Wall clock time and date at job start Sat Apr 11 2020 06:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46713 * 2 1 4 4 H 1.08998 * 109.47514 * 304.99989 * 3 2 1 5 5 C 1.50704 * 109.47041 * 185.00043 * 3 2 1 6 6 H 1.08003 * 119.99791 * 240.00161 * 5 3 2 7 7 C 1.37878 * 119.99855 * 59.99944 * 5 3 2 8 8 N 1.31509 * 120.00035 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99571 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47359 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46817 * 120.00079 * 9 7 5 12 12 H 1.48493 * 109.47195 * 239.99964 * 9 7 5 13 13 N 1.46503 * 109.46984 * 65.00125 * 3 2 1 14 14 C 1.34774 * 120.00062 * 274.99237 * 13 3 2 15 15 O 1.21287 * 119.99796 * 0.02562 * 14 13 3 16 16 C 1.50695 * 120.00178 * 180.02562 * 14 13 3 17 17 H 1.09002 * 110.64209 * 336.42091 * 16 14 13 18 18 C 1.55162 * 110.72325 * 213.28307 * 16 14 13 19 19 C 1.54914 * 101.57837 * 276.96272 * 18 16 14 20 20 N 1.47423 * 104.82804 * 322.98687 * 19 18 16 21 21 C 1.34779 * 125.64537 * 204.09127 * 20 19 18 22 22 O 1.21515 * 120.00075 * 179.75332 * 21 20 19 23 23 O 1.34641 * 119.99839 * 0.03141 * 21 20 19 24 24 C 1.45203 * 116.99908 * 179.97438 * 23 21 20 25 25 C 1.53008 * 109.47115 * 59.99604 * 24 23 21 26 26 C 1.52997 * 109.47118 * 179.97438 * 24 23 21 27 27 C 1.53003 * 109.47190 * 300.00131 * 24 23 21 28 28 C 1.47019 * 108.70782 * 24.35978 * 20 19 18 29 29 H 1.08996 * 109.88108 * 239.29656 * 28 20 19 30 30 C 1.53000 * 109.88258 * 118.12421 * 28 20 19 31 31 H 1.08998 * 109.47350 * 299.99597 * 1 2 3 32 32 H 1.09005 * 109.47019 * 60.00163 * 1 2 3 33 33 H 1.09003 * 109.46738 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47350 * 240.00403 * 2 1 3 35 35 H 1.08998 * 109.47302 * 120.00136 * 2 1 3 36 36 H 0.97000 * 119.99648 * 179.97438 * 8 7 5 37 37 H 0.96994 * 119.99931 * 95.00208 * 13 3 2 38 38 H 1.08991 * 111.00518 * 158.88766 * 18 16 14 39 39 H 1.08998 * 110.99941 * 35.02882 * 18 16 14 40 40 H 1.09001 * 110.36439 * 204.15028 * 19 18 16 41 41 H 1.08992 * 110.36824 * 81.82567 * 19 18 16 42 42 H 1.08999 * 109.46844 * 59.99765 * 25 24 23 43 43 H 1.08995 * 109.47093 * 179.97438 * 25 24 23 44 44 H 1.08996 * 109.47088 * 299.99997 * 25 24 23 45 45 H 1.09003 * 109.46689 * 60.00325 * 26 24 23 46 46 H 1.09004 * 109.46718 * 179.97438 * 26 24 23 47 47 H 1.08995 * 109.47393 * 299.99972 * 26 24 23 48 48 H 1.08999 * 109.47286 * 59.99218 * 27 24 23 49 49 H 1.08995 * 109.47094 * 180.02562 * 27 24 23 50 50 H 1.09007 * 109.46685 * 299.99588 * 27 24 23 51 51 H 1.09003 * 109.46622 * 65.88198 * 30 28 20 52 52 H 1.09000 * 109.47045 * 185.87627 * 30 28 20 53 53 H 1.08997 * 109.47380 * 305.87807 * 30 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3376 -2.1733 9 14 6.0049 0.8815 -1.3818 10 1 6.5987 1.5466 -0.1942 11 1 6.4971 -0.5172 -1.4629 12 1 6.3990 1.6170 -2.6101 13 7 1.6523 2.0974 1.2519 14 6 0.4351 2.6644 1.3670 15 8 -0.3396 2.6320 0.4344 16 6 0.0366 3.3386 2.6545 17 1 0.6159 2.9449 3.4897 18 6 -1.4840 3.1713 2.9140 19 6 -2.0738 4.3195 2.0576 20 7 -1.1115 5.4274 2.1978 21 6 -1.3901 6.7356 2.0317 22 8 -0.5154 7.5664 2.1774 23 8 -2.6390 7.1223 1.7097 24 6 -2.8666 8.5471 1.5470 25 6 -1.9693 9.0826 0.4293 26 6 -4.3328 8.7912 1.1844 27 6 -2.5372 9.2688 2.8553 28 6 0.2039 4.8687 2.5427 29 1 0.5401 5.2737 3.4971 30 6 1.2160 5.2053 1.4457 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5137 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 3.8293 -0.0602 -2.9502 37 1 2.2718 2.1232 1.9978 38 1 -1.7179 3.3111 3.9693 39 1 -1.8359 2.2013 2.5626 40 1 -3.0508 4.6148 2.4403 41 1 -2.1507 4.0136 1.0143 42 1 -2.2039 8.5684 -0.5027 43 1 -2.1405 10.1520 0.3069 44 1 -0.9247 8.9086 0.6873 45 1 -4.9722 8.4096 1.9805 46 1 -4.5037 9.8608 1.0628 47 1 -4.5670 8.2771 0.2523 48 1 -1.4926 9.0948 3.1132 49 1 -2.7085 10.3383 2.7333 50 1 -3.1765 8.8873 3.6515 51 1 1.3775 6.2830 1.4188 52 1 2.1597 4.7016 1.6551 53 1 0.8319 4.8712 0.4819 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492695021.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:06 Heat of formation + Delta-G solvation = -142.967336 kcal Electronic energy + Delta-G solvation = -32130.704541 eV Core-core repulsion = 28001.542754 eV Total energy + Delta-G solvation = -4129.161788 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.11893 -41.14876 -39.16506 -37.54204 -36.66514 -35.13407 -34.29003 -33.22190 -32.40838 -32.11921 -29.01127 -28.36559 -28.28575 -27.20311 -25.27179 -24.73492 -23.54011 -22.36441 -21.41582 -20.73168 -20.24223 -18.92997 -18.75638 -17.98052 -17.39932 -17.20852 -17.06403 -16.54449 -16.18330 -16.01766 -15.61382 -15.19972 -14.92140 -14.75805 -14.58919 -14.33696 -14.25649 -14.11494 -13.68239 -13.43133 -13.35418 -13.25974 -13.14005 -13.06719 -12.90738 -12.87833 -12.84999 -12.73891 -12.67197 -12.48426 -12.41730 -12.24391 -12.20099 -12.10379 -11.97525 -11.89412 -11.53028 -11.37716 -11.05145 -10.99938 -10.55873 -10.34357 -9.79239 -9.52894 -8.14664 -6.30787 1.05617 1.42746 1.44983 1.55626 1.75525 1.89437 2.36899 2.67629 2.87673 3.15292 3.43922 3.52356 3.76195 3.80012 3.85503 3.95369 4.16740 4.20182 4.30746 4.41769 4.49456 4.52276 4.54868 4.61828 4.63093 4.66196 4.71097 4.76076 4.76172 4.81554 4.84438 4.87961 4.91452 5.00955 5.09690 5.12127 5.18337 5.21263 5.26720 5.28548 5.32583 5.36577 5.46974 5.49292 5.60871 5.69697 5.85409 5.98589 6.22147 6.43252 6.79140 7.08913 7.26548 7.37084 7.68959 8.90481 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016851 B = 0.002831 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.258355 B = 9889.070918 C =10570.108187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.283 3.717 4 H -0.007 1.007 5 C -0.542 4.542 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.964 3.036 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.288 1.288 13 N -0.704 5.704 14 C 0.513 3.487 15 O -0.579 6.579 16 C -0.116 4.116 17 H 0.148 0.852 18 C -0.100 4.100 19 C 0.103 3.897 20 N -0.600 5.600 21 C 0.663 3.337 22 O -0.588 6.588 23 O -0.369 6.369 24 C 0.122 3.878 25 C -0.181 4.181 26 C -0.134 4.134 27 C -0.175 4.175 28 C 0.175 3.825 29 H 0.111 0.889 30 C -0.162 4.162 31 H 0.051 0.949 32 H 0.021 0.979 33 H 0.042 0.958 34 H 0.066 0.934 35 H 0.042 0.958 36 H 0.263 0.737 37 H 0.403 0.597 38 H 0.119 0.881 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.094 0.906 44 H 0.058 0.942 45 H 0.073 0.927 46 H 0.104 0.896 47 H 0.062 0.938 48 H 0.061 0.939 49 H 0.091 0.909 50 H 0.065 0.935 51 H 0.059 0.941 52 H 0.079 0.921 53 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.085 12.275 14.394 23.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.160 4.160 3 C 0.179 3.821 4 H 0.011 0.989 5 C -0.581 4.581 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.790 3.210 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.214 1.214 13 N -0.353 5.353 14 C 0.300 3.700 15 O -0.459 6.459 16 C -0.138 4.138 17 H 0.165 0.835 18 C -0.138 4.138 19 C -0.019 4.019 20 N -0.340 5.340 21 C 0.419 3.581 22 O -0.480 6.480 23 O -0.283 6.283 24 C 0.086 3.914 25 C -0.238 4.238 26 C -0.191 4.191 27 C -0.232 4.232 28 C 0.072 3.928 29 H 0.129 0.871 30 C -0.220 4.220 31 H 0.070 0.930 32 H 0.041 0.959 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.237 0.763 38 H 0.137 0.863 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.113 0.887 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.123 0.877 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.110 0.890 50 H 0.084 0.916 51 H 0.078 0.922 52 H 0.098 0.902 53 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -13.411 12.556 13.564 22.836 hybrid contribution 1.481 -0.152 -0.822 1.701 sum -11.929 12.404 12.743 21.414 Atomic orbital electron populations 1.21659 0.96764 0.98998 1.00388 1.21773 0.93938 0.99179 1.01126 1.18258 0.93235 0.89066 0.81536 0.98862 1.21636 0.91741 1.38298 1.06405 0.91064 1.25721 1.02883 0.94647 0.95236 1.70056 1.36782 1.38690 1.09870 0.85414 0.79778 0.77747 0.78107 1.18369 1.20513 1.21440 1.46299 1.15592 1.56009 1.17370 1.20650 0.81712 0.77942 0.89728 1.90661 1.52423 1.60731 1.42118 1.22584 1.00872 0.93432 0.96887 0.83452 1.22691 0.90741 0.98636 1.01722 1.22449 0.92867 0.85749 1.00804 1.47364 1.12417 1.02807 1.71455 1.17613 0.81634 0.82386 0.76463 1.90865 1.48150 1.51026 1.57940 1.86324 1.28945 1.30493 1.82582 1.22452 0.97890 0.74525 0.96505 1.22482 1.00879 1.02930 0.97538 1.21875 0.90563 1.03988 1.02692 1.22440 1.03160 1.01799 0.95840 1.21408 0.81233 0.91217 0.98911 0.87148 1.22163 0.99638 1.02252 0.97961 0.93020 0.95937 0.93882 0.91533 0.93937 0.92807 0.76254 0.86279 0.89206 0.88726 0.92653 0.92964 0.88696 0.92271 0.90791 0.87709 0.91867 0.91961 0.88986 0.91580 0.92183 0.90240 0.95267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.17 8.51 71.98 0.61 -4.56 16 2 C -0.12 -5.76 5.45 30.60 0.17 -5.59 16 3 C 0.28 13.91 2.24 44.25 0.10 14.01 16 4 H -0.01 -0.39 7.58 -2.39 -0.02 -0.41 16 5 C -0.54 -27.99 8.73 25.60 0.22 -27.76 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 7 C 0.02 0.80 5.29 84.66 0.45 1.25 16 8 N -0.92 -52.19 11.29 21.45 0.24 -51.95 16 9 Si 0.96 42.02 29.54 68.60 2.03 44.04 16 10 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 11 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 12 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 13 N -0.70 -26.54 4.82 -446.09 -2.15 -28.68 16 14 C 0.51 17.89 3.29 87.66 0.29 18.18 16 15 O -0.58 -24.99 11.85 -3.05 -0.04 -25.03 16 16 C -0.12 -2.73 3.36 -10.35 -0.03 -2.76 16 17 H 0.15 2.31 8.13 -2.39 -0.02 2.29 16 18 C -0.10 -1.98 6.34 31.99 0.20 -1.78 16 19 C 0.10 2.58 6.52 86.86 0.57 3.15 16 20 N -0.60 -16.89 3.06 -918.21 -2.81 -19.70 16 21 C 0.66 20.27 7.71 129.79 1.00 21.27 16 22 O -0.59 -19.84 11.01 19.79 0.22 -19.62 16 23 O -0.37 -10.04 9.42 -55.50 -0.52 -10.56 16 24 C 0.12 2.59 1.13 -10.79 -0.01 2.58 16 25 C -0.18 -4.09 8.37 71.98 0.60 -3.49 16 26 C -0.13 -1.92 8.85 71.98 0.64 -1.28 16 27 C -0.18 -3.33 8.37 71.98 0.60 -2.73 16 28 C 0.17 4.56 3.38 45.34 0.15 4.71 16 29 H 0.11 2.39 8.14 -2.39 -0.02 2.38 16 30 C -0.16 -5.28 8.12 71.98 0.58 -4.70 16 31 H 0.05 2.05 5.64 -2.39 -0.01 2.04 16 32 H 0.02 1.05 7.85 -2.38 -0.02 1.03 16 33 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 3.61 5.95 -2.39 -0.01 3.60 16 35 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 37 H 0.40 12.66 8.53 -92.71 -0.79 11.87 16 38 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.09 1.89 7.99 -2.39 -0.02 1.88 16 40 H 0.09 1.96 8.04 -2.39 -0.02 1.95 16 41 H 0.06 1.77 6.96 -2.39 -0.02 1.75 16 42 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.06 1.71 5.89 -2.39 -0.01 1.69 16 45 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 47 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.06 1.55 5.87 -2.39 -0.01 1.53 16 49 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 50 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 51 H 0.06 2.04 7.04 -2.39 -0.02 2.02 16 52 H 0.08 2.45 7.87 -2.39 -0.02 2.43 16 53 H 0.03 1.16 7.02 -2.39 -0.02 1.15 16 Total: -1.00 -70.39 403.95 3.21 -67.17 By element: Atomic # 1 Polarization: 33.71 SS G_CDS: 0.10 Total: 33.82 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 6.14 Total: 10.51 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -4.72 Total: -100.33 kcal Atomic # 8 Polarization: -54.87 SS G_CDS: -0.34 Total: -55.21 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -70.39 3.21 -67.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492695021.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.794 kcal (2) G-P(sol) polarization free energy of solvation -70.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds