Wall clock time and date at job start Sat Apr 11 2020 06:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46762 * 2 1 4 4 N 1.46496 * 109.46936 * 175.41260 * 3 2 1 5 5 C 1.37097 * 120.00519 * 83.95707 * 4 3 2 6 6 H 1.08003 * 120.00218 * 170.76364 * 5 4 3 7 7 C 1.38948 * 119.99810 * 350.75906 * 5 4 3 8 8 N 1.31414 * 120.00260 * 2.45480 * 7 5 4 9 9 Si 1.86807 * 120.00132 * 182.44804 * 7 5 4 10 10 H 1.48497 * 109.46993 * 90.00286 * 9 7 5 11 11 H 1.48502 * 109.47100 * 210.00465 * 9 7 5 12 12 H 1.48500 * 109.46687 * 330.00340 * 9 7 5 13 13 C 1.34779 * 119.99770 * 263.95519 * 4 3 2 14 14 O 1.21299 * 120.00067 * 174.84051 * 13 4 3 15 15 C 1.50703 * 119.99992 * 354.84643 * 13 4 3 16 16 H 1.09000 * 110.63769 * 38.12893 * 15 13 4 17 17 C 1.55155 * 110.71777 * 161.27084 * 15 13 4 18 18 C 1.55125 * 101.48070 * 153.73457 * 17 15 13 19 19 N 1.47426 * 104.94474 * 323.22272 * 18 17 15 20 20 C 1.34776 * 125.65052 * 204.04392 * 19 18 17 21 21 O 1.21507 * 120.00199 * 179.97438 * 20 19 18 22 22 O 1.34640 * 119.99648 * 359.95238 * 20 19 18 23 23 C 1.45205 * 116.99578 * 180.02562 * 22 20 19 24 24 C 1.52997 * 109.47367 * 60.00267 * 23 22 20 25 25 C 1.53002 * 109.47007 * 179.97438 * 23 22 20 26 26 C 1.52996 * 109.47131 * 299.99778 * 23 22 20 27 27 C 1.47021 * 108.70020 * 24.00362 * 19 18 17 28 28 H 1.09000 * 110.00844 * 118.43358 * 27 19 18 29 29 C 1.53002 * 109.88093 * 239.52261 * 27 19 18 30 30 H 1.08994 * 109.47606 * 300.00401 * 1 2 3 31 31 H 1.09001 * 109.46922 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47230 * 60.00572 * 1 2 3 33 33 H 1.09005 * 109.46745 * 119.99230 * 2 1 3 34 34 H 1.09000 * 109.47187 * 239.99749 * 2 1 3 35 35 H 1.08999 * 109.46731 * 295.40635 * 3 2 1 36 36 H 1.08992 * 109.47504 * 55.40561 * 3 2 1 37 37 H 0.96999 * 120.00106 * 179.97438 * 8 7 5 38 38 H 1.08999 * 111.00987 * 271.93839 * 17 15 13 39 39 H 1.09000 * 111.00639 * 35.79236 * 17 15 13 40 40 H 1.09001 * 110.42060 * 204.29296 * 18 17 15 41 41 H 1.09000 * 110.21161 * 82.04672 * 18 17 15 42 42 H 1.09003 * 109.47164 * 59.99615 * 24 23 22 43 43 H 1.08993 * 109.47633 * 179.97438 * 24 23 22 44 44 H 1.08999 * 109.46854 * 300.00151 * 24 23 22 45 45 H 1.09011 * 109.46999 * 60.00120 * 25 23 22 46 46 H 1.08992 * 109.47491 * 179.97438 * 25 23 22 47 47 H 1.09001 * 109.47607 * 300.00237 * 25 23 22 48 48 H 1.09000 * 109.47060 * 60.00493 * 26 23 22 49 49 H 1.08998 * 109.47283 * 179.97438 * 26 23 22 50 50 H 1.08998 * 109.47163 * 300.00333 * 26 23 22 51 51 H 1.08999 * 109.47428 * 182.85652 * 29 27 19 52 52 H 1.09000 * 109.47351 * 302.85669 * 29 27 19 53 53 H 1.08997 * 109.47070 * 62.85873 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5007 1.4441 0.1105 5 6 4.2733 1.2884 -1.0114 6 1 5.3415 1.4375 -0.9564 7 6 3.6819 0.9386 -2.2191 8 7 2.3770 0.8042 -2.2972 9 14 4.7417 0.6596 -3.7319 10 1 5.1421 -0.7688 -3.7991 11 1 3.9696 1.0151 -4.9496 12 1 5.9558 1.5107 -3.6494 13 6 4.0853 1.5986 1.3150 14 8 5.2901 1.5065 1.4208 15 6 3.2419 1.8857 2.5306 16 1 2.3093 1.3228 2.4927 17 6 4.0252 1.5637 3.8306 18 6 3.3403 2.5144 4.8472 19 7 3.0476 3.7408 4.0833 20 6 2.8861 4.9724 4.6064 21 8 2.6471 5.9152 3.8781 22 8 2.9891 5.1578 5.9359 23 6 2.8028 6.5107 6.4292 24 6 1.4038 7.0027 6.0527 25 6 2.9549 6.5240 7.9516 26 6 3.8527 7.4309 5.8032 27 6 2.9621 3.3980 2.6561 28 1 1.9651 3.6233 2.2776 29 6 4.0085 4.1881 1.8676 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 -0.8901 33 1 1.8933 -0.5137 0.8901 34 1 1.8934 -0.5139 -0.8900 35 1 1.7453 1.9320 -0.9283 36 1 1.6110 1.9796 0.8459 37 1 1.9641 0.5604 -3.1404 38 1 3.8941 0.5204 4.1176 39 1 5.0819 1.8071 3.7205 40 1 4.0140 2.7349 5.6752 41 1 2.4170 2.0683 5.2169 42 1 0.6559 6.3471 6.4987 43 1 1.2638 8.0181 6.4233 44 1 1.2950 6.9931 4.9682 45 1 3.9515 6.1733 8.2202 46 1 2.8155 7.5396 8.3218 47 1 2.2067 5.8685 8.3973 48 1 3.7438 7.4214 4.7187 49 1 3.7125 8.4466 6.1731 50 1 4.8493 7.0804 6.0714 51 1 3.9059 3.9674 0.8052 52 1 3.8590 5.2550 2.0332 53 1 5.0062 3.9047 2.2028 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492666497.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:55 Heat of formation + Delta-G solvation = -98.927025 kcal Electronic energy + Delta-G solvation = -32443.243328 eV Core-core repulsion = 28315.991272 eV Total energy + Delta-G solvation = -4127.252056 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.84331 -39.60083 -37.76446 -36.28370 -35.31518 -34.11823 -32.24929 -31.60984 -31.09837 -30.79223 -27.54402 -27.47102 -26.53161 -25.49051 -24.37961 -23.69834 -21.79459 -21.01551 -20.52043 -19.23120 -18.32641 -17.68576 -16.93766 -16.51162 -16.43267 -16.06384 -15.22453 -15.10373 -14.53892 -14.44209 -14.07005 -13.87327 -13.71451 -13.60776 -13.41627 -12.89374 -12.82980 -12.62288 -12.40688 -12.20885 -12.16309 -11.99551 -11.98033 -11.90268 -11.85244 -11.46931 -11.39274 -11.28977 -11.21198 -11.17322 -11.04736 -10.69546 -10.49124 -10.46343 -10.34891 -10.31504 -10.23990 -10.03461 -9.84305 -9.80934 -8.80143 -8.61469 -8.37051 -7.69198 -6.18427 -3.84018 2.15683 2.97950 3.14750 3.24716 3.29455 3.77799 3.92804 4.10196 4.60540 4.64246 4.74358 4.77991 4.79097 4.88564 5.16444 5.31168 5.34699 5.39163 5.40053 5.46725 5.54532 5.55197 5.61074 5.65178 5.75112 5.81506 5.83144 5.85464 5.94978 6.02956 6.04787 6.09282 6.19973 6.22294 6.27318 6.29980 6.40024 6.44385 6.49771 6.55553 6.66354 6.71431 6.84412 6.93841 6.97326 7.40673 7.62372 7.65928 7.79397 8.08217 8.47443 8.52832 9.17028 9.43806 9.96015 10.66450 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018428 B = 0.002970 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.096596 B = 9425.516010 C = 9726.322202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.121 4.121 3 C 0.122 3.878 4 N -0.442 5.442 5 C -0.290 4.290 6 H 0.102 0.898 7 C 0.022 3.978 8 N -0.877 5.877 9 Si 0.929 3.071 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.271 1.271 13 C 0.459 3.541 14 O -0.589 6.589 15 C -0.112 4.112 16 H 0.095 0.905 17 C -0.113 4.113 18 C 0.104 3.896 19 N -0.597 5.597 20 C 0.668 3.332 21 O -0.567 6.567 22 O -0.364 6.364 23 C 0.136 3.864 24 C -0.183 4.183 25 C -0.139 4.139 26 C -0.184 4.184 27 C 0.172 3.828 28 H 0.079 0.921 29 C -0.165 4.165 30 H 0.034 0.966 31 H 0.037 0.963 32 H 0.054 0.946 33 H 0.022 0.978 34 H 0.102 0.898 35 H 0.121 0.879 36 H 0.025 0.975 37 H 0.264 0.736 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.066 0.934 46 H 0.078 0.922 47 H 0.065 0.935 48 H 0.089 0.911 49 H 0.067 0.933 50 H 0.059 0.941 51 H 0.076 0.924 52 H 0.065 0.935 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.319 6.425 15.228 17.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C -0.002 4.002 4 N -0.159 5.159 5 C -0.417 4.417 6 H 0.120 0.880 7 C -0.178 4.178 8 N -0.519 5.519 9 Si 0.757 3.243 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.196 1.196 13 C 0.246 3.754 14 O -0.474 6.474 15 C -0.134 4.134 16 H 0.113 0.887 17 C -0.152 4.152 18 C -0.019 4.019 19 N -0.338 5.338 20 C 0.423 3.577 21 O -0.456 6.456 22 O -0.279 6.279 23 C 0.099 3.901 24 C -0.240 4.240 25 C -0.196 4.196 26 C -0.241 4.241 27 C 0.070 3.930 28 H 0.096 0.904 29 C -0.223 4.223 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.041 0.959 34 H 0.120 0.880 35 H 0.139 0.861 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.112 0.888 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.108 0.892 45 H 0.085 0.915 46 H 0.097 0.903 47 H 0.084 0.916 48 H 0.108 0.892 49 H 0.086 0.914 50 H 0.078 0.922 51 H 0.095 0.905 52 H 0.084 0.916 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.952 6.773 14.944 16.876 hybrid contribution 0.135 -0.233 -0.691 0.742 sum -3.818 6.539 14.253 16.140 Atomic orbital electron populations 1.21605 0.97609 0.99773 1.00493 1.22048 0.93595 0.98465 1.01822 1.21862 0.79794 0.96921 1.01584 1.43811 1.05979 1.60933 1.05160 1.19793 0.93095 1.43250 0.85604 0.88027 1.25247 0.96203 0.97050 0.99295 1.70073 1.08279 1.47672 1.25906 0.85861 0.79493 0.78719 0.80252 1.20531 1.20994 1.19619 1.19310 0.88082 0.84528 0.83453 1.90509 1.14726 1.57251 1.84920 1.22358 1.00341 0.94743 0.95979 0.88698 1.22732 1.01253 0.98992 0.92184 1.22416 0.99871 0.84517 0.95112 1.47339 1.72777 1.05030 1.08611 1.17449 0.76728 0.82636 0.80881 1.90874 1.54548 1.39601 1.60594 1.86300 1.85145 1.33911 1.22551 1.22019 0.96146 0.78095 0.93877 1.22512 0.95029 1.01291 1.05172 1.21844 1.03193 1.02804 0.91801 1.22515 0.98134 0.98995 1.04429 1.21390 1.00013 0.93635 0.77917 0.90352 1.22204 0.98908 1.00356 1.00865 0.94682 0.94358 0.92652 0.95939 0.87985 0.86116 0.95667 0.92470 0.89790 0.88820 0.90347 0.91386 0.92306 0.91354 0.89233 0.91543 0.90309 0.91570 0.89214 0.91359 0.92230 0.90480 0.91618 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.91 37.16 0.37 -1.93 16 2 C -0.12 -2.45 5.60 -26.73 -0.15 -2.60 16 3 C 0.12 2.60 4.42 -4.04 -0.02 2.58 16 4 N -0.44 -10.59 2.53 -114.81 -0.29 -10.88 16 5 C -0.29 -7.61 9.49 -14.93 -0.14 -7.75 16 6 H 0.10 2.84 7.23 -52.48 -0.38 2.46 16 7 C 0.02 0.56 5.31 -17.47 -0.09 0.46 16 8 N -0.88 -21.10 7.18 55.50 0.40 -20.70 16 9 Si 0.93 20.13 29.55 -169.99 -5.02 15.11 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 12 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 13 C 0.46 10.45 4.72 -10.98 -0.05 10.39 16 14 O -0.59 -15.27 14.83 5.54 0.08 -15.19 16 15 C -0.11 -2.00 2.24 -89.94 -0.20 -2.20 16 16 H 0.09 1.59 6.82 -51.93 -0.35 1.24 16 17 C -0.11 -1.74 6.37 -24.47 -0.16 -1.89 16 18 C 0.10 1.38 6.93 -2.41 -0.02 1.36 16 19 N -0.60 -9.49 3.08 -168.62 -0.52 -10.01 16 20 C 0.67 10.84 7.71 54.06 0.42 11.25 16 21 O -0.57 -10.14 10.71 -19.28 -0.21 -10.35 16 22 O -0.36 -5.11 9.42 -40.32 -0.38 -5.49 16 23 C 0.14 1.54 1.13 -90.62 -0.10 1.43 16 24 C -0.18 -2.00 8.37 37.16 0.31 -1.69 16 25 C -0.14 -1.14 8.85 37.16 0.33 -0.81 16 26 C -0.18 -2.08 8.37 37.16 0.31 -1.77 16 27 C 0.17 3.02 3.16 -66.96 -0.21 2.80 16 28 H 0.08 1.37 7.65 -51.93 -0.40 0.97 16 29 C -0.17 -3.20 8.15 37.16 0.30 -2.89 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.10 2.37 5.85 -51.93 -0.30 2.07 16 35 H 0.12 2.85 5.82 -51.93 -0.30 2.54 16 36 H 0.03 0.48 5.42 -51.93 -0.28 0.20 16 37 H 0.26 6.13 8.31 -40.82 -0.34 5.79 16 38 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.09 1.63 7.22 -51.93 -0.37 1.26 16 40 H 0.08 0.95 8.04 -51.93 -0.42 0.53 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 1.22 5.88 -51.93 -0.31 0.92 16 45 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 46 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 48 H 0.09 1.27 5.88 -51.93 -0.31 0.96 16 49 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 51 H 0.08 1.63 7.22 -51.93 -0.37 1.26 16 52 H 0.06 1.25 6.61 -51.93 -0.34 0.91 16 53 H 0.06 1.33 7.57 -51.93 -0.39 0.94 16 LS Contribution 400.74 15.07 6.04 6.04 Total: -1.00 -28.48 400.74 -8.17 -36.65 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -9.16 Total: 8.06 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 0.90 Total: 6.75 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: -0.41 Total: -41.59 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -0.50 Total: -31.02 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -28.48 -8.17 -36.65 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492666497.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.281 kcal (2) G-P(sol) polarization free energy of solvation -28.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds