90 7.72 129.79 1.00 21.91 16 21 O -0.59 -21.86 10.93 19.84 0.22 -21.65 16 22 O -0.36 -9.27 9.42 -55.45 -0.52 -9.79 16 23 C 0.12 2.53 1.13 -10.79 -0.01 2.52 16 24 C -0.18 -4.08 8.37 71.98 0.60 -3.48 16 25 C -0.13 -1.66 8.85 71.98 0.64 -1.03 16 26 C -0.18 -3.48 8.37 71.98 0.60 -2.88 16 27 C 0.17 5.68 3.00 45.34 0.14 5.81 16 28 H 0.05 2.25 6.75 -2.39 -0.02 2.23 16 29 C -0.15 -4.48 9.09 71.98 0.65 -3.83 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 1.59 7.42 -2.38 -0.02 1.57 16 34 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 36 H 0.10 2.27 5.43 -2.39 -0.01 2.25 16 37 H 0.27 16.42 8.31 -92.71 -0.77 15.65 16 38 H 0.05 1.61 8.04 -2.39 -0.02 1.59 16 39 H 0.13 2.23 7.19 -2.39 -0.02 2.21 16 40 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.09 1.75 8.04 -2.39 -0.02 1.74 16 42 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.05 1.63 5.88 -2.39 -0.01 1.61 16 45 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.06 1.53 5.88 -2.39 -0.01 1.52 16 49 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 51 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 52 H 0.05 1.83 6.90 -2.39 -0.02 1.82 16 53 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -82.77 405.01 5.80 -76.98 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.82 Total: 17.58 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: 7.42 Total: 19.94 kcal Atomic # 7 Polarization: -97.34 SS G_CDS: -3.82 Total: -101.16 kcal Atomic # 8 Polarization: -64.79 SS G_CDS: -0.34 Total: -65.13 kcal Atomic # 14 Polarization: 50.07 SS G_CDS: 1.72 Total: 51.79 kcal Total: -82.77 5.80 -76.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492666496.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.341 kcal (2) G-P(sol) polarization free energy of solvation -82.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds