Wall clock time and date at job start Sat Apr 11 2020 06:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53012 * 109.46905 * 2 1 4 4 H 1.09003 * 109.46783 * 305.56645 * 3 2 1 5 5 N 1.46498 * 109.46872 * 65.56848 * 3 2 1 6 6 C 1.34773 * 120.00163 * 274.99650 * 5 3 2 7 7 O 1.21514 * 119.99798 * 0.02562 * 6 5 3 8 8 O 1.34638 * 120.00262 * 180.02562 * 6 5 3 9 9 C 1.45196 * 117.00347 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47255 * 59.99907 * 9 8 6 11 11 C 1.52992 * 109.47459 * 180.02562 * 9 8 6 12 12 C 1.53006 * 109.46992 * 300.00108 * 9 8 6 13 13 C 1.50695 * 109.46885 * 185.57313 * 3 2 1 14 14 O 1.21283 * 119.99814 * 262.75611 * 13 3 2 15 15 N 1.34775 * 120.00585 * 82.48193 * 13 3 2 16 16 C 1.46931 * 120.62624 * 355.01343 * 15 13 3 17 17 C 1.53628 * 108.53970 * 126.36839 * 16 15 13 18 18 C 1.53036 * 109.24183 * 54.85783 * 17 16 15 19 19 C 1.50706 * 109.44877 * 178.49571 * 18 17 16 20 20 H 1.08003 * 119.99792 * 120.05640 * 19 18 17 21 21 C 1.37874 * 119.99758 * 300.06266 * 19 18 17 22 22 N 1.31519 * 120.00089 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 120.00284 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46922 * 90.00210 * 23 21 19 25 25 H 1.48498 * 109.47285 * 210.00466 * 23 21 19 26 26 H 1.48503 * 109.47030 * 330.00560 * 23 21 19 27 27 C 1.53046 * 109.53664 * 298.50876 * 18 17 16 28 28 C 1.46925 * 120.63546 * 175.29369 * 15 13 3 29 29 H 1.08999 * 109.47082 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47509 * 300.00082 * 1 2 3 31 31 H 1.09008 * 109.46978 * 60.00290 * 1 2 3 32 32 H 1.08997 * 109.47509 * 239.99918 * 2 1 3 33 33 H 1.09000 * 109.47097 * 119.99367 * 2 1 3 34 34 H 0.96997 * 119.99758 * 95.00477 * 5 3 2 35 35 H 1.08995 * 109.47085 * 59.99830 * 10 9 8 36 36 H 1.08997 * 109.47289 * 180.02562 * 10 9 8 37 37 H 1.09000 * 109.47015 * 300.00068 * 10 9 8 38 38 H 1.09006 * 109.47426 * 59.99467 * 11 9 8 39 39 H 1.09001 * 109.47819 * 180.02562 * 11 9 8 40 40 H 1.08999 * 109.47183 * 299.99956 * 11 9 8 41 41 H 1.09000 * 109.47348 * 59.99889 * 12 9 8 42 42 H 1.08997 * 109.47059 * 179.97438 * 12 9 8 43 43 H 1.08998 * 109.46813 * 299.99513 * 12 9 8 44 44 H 1.09004 * 109.58637 * 246.20023 * 16 15 13 45 45 H 1.09000 * 109.58641 * 6.62519 * 16 15 13 46 46 H 1.08992 * 109.63377 * 294.86380 * 17 16 15 47 47 H 1.09003 * 109.42801 * 174.72482 * 17 16 15 48 48 H 1.09003 * 109.46224 * 58.53162 * 18 17 16 49 49 H 0.96992 * 120.00085 * 179.97438 * 22 21 19 50 50 H 1.09001 * 109.49517 * 301.41034 * 27 18 17 51 51 H 1.08999 * 109.52182 * 181.33974 * 27 18 17 52 52 H 1.09001 * 109.58520 * 353.37519 * 28 15 13 53 53 H 1.08997 * 109.58727 * 113.65524 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5975 1.9844 -0.8360 5 7 1.6641 2.0934 1.2575 6 6 0.4480 2.6599 1.3860 7 8 -0.3369 2.6304 0.4588 8 8 0.1027 3.2584 2.5415 9 6 -1.2230 3.8468 2.6087 10 6 -2.2754 2.7605 2.3780 11 6 -1.4325 4.4758 3.9875 12 6 -1.3578 4.9246 1.5312 13 6 3.5406 1.4449 -0.1380 14 8 4.2401 1.5444 0.8478 15 7 4.1056 1.3307 -1.3563 16 6 3.2771 1.0941 -2.5464 17 6 3.6059 2.1703 -3.5923 18 6 5.1119 2.1658 -3.8643 19 6 5.4348 3.1948 -4.9169 20 1 6.1099 4.0066 -4.6894 21 6 4.8682 3.1000 -6.1703 22 7 5.1503 3.9977 -7.0891 23 14 3.7009 1.6957 -6.5639 24 1 2.3102 2.1021 -6.2383 25 1 3.7944 1.3644 -8.0084 26 1 4.0701 0.5044 -5.7579 27 6 5.8658 2.5011 -2.5753 28 6 5.5622 1.4343 -1.5187 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 2.2906 2.1166 1.9977 35 1 -2.1794 1.9927 3.1455 36 1 -3.2706 3.2023 2.4280 37 1 -2.1260 2.3128 1.3955 38 1 -0.6826 5.2498 4.1516 39 1 -2.4278 4.9172 4.0382 40 1 -1.3363 3.7083 4.7555 41 1 -1.2084 4.4769 0.5487 42 1 -2.3531 5.3660 1.5813 43 1 -0.6081 5.6985 1.6956 44 1 3.4952 0.1066 -2.9531 45 1 2.2230 1.1554 -2.2759 46 1 3.3069 3.1490 -3.2172 47 1 3.0687 1.9545 -4.5159 48 1 5.4145 1.1794 -4.2159 49 1 4.7520 3.9308 -7.9709 50 1 5.5455 3.4768 -2.2098 51 1 6.9372 2.5211 -2.7747 52 1 6.0162 1.7201 -0.5699 53 1 5.9632 0.4733 -1.8409 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495468863.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:27 Heat of formation + Delta-G solvation = -141.859842 kcal Electronic energy + Delta-G solvation = -31984.134006 eV Core-core repulsion = 27855.020243 eV Total energy + Delta-G solvation = -4129.113763 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.16962 -41.30837 -39.06508 -38.31027 -36.34325 -35.44158 -35.12129 -33.57699 -33.00392 -32.10271 -29.10971 -28.33172 -28.27584 -27.80105 -24.65093 -24.29450 -23.80232 -22.65774 -21.36184 -21.26331 -20.12486 -19.41782 -18.84048 -18.09793 -17.73455 -17.45160 -17.09795 -16.66130 -16.32122 -16.13584 -15.56152 -15.50365 -15.22295 -15.06181 -14.79571 -14.75317 -14.45068 -14.28714 -14.12955 -13.75411 -13.64169 -13.43674 -13.33562 -13.09809 -12.99827 -12.90571 -12.88420 -12.79481 -12.54313 -12.44994 -12.30091 -12.26101 -12.10724 -11.86683 -11.83703 -11.50181 -11.34349 -11.25421 -11.06084 -11.02621 -10.86436 -10.63726 -10.27161 -9.67717 -8.27328 -6.32540 0.93802 1.33858 1.39988 1.42080 1.50878 1.73289 1.94826 2.35810 3.07333 3.09506 3.19334 3.76991 3.79686 3.82014 3.84295 3.97106 3.98645 4.08261 4.17486 4.25219 4.29076 4.43333 4.45912 4.53331 4.57696 4.64817 4.71919 4.74117 4.79084 4.79412 4.81016 4.87096 4.90510 4.94556 4.96237 5.01764 5.05203 5.09808 5.11868 5.21709 5.31633 5.35892 5.38204 5.41857 5.52966 5.57697 5.68011 5.74234 6.28135 6.31891 6.32314 6.75067 6.91780 7.29628 7.33188 8.89829 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014267 B = 0.002990 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.145768 B = 9363.704948 C = 9855.840526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.126 4.126 3 C 0.149 3.851 4 H 0.111 0.889 5 N -0.694 5.694 6 C 0.653 3.347 7 O -0.574 6.574 8 O -0.371 6.371 9 C 0.125 3.875 10 C -0.178 4.178 11 C -0.137 4.137 12 C -0.182 4.182 13 C 0.515 3.485 14 O -0.568 6.568 15 N -0.595 5.595 16 C 0.101 3.899 17 C -0.135 4.135 18 C 0.014 3.986 19 C -0.520 4.520 20 H 0.025 0.975 21 C 0.004 3.996 22 N -0.956 5.956 23 Si 0.950 3.050 24 H -0.263 1.263 25 H -0.305 1.305 26 H -0.228 1.228 27 C -0.107 4.107 28 C 0.118 3.882 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.415 0.585 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.103 0.897 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.091 0.909 43 H 0.055 0.945 44 H 0.096 0.904 45 H 0.104 0.896 46 H 0.050 0.950 47 H 0.053 0.947 48 H 0.038 0.962 49 H 0.264 0.736 50 H 0.039 0.961 51 H 0.068 0.932 52 H 0.085 0.915 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.415 -8.272 21.085 27.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.164 4.164 3 C 0.041 3.959 4 H 0.129 0.871 5 N -0.355 5.355 6 C 0.407 3.593 7 O -0.464 6.464 8 O -0.285 6.285 9 C 0.089 3.911 10 C -0.235 4.235 11 C -0.194 4.194 12 C -0.239 4.239 13 C 0.303 3.697 14 O -0.448 6.448 15 N -0.327 5.327 16 C -0.021 4.021 17 C -0.173 4.173 18 C -0.005 4.005 19 C -0.558 4.558 20 H 0.044 0.956 21 C -0.192 4.192 22 N -0.596 5.596 23 Si 0.775 3.225 24 H -0.189 1.189 25 H -0.233 1.233 26 H -0.151 1.151 27 C -0.146 4.146 28 C -0.004 4.004 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.252 0.748 35 H 0.082 0.918 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.121 0.879 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.110 0.890 43 H 0.074 0.926 44 H 0.114 0.886 45 H 0.122 0.878 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.056 0.944 49 H 0.073 0.927 50 H 0.058 0.942 51 H 0.087 0.913 52 H 0.104 0.896 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.504 -8.127 21.027 27.360 hybrid contribution 0.263 0.425 -0.745 0.897 sum -15.241 -7.701 20.283 26.514 Atomic orbital electron populations 1.21729 0.93614 1.01762 1.02230 1.21953 0.97817 0.92231 1.04447 1.20893 0.90696 0.97029 0.87268 0.87119 1.44390 1.14771 1.59084 1.17263 1.17955 0.82594 0.77047 0.81712 1.90919 1.51039 1.63632 1.40775 1.86322 1.38306 1.68277 1.35634 1.22428 0.77423 0.92966 0.98252 1.22470 0.99036 0.98611 1.03423 1.21892 1.03900 1.01129 0.92446 1.22498 1.03658 0.98156 0.99635 1.20646 0.90398 0.75797 0.82874 1.90656 1.64611 1.51856 1.37669 1.48108 1.08371 1.69600 1.06622 1.22218 0.95599 0.99690 0.84574 1.22318 0.98838 0.98572 0.97534 1.19105 0.92083 0.96304 0.92974 1.21389 1.26999 1.10826 0.96623 0.95635 1.26033 0.98468 0.98754 0.95944 1.70079 1.46471 1.37841 1.05219 0.85833 0.79316 0.80983 0.76322 1.18868 1.23311 1.15134 1.21713 1.00487 0.97526 0.94837 1.21703 0.79190 0.99869 0.99615 0.91322 0.93719 0.92549 0.88512 0.90462 0.74765 0.91814 0.89192 0.91362 0.91620 0.87867 0.91032 0.91733 0.89019 0.92588 0.88568 0.87792 0.93116 0.92847 0.94396 0.92707 0.94223 0.91324 0.89618 0.89417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 8.53 71.98 0.61 -1.97 16 2 C -0.13 -2.36 5.31 30.60 0.16 -2.20 16 3 C 0.15 3.53 1.79 44.25 0.08 3.61 16 4 H 0.11 2.81 6.07 -2.39 -0.01 2.79 16 5 N -0.69 -16.79 5.01 -573.72 -2.87 -19.67 16 6 C 0.65 16.50 6.65 129.79 0.86 17.36 16 7 O -0.57 -15.77 9.02 19.80 0.18 -15.59 16 8 O -0.37 -8.54 9.94 -55.47 -0.55 -9.09 16 9 C 0.13 2.25 1.13 -10.79 -0.01 2.24 16 10 C -0.18 -2.93 8.37 71.98 0.60 -2.32 16 11 C -0.14 -1.64 8.85 71.98 0.64 -1.00 16 12 C -0.18 -3.46 8.37 71.98 0.60 -2.86 16 13 C 0.52 14.44 6.92 87.66 0.61 15.05 16 14 O -0.57 -18.55 15.40 -3.04 -0.05 -18.60 16 15 N -0.60 -16.85 2.97 -818.06 -2.43 -19.28 16 16 C 0.10 2.71 5.68 86.51 0.49 3.20 16 17 C -0.13 -4.97 4.86 30.82 0.15 -4.82 16 18 C 0.01 0.60 1.65 -11.51 -0.02 0.58 16 19 C -0.52 -28.76 9.14 25.60 0.23 -28.52 16 20 H 0.03 1.59 7.99 -2.91 -0.02 1.57 16 21 C 0.00 0.24 5.45 84.65 0.46 0.70 16 22 N -0.96 -59.45 13.96 21.45 0.30 -59.15 16 23 Si 0.95 42.02 24.38 68.60 1.67 43.69 16 24 H -0.26 -10.96 6.86 99.48 0.68 -10.27 16 25 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 26 H -0.23 -8.72 6.53 99.48 0.65 -8.07 16 27 C -0.11 -3.97 5.30 30.67 0.16 -3.80 16 28 C 0.12 3.50 6.42 86.36 0.55 4.05 16 29 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.04 0.97 5.63 -2.39 -0.01 0.96 16 31 H 0.06 1.18 7.88 -2.38 -0.02 1.16 16 32 H 0.10 1.54 7.13 -2.39 -0.02 1.53 16 33 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.41 9.89 7.87 -92.71 -0.73 9.16 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.07 1.45 5.88 -2.39 -0.01 1.44 16 38 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.06 1.58 5.88 -2.39 -0.01 1.57 16 42 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 45 H 0.10 2.29 5.07 -2.39 -0.01 2.28 16 46 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.05 2.05 3.24 -2.39 -0.01 2.04 16 48 H 0.04 1.56 7.20 -2.39 -0.02 1.54 16 49 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 50 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 51 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 52 H 0.09 2.56 7.04 -2.39 -0.02 2.55 16 53 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -69.58 394.76 2.54 -67.04 By element: Atomic # 1 Polarization: 31.25 SS G_CDS: 0.10 Total: 31.34 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 6.19 Total: -0.71 kcal Atomic # 7 Polarization: -93.09 SS G_CDS: -5.00 Total: -98.09 kcal Atomic # 8 Polarization: -42.86 SS G_CDS: -0.42 Total: -43.27 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.67 Total: 43.69 kcal Total: -69.58 2.54 -67.04 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495468863.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.818 kcal (2) G-P(sol) polarization free energy of solvation -69.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds