Wall clock time and date at job start Sat Apr 11 2020 06:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46762 * 2 1 4 4 N 1.46496 * 109.46936 * 175.41260 * 3 2 1 5 5 C 1.37097 * 120.00519 * 83.95707 * 4 3 2 6 6 H 1.08003 * 120.00218 * 170.76364 * 5 4 3 7 7 C 1.38948 * 119.99810 * 350.75906 * 5 4 3 8 8 N 1.31414 * 120.00260 * 2.45480 * 7 5 4 9 9 Si 1.86807 * 120.00132 * 182.44804 * 7 5 4 10 10 H 1.48497 * 109.46993 * 90.00286 * 9 7 5 11 11 H 1.48502 * 109.47100 * 210.00465 * 9 7 5 12 12 H 1.48500 * 109.46687 * 330.00340 * 9 7 5 13 13 C 1.34779 * 119.99770 * 263.95519 * 4 3 2 14 14 O 1.21299 * 120.00067 * 174.84051 * 13 4 3 15 15 C 1.50703 * 119.99992 * 354.84643 * 13 4 3 16 16 H 1.09000 * 110.63769 * 38.12893 * 15 13 4 17 17 C 1.55155 * 110.71777 * 161.27084 * 15 13 4 18 18 C 1.55125 * 101.48070 * 153.73457 * 17 15 13 19 19 N 1.47426 * 104.94474 * 323.22272 * 18 17 15 20 20 C 1.34776 * 125.65052 * 204.04392 * 19 18 17 21 21 O 1.21507 * 120.00199 * 179.97438 * 20 19 18 22 22 O 1.34640 * 119.99648 * 359.95238 * 20 19 18 23 23 C 1.45205 * 116.99578 * 180.02562 * 22 20 19 24 24 C 1.52997 * 109.47367 * 60.00267 * 23 22 20 25 25 C 1.53002 * 109.47007 * 179.97438 * 23 22 20 26 26 C 1.52996 * 109.47131 * 299.99778 * 23 22 20 27 27 C 1.47021 * 108.70020 * 24.00362 * 19 18 17 28 28 H 1.09000 * 110.00844 * 118.43358 * 27 19 18 29 29 C 1.53002 * 109.88093 * 239.52261 * 27 19 18 30 30 H 1.08994 * 109.47606 * 300.00401 * 1 2 3 31 31 H 1.09001 * 109.46922 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47230 * 60.00572 * 1 2 3 33 33 H 1.09005 * 109.46745 * 119.99230 * 2 1 3 34 34 H 1.09000 * 109.47187 * 239.99749 * 2 1 3 35 35 H 1.08999 * 109.46731 * 295.40635 * 3 2 1 36 36 H 1.08992 * 109.47504 * 55.40561 * 3 2 1 37 37 H 0.96999 * 120.00106 * 179.97438 * 8 7 5 38 38 H 1.08999 * 111.00987 * 271.93839 * 17 15 13 39 39 H 1.09000 * 111.00639 * 35.79236 * 17 15 13 40 40 H 1.09001 * 110.42060 * 204.29296 * 18 17 15 41 41 H 1.09000 * 110.21161 * 82.04672 * 18 17 15 42 42 H 1.09003 * 109.47164 * 59.99615 * 24 23 22 43 43 H 1.08993 * 109.47633 * 179.97438 * 24 23 22 44 44 H 1.08999 * 109.46854 * 300.00151 * 24 23 22 45 45 H 1.09011 * 109.46999 * 60.00120 * 25 23 22 46 46 H 1.08992 * 109.47491 * 179.97438 * 25 23 22 47 47 H 1.09001 * 109.47607 * 300.00237 * 25 23 22 48 48 H 1.09000 * 109.47060 * 60.00493 * 26 23 22 49 49 H 1.08998 * 109.47283 * 179.97438 * 26 23 22 50 50 H 1.08998 * 109.47163 * 300.00333 * 26 23 22 51 51 H 1.08999 * 109.47428 * 182.85652 * 29 27 19 52 52 H 1.09000 * 109.47351 * 302.85669 * 29 27 19 53 53 H 1.08997 * 109.47070 * 62.85873 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5007 1.4441 0.1105 5 6 4.2733 1.2884 -1.0114 6 1 5.3415 1.4375 -0.9564 7 6 3.6819 0.9386 -2.2191 8 7 2.3770 0.8042 -2.2972 9 14 4.7417 0.6596 -3.7319 10 1 5.1421 -0.7688 -3.7991 11 1 3.9696 1.0151 -4.9496 12 1 5.9558 1.5107 -3.6494 13 6 4.0853 1.5986 1.3150 14 8 5.2901 1.5065 1.4208 15 6 3.2419 1.8857 2.5306 16 1 2.3093 1.3228 2.4927 17 6 4.0252 1.5637 3.8306 18 6 3.3403 2.5144 4.8472 19 7 3.0476 3.7408 4.0833 20 6 2.8861 4.9724 4.6064 21 8 2.6471 5.9152 3.8781 22 8 2.9891 5.1578 5.9359 23 6 2.8028 6.5107 6.4292 24 6 1.4038 7.0027 6.0527 25 6 2.9549 6.5240 7.9516 26 6 3.8527 7.4309 5.8032 27 6 2.9621 3.3980 2.6561 28 1 1.9651 3.6233 2.2776 29 6 4.0085 4.1881 1.8676 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 -0.8901 33 1 1.8933 -0.5137 0.8901 34 1 1.8934 -0.5139 -0.8900 35 1 1.7453 1.9320 -0.9283 36 1 1.6110 1.9796 0.8459 37 1 1.9641 0.5604 -3.1404 38 1 3.8941 0.5204 4.1176 39 1 5.0819 1.8071 3.7205 40 1 4.0140 2.7349 5.6752 41 1 2.4170 2.0683 5.2169 42 1 0.6559 6.3471 6.4987 43 1 1.2638 8.0181 6.4233 44 1 1.2950 6.9931 4.9682 45 1 3.9515 6.1733 8.2202 46 1 2.8155 7.5396 8.3218 47 1 2.2067 5.8685 8.3973 48 1 3.7438 7.4214 4.7187 49 1 3.7125 8.4466 6.1731 50 1 4.8493 7.0804 6.0714 51 1 3.9059 3.9674 0.8052 52 1 3.8590 5.2550 2.0332 53 1 5.0062 3.9047 2.2028 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492666497.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:53 Heat of formation + Delta-G solvation = -113.681457 kcal Electronic energy + Delta-G solvation = -32443.883128 eV Core-core repulsion = 28315.991272 eV Total energy + Delta-G solvation = -4127.891857 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.08314 -41.06781 -39.20536 -37.58064 -37.08046 -35.12026 -33.96842 -33.26896 -32.56432 -32.20505 -28.34184 -28.25635 -28.17650 -27.05557 -26.06980 -25.01516 -23.09862 -22.40552 -22.02236 -20.35303 -19.95709 -18.94713 -18.79301 -18.00905 -17.56699 -17.37906 -16.71748 -16.28707 -16.19079 -15.82944 -15.50529 -15.31854 -15.10782 -14.95192 -14.56970 -14.39136 -14.22905 -13.75052 -13.65731 -13.48586 -13.44655 -13.29418 -13.06927 -13.02244 -12.97984 -12.86281 -12.81443 -12.75742 -12.57734 -12.42614 -12.31620 -12.21068 -12.10104 -12.04443 -11.90910 -11.85381 -11.62992 -11.51436 -11.35858 -11.03290 -10.61337 -10.29297 -9.81911 -9.55297 -8.08713 -5.81624 0.99114 1.38407 1.43913 1.53594 1.74606 2.03216 2.29132 2.83803 3.09608 3.15193 3.49777 3.57267 3.78935 3.82241 3.86140 3.97868 4.07675 4.19398 4.27135 4.36570 4.47778 4.50987 4.52867 4.62975 4.64067 4.65358 4.69434 4.73070 4.77113 4.79072 4.86383 4.88197 4.91113 4.99511 5.01651 5.12622 5.16332 5.18247 5.22373 5.29952 5.31381 5.37082 5.38364 5.45189 5.47634 5.53527 5.77325 6.06344 6.17867 6.43364 6.63426 7.25232 7.26098 7.58722 8.11274 8.72451 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018428 B = 0.002970 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.096596 B = 9425.516010 C = 9726.322202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.115 4.115 3 C 0.126 3.874 4 N -0.452 5.452 5 C -0.329 4.329 6 H 0.070 0.930 7 C -0.001 4.001 8 N -0.872 5.872 9 Si 0.982 3.018 10 H -0.277 1.277 11 H -0.271 1.271 12 H -0.281 1.281 13 C 0.452 3.548 14 O -0.630 6.630 15 C -0.105 4.105 16 H 0.115 0.885 17 C -0.109 4.109 18 C 0.110 3.890 19 N -0.601 5.601 20 C 0.665 3.335 21 O -0.589 6.589 22 O -0.362 6.362 23 C 0.123 3.877 24 C -0.179 4.179 25 C -0.133 4.133 26 C -0.181 4.181 27 C 0.180 3.820 28 H 0.083 0.917 29 C -0.150 4.150 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.024 0.976 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.049 0.951 37 H 0.268 0.732 38 H 0.108 0.892 39 H 0.066 0.934 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.064 0.936 43 H 0.092 0.908 44 H 0.058 0.942 45 H 0.068 0.932 46 H 0.103 0.897 47 H 0.072 0.928 48 H 0.056 0.944 49 H 0.093 0.907 50 H 0.058 0.942 51 H 0.051 0.949 52 H 0.063 0.937 53 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.267 6.354 17.547 19.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.153 4.153 3 C 0.004 3.996 4 N -0.169 5.169 5 C -0.458 4.458 6 H 0.088 0.912 7 C -0.202 4.202 8 N -0.512 5.512 9 Si 0.808 3.192 10 H -0.203 1.203 11 H -0.196 1.196 12 H -0.206 1.206 13 C 0.241 3.759 14 O -0.518 6.518 15 C -0.127 4.127 16 H 0.133 0.867 17 C -0.147 4.147 18 C -0.011 4.011 19 N -0.342 5.342 20 C 0.421 3.579 21 O -0.480 6.480 22 O -0.277 6.277 23 C 0.087 3.913 24 C -0.236 4.236 25 C -0.190 4.190 26 C -0.238 4.238 27 C 0.077 3.923 28 H 0.101 0.899 29 C -0.209 4.209 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.042 0.958 34 H 0.088 0.912 35 H 0.116 0.884 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.127 0.873 39 H 0.085 0.915 40 H 0.112 0.888 41 H 0.117 0.883 42 H 0.083 0.917 43 H 0.111 0.889 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.122 0.878 47 H 0.091 0.909 48 H 0.075 0.925 49 H 0.112 0.888 50 H 0.077 0.923 51 H 0.070 0.930 52 H 0.082 0.918 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.942 6.697 17.285 19.466 hybrid contribution 0.767 -0.146 -1.417 1.618 sum -5.175 6.550 15.867 17.929 Atomic orbital electron populations 1.21514 0.94625 1.01125 1.01283 1.21891 0.96118 0.97013 1.00281 1.21834 0.78474 0.97898 1.01441 1.44001 1.06894 1.60930 1.05085 1.19610 0.92304 1.46318 0.87524 0.91166 1.25790 0.97399 0.96260 1.00737 1.70192 1.08493 1.46059 1.26455 0.85089 0.77997 0.78261 0.77891 1.20322 1.19602 1.20633 1.20104 0.88115 0.83208 0.84425 1.90475 1.16815 1.58731 1.85790 1.22281 1.00571 0.95176 0.94644 0.86690 1.22728 0.99500 1.01077 0.91381 1.22565 1.01400 0.82798 0.94364 1.47315 1.72871 1.05974 1.08006 1.17565 0.76433 0.82297 0.81589 1.90876 1.55386 1.40366 1.61390 1.86314 1.84787 1.35741 1.20848 1.22464 0.96223 0.76830 0.95827 1.22462 0.94992 1.02963 1.03152 1.21868 1.03580 1.04614 0.88895 1.22482 0.98289 1.00701 1.02357 1.21163 0.99161 0.92960 0.79054 0.89933 1.22008 0.98687 1.00583 0.99575 0.92417 0.92750 0.93308 0.95760 0.91155 0.88367 0.93238 0.92066 0.87344 0.91517 0.88766 0.88313 0.91693 0.88944 0.92323 0.91341 0.87825 0.90887 0.92468 0.88819 0.92288 0.93034 0.91788 0.93663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.98 9.91 71.98 0.71 -3.27 16 2 C -0.11 -4.55 5.60 30.60 0.17 -4.37 16 3 C 0.13 5.39 4.42 86.38 0.38 5.78 16 4 N -0.45 -22.38 2.53 -635.54 -1.61 -23.99 16 5 C -0.33 -18.13 9.49 84.04 0.80 -17.34 16 6 H 0.07 4.22 7.23 -2.91 -0.02 4.19 16 7 C 0.00 -0.05 5.31 84.93 0.45 0.40 16 8 N -0.87 -42.24 7.18 21.66 0.16 -42.09 16 9 Si 0.98 42.05 29.55 68.60 2.03 44.08 16 10 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 12 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 13 C 0.45 21.23 4.72 87.66 0.41 21.64 16 14 O -0.63 -34.36 14.83 -3.09 -0.05 -34.41 16 15 C -0.10 -3.67 2.24 -10.35 -0.02 -3.69 16 16 H 0.12 3.58 6.82 -2.39 -0.02 3.57 16 17 C -0.11 -3.18 6.37 32.06 0.20 -2.97 16 18 C 0.11 2.63 6.93 86.93 0.60 3.23 16 19 N -0.60 -18.35 3.08 -917.80 -2.83 -21.18 16 20 C 0.67 21.03 7.71 129.79 1.00 22.03 16 21 O -0.59 -21.24 10.71 19.82 0.21 -21.03 16 22 O -0.36 -9.52 9.42 -55.49 -0.52 -10.04 16 23 C 0.12 2.53 1.13 -10.80 -0.01 2.52 16 24 C -0.18 -3.57 8.37 71.98 0.60 -2.97 16 25 C -0.13 -1.72 8.85 71.98 0.64 -1.09 16 26 C -0.18 -3.90 8.37 71.98 0.60 -3.29 16 27 C 0.18 6.23 3.16 45.34 0.14 6.37 16 28 H 0.08 2.81 7.65 -2.39 -0.02 2.79 16 29 C -0.15 -6.08 8.15 71.98 0.59 -5.50 16 30 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.07 3.26 5.85 -2.39 -0.01 3.25 16 35 H 0.10 4.68 5.82 -2.39 -0.01 4.67 16 36 H 0.05 1.85 5.42 -2.39 -0.01 1.83 16 37 H 0.27 12.36 8.31 -92.71 -0.77 11.59 16 38 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 39 H 0.07 2.35 7.22 -2.39 -0.02 2.33 16 40 H 0.09 2.00 8.04 -2.39 -0.02 1.98 16 41 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.06 1.57 5.88 -2.39 -0.01 1.55 16 45 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 46 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.06 1.63 5.88 -2.39 -0.01 1.62 16 49 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 50 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 51 H 0.05 2.32 7.22 -2.39 -0.02 2.30 16 52 H 0.06 2.56 6.61 -2.39 -0.02 2.54 16 53 H 0.04 1.97 7.57 -2.39 -0.02 1.95 16 Total: -1.00 -65.89 400.74 5.55 -60.34 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: 0.89 Total: 30.82 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: 7.27 Total: 17.49 kcal Atomic # 7 Polarization: -82.98 SS G_CDS: -4.28 Total: -87.26 kcal Atomic # 8 Polarization: -65.12 SS G_CDS: -0.36 Total: -65.48 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -65.89 5.55 -60.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492666497.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.340 kcal (2) G-P(sol) polarization free energy of solvation -65.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds