Wall clock time and date at job start Sat Apr 11 2020 06:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47059 * 2 1 4 4 N 1.46497 * 109.47098 * 180.02562 * 3 2 1 5 5 C 1.37100 * 120.00116 * 90.00601 * 4 3 2 6 6 H 1.08000 * 119.99479 * 303.69038 * 5 4 3 7 7 C 1.38945 * 120.00183 * 123.68560 * 5 4 3 8 8 N 1.31410 * 120.00357 * 337.89424 * 7 5 4 9 9 Si 1.86801 * 119.99738 * 157.89304 * 7 5 4 10 10 H 1.48497 * 109.47245 * 60.00227 * 9 7 5 11 11 H 1.48503 * 109.46855 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47226 * 299.99632 * 9 7 5 13 13 C 1.34777 * 120.00352 * 270.00197 * 4 3 2 14 14 O 1.21293 * 119.99973 * 4.10648 * 13 4 3 15 15 C 1.50695 * 120.00244 * 184.10362 * 13 4 3 16 16 H 1.09000 * 109.46981 * 45.69632 * 15 13 4 17 17 C 1.53004 * 109.47246 * 285.69582 * 15 13 4 18 18 C 1.53004 * 109.47046 * 165.69398 * 15 13 4 19 19 C 1.53948 * 113.74141 * 278.73873 * 18 15 13 20 20 N 1.47808 * 86.03631 * 222.08804 * 19 18 15 21 21 C 1.34778 * 134.45515 * 204.64732 * 20 19 18 22 22 O 1.21512 * 120.00311 * 179.86699 * 21 20 19 23 23 O 1.34642 * 120.00080 * 359.86571 * 21 20 19 24 24 C 1.45193 * 117.00227 * 180.02562 * 23 21 20 25 25 C 1.53000 * 109.47267 * 59.99860 * 24 23 21 26 26 C 1.52996 * 109.47378 * 180.02562 * 24 23 21 27 27 C 1.53001 * 109.47139 * 299.99726 * 24 23 21 28 28 C 1.47583 * 91.05272 * 24.55152 * 20 19 18 29 29 H 1.09000 * 109.46916 * 299.99148 * 1 2 3 30 30 H 1.09002 * 109.47441 * 59.99594 * 1 2 3 31 31 H 1.09003 * 109.46892 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.46938 * 240.00576 * 2 1 3 33 33 H 1.09002 * 109.47441 * 120.00406 * 2 1 3 34 34 H 1.09008 * 109.46775 * 60.00476 * 3 2 1 35 35 H 1.09002 * 109.47325 * 300.00477 * 3 2 1 36 36 H 0.97000 * 120.00340 * 177.65133 * 8 7 5 37 37 H 1.08998 * 109.47010 * 183.57337 * 17 15 13 38 38 H 1.09000 * 109.46497 * 303.56727 * 17 15 13 39 39 H 1.08996 * 109.47115 * 63.57169 * 17 15 13 40 40 H 1.08992 * 112.94572 * 50.33518 * 18 15 13 41 41 H 1.08997 * 113.77145 * 336.35304 * 19 18 15 42 42 H 1.08997 * 113.76373 * 107.74724 * 19 18 15 43 43 H 1.09008 * 109.46837 * 60.00086 * 25 24 23 44 44 H 1.08994 * 109.47326 * 180.02562 * 25 24 23 45 45 H 1.09000 * 109.47227 * 300.00402 * 25 24 23 46 46 H 1.08997 * 109.47172 * 59.99594 * 26 24 23 47 47 H 1.08999 * 109.47782 * 180.02562 * 26 24 23 48 48 H 1.09008 * 109.47014 * 300.00090 * 26 24 23 49 49 H 1.09002 * 109.46718 * 60.00582 * 27 24 23 50 50 H 1.09002 * 109.47110 * 179.97438 * 27 24 23 51 51 H 1.08997 * 109.47060 * 300.00191 * 27 24 23 52 52 H 1.09002 * 113.76386 * 221.15178 * 28 20 19 53 53 H 1.08994 * 113.86821 * 89.76988 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1900 1.4428 -1.1882 6 1 4.0103 0.6647 -1.9153 7 6 5.1152 2.4441 -1.4563 8 7 5.0412 3.5937 -0.8240 9 14 6.4645 2.1561 -2.7157 10 1 5.8538 1.8685 -4.0384 11 1 7.3143 3.3697 -2.8169 12 1 7.2976 1.0017 -2.2935 13 6 4.1794 1.4423 1.1663 14 8 3.5758 1.3669 2.2156 15 6 5.6835 1.5357 1.1673 16 1 5.9994 2.3176 0.4767 17 6 6.2780 0.1962 0.7277 18 6 6.1726 1.8726 2.5774 19 6 6.0841 3.3702 2.9228 20 7 7.4144 3.2004 3.5442 21 6 8.0933 3.8468 4.5126 22 8 9.2052 3.4722 4.8288 23 8 7.5395 4.9075 5.1298 24 6 8.3283 5.5552 6.1626 25 6 9.6370 6.0681 5.5584 26 6 7.5399 6.7299 6.7451 27 6 8.6388 4.5495 7.2730 28 6 7.6996 2.0382 2.6805 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6766 1.9564 -0.8899 36 1 5.7071 4.2802 -0.9860 37 1 7.3652 0.2435 0.7892 38 1 5.9113 -0.5958 1.3807 39 1 5.9810 -0.0134 -0.2999 40 1 5.7493 1.2203 3.3411 41 1 6.0869 4.0233 2.0502 42 1 5.2935 3.6110 3.6334 43 1 9.4157 6.7846 4.7673 44 1 10.2293 6.5539 6.3338 45 1 10.1985 5.2310 5.1437 46 1 6.6078 6.3641 7.1755 47 1 8.1321 7.2164 7.5201 48 1 7.3182 7.4465 5.9541 49 1 9.2004 3.7124 6.8584 50 1 9.2313 5.0356 8.0481 51 1 7.7065 4.1841 7.7034 52 1 8.1965 1.2177 3.1982 53 1 8.1783 2.2973 1.7363 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495543849.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:33 Heat of formation + Delta-G solvation = -88.484161 kcal Electronic energy + Delta-G solvation = -31815.703894 eV Core-core repulsion = 27688.904674 eV Total energy + Delta-G solvation = -4126.799220 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.64275 -39.50470 -38.21564 -36.33809 -34.95154 -34.02315 -33.72094 -32.06747 -31.13230 -28.39162 -27.45173 -27.40835 -26.16649 -25.83805 -24.71071 -23.43305 -21.93787 -20.93357 -19.99852 -19.11568 -18.86803 -17.47152 -17.03273 -16.54275 -16.04483 -15.39293 -15.24010 -15.02686 -14.79751 -14.34078 -14.19560 -14.02767 -13.76597 -13.70270 -13.15350 -13.07697 -12.66482 -12.51390 -12.43065 -12.26174 -12.12399 -11.91380 -11.89077 -11.85830 -11.76965 -11.57149 -11.38961 -11.31495 -11.26738 -11.18304 -11.13095 -10.94512 -10.64428 -10.53164 -10.46561 -10.29653 -10.17356 -10.14614 -9.91253 -9.68004 -8.75902 -8.46772 -8.22358 -7.32346 -6.49302 -4.33190 2.22607 3.05979 3.09334 3.15249 3.16701 3.96755 3.97593 4.09429 4.65092 4.69401 4.73227 4.78159 4.87165 4.99545 5.31341 5.39611 5.45277 5.45516 5.47138 5.62090 5.62486 5.66680 5.67221 5.70171 5.81569 5.81962 5.86035 5.92022 5.95969 6.03054 6.10316 6.15689 6.22819 6.25313 6.29568 6.31478 6.38444 6.42441 6.48245 6.56649 6.62432 6.68121 6.72728 6.90802 6.99615 7.04099 7.17067 7.35155 7.95409 7.97170 8.55772 8.56247 8.84966 9.54400 9.97958 10.52198 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013240 B = 0.003182 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.353776 B = 8797.288143 C = 9814.665131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.134 4.134 3 C 0.117 3.883 4 N -0.453 5.453 5 C -0.341 4.341 6 H 0.080 0.920 7 C 0.057 3.943 8 N -0.852 5.852 9 Si 0.893 3.107 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.264 1.264 13 C 0.522 3.478 14 O -0.607 6.607 15 C -0.100 4.100 16 H 0.126 0.874 17 C -0.136 4.136 18 C -0.096 4.096 19 C 0.119 3.881 20 N -0.631 5.631 21 C 0.671 3.329 22 O -0.581 6.581 23 O -0.360 6.360 24 C 0.134 3.866 25 C -0.182 4.182 26 C -0.140 4.140 27 C -0.182 4.182 28 C 0.136 3.864 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.271 0.729 37 H 0.046 0.954 38 H 0.045 0.955 39 H 0.078 0.922 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.087 0.913 46 H 0.066 0.934 47 H 0.078 0.922 48 H 0.066 0.934 49 H 0.087 0.913 50 H 0.067 0.933 51 H 0.059 0.941 52 H 0.081 0.919 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.073 1.640 6.974 8.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.172 4.172 3 C -0.007 4.007 4 N -0.173 5.173 5 C -0.469 4.469 6 H 0.098 0.902 7 C -0.150 4.150 8 N -0.487 5.487 9 Si 0.718 3.282 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.189 1.189 13 C 0.312 3.688 14 O -0.493 6.493 15 C -0.122 4.122 16 H 0.143 0.857 17 C -0.194 4.194 18 C -0.116 4.116 19 C -0.003 4.003 20 N -0.372 5.372 21 C 0.428 3.572 22 O -0.472 6.472 23 O -0.275 6.275 24 C 0.097 3.903 25 C -0.239 4.239 26 C -0.197 4.197 27 C -0.239 4.239 28 C 0.015 3.985 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.096 0.904 40 H 0.122 0.878 41 H 0.113 0.887 42 H 0.099 0.901 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.106 0.894 46 H 0.085 0.915 47 H 0.096 0.904 48 H 0.085 0.915 49 H 0.106 0.894 50 H 0.086 0.914 51 H 0.078 0.922 52 H 0.099 0.901 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.276 1.881 7.768 9.065 hybrid contribution 0.760 0.228 -0.745 1.089 sum 5.036 2.109 7.023 8.896 Atomic orbital electron populations 1.21691 0.96605 1.00681 1.01347 1.21829 0.94631 0.99098 1.01682 1.21379 0.83748 0.94696 1.00863 1.43227 1.02993 1.65929 1.05108 1.19125 1.21419 1.09540 0.96818 0.90233 1.25522 0.99413 0.93413 0.96607 1.70066 1.33261 1.02843 1.42511 0.86558 0.81600 0.78514 0.81555 1.19544 1.20734 1.18871 1.20172 0.88983 0.76460 0.83170 1.90502 1.70863 1.55634 1.32274 1.21390 0.94210 1.01210 0.95394 0.85681 1.21668 0.98963 0.95678 1.03047 1.22968 0.93040 0.96353 0.99225 1.23400 0.82563 0.97485 0.96860 1.48930 1.20201 1.32906 1.35211 1.17557 0.81850 0.78496 0.79328 1.90844 1.19254 1.69164 1.67939 1.86344 1.48361 1.42279 1.50540 1.22014 0.90760 0.92024 0.85495 1.22504 0.96977 1.02899 1.01553 1.21844 1.00654 0.96199 1.01014 1.22511 1.02676 1.00862 0.97897 1.23312 0.97729 0.85275 0.92197 0.93046 0.93081 0.93489 0.92360 0.92344 0.92450 0.91896 0.91875 0.93477 0.93615 0.90350 0.87779 0.88701 0.90056 0.92241 0.91403 0.89416 0.91470 0.90364 0.91485 0.89384 0.91428 0.92221 0.90081 0.89539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 37.16 0.37 -1.76 16 2 C -0.13 -2.41 6.26 -26.73 -0.17 -2.58 16 3 C 0.12 2.46 5.35 -4.04 -0.02 2.44 16 4 N -0.45 -10.50 2.38 -114.81 -0.27 -10.77 16 5 C -0.34 -7.89 7.20 -14.93 -0.11 -8.00 16 6 H 0.08 1.82 7.92 -52.49 -0.42 1.40 16 7 C 0.06 1.30 3.27 -17.47 -0.06 1.24 16 8 N -0.85 -20.43 11.83 55.50 0.66 -19.77 16 9 Si 0.89 17.71 29.52 -169.99 -5.02 12.69 16 10 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 11 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 12 H -0.26 -5.04 7.11 56.52 0.40 -4.63 16 13 C 0.52 12.13 6.50 -10.99 -0.07 12.05 16 14 O -0.61 -15.24 15.49 5.55 0.09 -15.15 16 15 C -0.10 -2.01 1.57 -91.77 -0.14 -2.16 16 16 H 0.13 2.69 4.19 -51.93 -0.22 2.48 16 17 C -0.14 -2.42 8.88 37.16 0.33 -2.09 16 18 C -0.10 -1.74 2.81 -89.69 -0.25 -1.99 16 19 C 0.12 2.17 8.43 -2.84 -0.02 2.15 16 20 N -0.63 -11.20 3.61 -183.98 -0.66 -11.87 16 21 C 0.67 12.19 8.22 54.06 0.44 12.64 16 22 O -0.58 -11.10 12.61 -19.28 -0.24 -11.34 16 23 O -0.36 -6.01 9.87 -40.33 -0.40 -6.41 16 24 C 0.13 1.76 1.13 -90.62 -0.10 1.66 16 25 C -0.18 -2.27 8.37 37.16 0.31 -1.96 16 26 C -0.14 -1.42 8.85 37.16 0.33 -1.09 16 27 C -0.18 -2.26 8.37 37.16 0.31 -1.95 16 28 C 0.14 2.19 7.47 -2.96 -0.02 2.17 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.06 1.27 7.48 -51.92 -0.39 0.88 16 35 H 0.06 1.31 8.04 -51.93 -0.42 0.89 16 36 H 0.27 6.22 8.31 -40.82 -0.34 5.88 16 37 H 0.05 0.72 7.40 -51.93 -0.38 0.33 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 1.48 6.50 -51.93 -0.34 1.15 16 40 H 0.10 1.96 7.73 -51.93 -0.40 1.56 16 41 H 0.09 1.81 7.99 -51.93 -0.41 1.40 16 42 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 43 H 0.06 0.73 8.14 -51.92 -0.42 0.30 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.09 1.31 5.88 -51.93 -0.31 1.00 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 49 H 0.09 1.31 5.88 -51.93 -0.31 1.00 16 50 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 51 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 52 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 53 H 0.09 1.33 8.10 -51.93 -0.42 0.91 16 LS Contribution 416.80 15.07 6.28 6.28 Total: -1.00 -27.58 416.80 -7.94 -35.51 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -9.49 Total: 10.05 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 1.12 Total: 10.78 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: -0.28 Total: -42.41 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -0.56 Total: -32.90 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.02 Total: 12.69 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -27.58 -7.94 -35.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495543849.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.972 kcal (2) G-P(sol) polarization free energy of solvation -27.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds