Wall clock time and date at job start Sat Apr 11 2020 06:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47162 * 2 1 4 4 H 1.08999 * 109.47357 * 53.30651 * 3 2 1 5 5 C 1.52992 * 109.47161 * 173.30877 * 3 2 1 6 6 C 1.52997 * 109.46781 * 293.30593 * 3 2 1 7 7 H 1.09007 * 109.47229 * 53.95140 * 6 3 2 8 8 N 1.46501 * 109.47159 * 293.95527 * 6 3 2 9 9 C 1.34770 * 120.00372 * 84.99822 * 8 6 3 10 10 O 1.21285 * 119.99766 * 359.72666 * 9 8 6 11 11 C 1.50705 * 120.00235 * 179.72396 * 9 8 6 12 12 N 1.46894 * 109.47202 * 180.02562 * 11 9 8 13 13 C 1.46847 * 111.00300 * 294.20995 * 12 11 9 14 14 C 1.53035 * 109.52516 * 174.16041 * 13 12 11 15 15 C 1.53117 * 109.27876 * 59.18361 * 14 13 12 16 16 C 1.50705 * 109.57388 * 182.41143 * 15 14 13 17 17 H 1.07995 * 120.00355 * 119.71518 * 16 15 14 18 18 C 1.37879 * 119.99624 * 299.70895 * 16 15 14 19 19 N 1.31519 * 119.99983 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99800 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46979 * 59.99967 * 20 18 16 22 22 H 1.48504 * 109.47040 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47114 * 299.99840 * 20 18 16 24 24 C 1.53119 * 109.15791 * 302.34387 * 15 14 13 25 25 C 1.46848 * 111.00199 * 169.99938 * 12 11 9 26 26 C 1.50701 * 109.47402 * 173.95161 * 6 3 2 27 27 O 1.20826 * 119.99645 * 99.52182 * 26 6 3 28 28 O 1.34227 * 119.99970 * 279.53341 * 26 6 3 29 29 C 1.45200 * 117.00075 * 185.06574 * 28 26 6 30 30 H 1.09003 * 109.47450 * 173.69869 * 1 2 3 31 31 H 1.08999 * 109.47483 * 293.70493 * 1 2 3 32 32 H 1.09008 * 109.46870 * 53.70307 * 1 2 3 33 33 H 1.08988 * 109.47632 * 239.99193 * 2 1 3 34 34 H 1.09006 * 109.46748 * 119.99574 * 2 1 3 35 35 H 1.08999 * 109.47223 * 179.97438 * 5 3 2 36 36 H 1.09006 * 109.47186 * 299.99823 * 5 3 2 37 37 H 1.09007 * 109.47451 * 59.99695 * 5 3 2 38 38 H 0.97001 * 119.99504 * 264.71950 * 8 6 3 39 39 H 1.09006 * 109.46934 * 299.99954 * 11 9 8 40 40 H 1.08992 * 109.46738 * 59.99806 * 11 9 8 41 41 H 1.08992 * 109.46172 * 294.18101 * 13 12 11 42 42 H 1.09006 * 109.46021 * 54.14402 * 13 12 11 43 43 H 1.09001 * 109.50487 * 299.23924 * 14 13 12 44 44 H 1.09004 * 109.50395 * 179.12087 * 14 13 12 45 45 H 1.08990 * 109.52612 * 62.24805 * 15 14 13 46 46 H 0.97002 * 119.99487 * 180.02562 * 19 18 16 47 47 H 1.09011 * 109.50491 * 297.71414 * 24 15 14 48 48 H 1.08995 * 109.50287 * 177.60229 * 24 15 14 49 49 H 1.08999 * 109.46382 * 305.85765 * 25 12 11 50 50 H 1.09003 * 109.45862 * 65.83494 * 25 12 11 51 51 H 1.08995 * 109.47218 * 179.97438 * 29 28 26 52 52 H 1.09003 * 109.46697 * 299.99318 * 29 28 26 53 53 H 1.09003 * 109.47076 * 59.99473 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5822 1.9898 0.8240 5 6 3.5607 1.4458 0.1681 6 6 1.6719 2.1135 -1.3248 7 1 0.5997 2.0162 -1.4958 8 7 2.4014 1.4674 -2.4187 9 6 1.9061 0.3537 -2.9938 10 8 0.8588 -0.1164 -2.6023 11 6 2.6534 -0.3074 -4.1232 12 7 1.9116 -1.4925 -4.5737 13 6 1.8733 -2.5195 -3.5248 14 6 0.9739 -3.6741 -3.9721 15 6 1.5219 -4.2670 -5.2731 16 6 0.6082 -5.3661 -5.7512 17 1 0.1286 -5.2883 -6.7157 18 6 0.3848 -6.4710 -4.9573 19 7 0.9686 -6.5655 -3.7826 20 14 -0.7470 -7.8336 -5.5502 21 1 -0.2166 -8.4022 -6.8154 22 1 -0.8196 -8.9003 -4.5196 23 1 -2.1050 -7.2812 -5.7866 24 6 1.5970 -3.1661 -6.3346 25 6 2.4783 -2.0262 -5.8189 26 6 2.0411 3.5735 -1.2681 27 8 3.0662 3.9576 -1.7795 28 8 1.2312 4.4470 -0.6495 29 6 1.5913 5.8513 -0.7307 30 1 -0.3634 -1.0215 -0.1128 31 1 -0.3634 0.4131 0.9409 32 1 -0.3633 0.6084 -0.8283 33 1 1.8934 -0.5139 -0.8898 34 1 1.8933 -0.5138 0.8901 35 1 3.9241 2.4734 0.1676 36 1 3.8229 0.9677 1.1119 37 1 4.0185 0.8985 -0.6560 38 1 3.2389 1.8435 -2.7318 39 1 2.7547 0.3940 -4.9515 40 1 3.6428 -0.6070 -3.7779 41 1 2.8814 -2.8930 -3.3452 42 1 1.4778 -2.0859 -2.6062 43 1 -0.0377 -3.3039 -4.1386 44 1 0.9581 -4.4433 -3.1999 45 1 2.5183 -4.6723 -5.0974 46 1 0.8117 -7.3431 -3.2242 47 1 0.5951 -2.7879 -6.5383 48 1 2.0263 -3.5723 -7.2504 49 1 2.5223 -1.2343 -6.5666 50 1 3.4836 -2.4022 -5.6285 51 1 0.8554 6.4469 -0.1906 52 1 2.5758 6.0002 -0.2874 53 1 1.6127 6.1611 -1.7756 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541951320.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:20 Heat of formation + Delta-G solvation = -142.979156 kcal Electronic energy + Delta-G solvation = -31776.952088 eV Core-core repulsion = 27647.789787 eV Total energy + Delta-G solvation = -4129.162300 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.17215 -40.93542 -39.44792 -37.90972 -37.30053 -35.60360 -34.69484 -33.23392 -31.40053 -31.31343 -30.03303 -28.97485 -27.62368 -26.23666 -24.65723 -23.73582 -23.30230 -22.46037 -21.72284 -20.64289 -20.33137 -19.05192 -18.41592 -18.32954 -17.74459 -17.54877 -16.95720 -16.66267 -16.40199 -16.01221 -15.81109 -15.28948 -15.14109 -14.98490 -14.59009 -14.52781 -14.43064 -14.16068 -14.08705 -13.94270 -13.82165 -13.64448 -13.06385 -12.95271 -12.92176 -12.80935 -12.78984 -12.54193 -12.37435 -12.29521 -11.99340 -11.97964 -11.87040 -11.84176 -11.80195 -11.63170 -11.32554 -11.30741 -10.92993 -10.77921 -10.46028 -10.31851 -10.09391 -9.13278 -8.05742 -6.18884 0.91621 1.34926 1.41038 1.43274 1.50389 1.69817 2.20847 2.45034 3.12724 3.21070 3.51745 3.64091 3.82165 3.87353 4.02947 4.19575 4.27990 4.32471 4.32839 4.33475 4.37855 4.44810 4.48716 4.56211 4.57411 4.65051 4.70916 4.73656 4.79551 4.81930 4.94045 4.97056 5.02954 5.05322 5.13727 5.20583 5.23055 5.26102 5.27393 5.36433 5.37131 5.48668 5.56248 5.62224 5.65367 6.01591 6.04397 6.22136 6.33425 6.43759 6.50756 6.56502 6.92951 7.30559 7.48358 8.98610 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020363 B = 0.002548 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.679264 B =10985.892096 C =11631.328298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 C -0.089 4.089 4 H 0.100 0.900 5 C -0.146 4.146 6 C 0.159 3.841 7 H 0.118 0.882 8 N -0.710 5.710 9 C 0.518 3.482 10 O -0.528 6.528 11 C 0.037 3.963 12 N -0.531 5.531 13 C 0.072 3.928 14 C -0.089 4.089 15 C 0.044 3.956 16 C -0.533 4.533 17 H 0.051 0.949 18 C 0.010 3.990 19 N -0.918 5.918 20 Si 0.952 3.048 21 H -0.269 1.269 22 H -0.284 1.284 23 H -0.274 1.274 24 C -0.100 4.100 25 C 0.068 3.932 26 C 0.471 3.529 27 O -0.517 6.517 28 O -0.359 6.359 29 C 0.027 3.973 30 H 0.031 0.969 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.416 0.584 39 H 0.130 0.870 40 H 0.077 0.923 41 H 0.011 0.989 42 H 0.075 0.925 43 H 0.021 0.979 44 H 0.055 0.945 45 H -0.010 1.010 46 H 0.259 0.741 47 H 0.047 0.953 48 H 0.057 0.943 49 H 0.096 0.904 50 H 0.030 0.970 51 H 0.132 0.868 52 H 0.067 0.933 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.600 25.431 8.335 27.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.150 4.150 3 C -0.108 4.108 4 H 0.118 0.882 5 C -0.203 4.203 6 C 0.052 3.948 7 H 0.136 0.864 8 N -0.368 5.368 9 C 0.305 3.695 10 O -0.403 6.403 11 C -0.094 4.094 12 N -0.256 5.256 13 C -0.055 4.055 14 C -0.127 4.127 15 C 0.025 3.975 16 C -0.571 4.571 17 H 0.069 0.931 18 C -0.188 4.188 19 N -0.558 5.558 20 Si 0.778 3.222 21 H -0.195 1.195 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.138 4.138 25 C -0.059 4.059 26 C 0.314 3.686 27 O -0.406 6.406 28 O -0.274 6.274 29 C -0.065 4.065 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.254 0.746 39 H 0.148 0.852 40 H 0.095 0.905 41 H 0.029 0.971 42 H 0.093 0.907 43 H 0.039 0.961 44 H 0.074 0.926 45 H 0.008 0.992 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.076 0.924 49 H 0.114 0.886 50 H 0.048 0.952 51 H 0.150 0.850 52 H 0.086 0.914 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.683 25.272 8.526 27.080 hybrid contribution 0.619 -1.080 -0.199 1.261 sum 5.302 24.192 8.327 26.128 Atomic orbital electron populations 1.21652 0.95631 1.00950 1.01161 1.21566 0.96425 0.95115 1.01885 1.21515 0.97704 0.96884 0.94715 0.88156 1.21821 0.93857 1.01860 1.02759 1.20490 0.99818 0.84561 0.89891 0.86443 1.45673 1.27016 1.28043 1.36049 1.20749 0.85753 0.79966 0.83027 1.90753 1.23755 1.63066 1.62740 1.22027 0.95549 0.94222 0.97604 1.61598 1.53230 1.06229 1.04544 1.22067 0.96952 0.91889 0.94604 1.21328 0.96503 0.94848 1.00031 1.18674 0.94136 0.92235 0.92447 1.21580 1.28205 1.04338 1.03018 0.93118 1.25760 0.97435 1.00476 0.95128 1.70024 1.44776 1.29885 1.11076 0.85704 0.79533 0.78884 0.78082 1.19455 1.20965 1.19927 1.21541 0.98990 0.95133 0.98159 1.22093 0.95379 0.97316 0.91150 1.23610 0.81362 0.89473 0.74190 1.90651 1.25706 1.80293 1.43948 1.86500 1.52090 1.20266 1.68531 1.23629 1.03521 0.75709 1.03677 0.94989 0.92095 0.92617 0.92753 0.91682 0.92731 0.91167 0.92517 0.74638 0.85229 0.90547 0.97123 0.90660 0.96059 0.92602 0.99191 0.93180 0.93434 0.92391 0.88561 0.95225 0.85015 0.91424 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.80 71.98 0.63 -2.74 16 2 C -0.11 -2.56 4.86 30.59 0.15 -2.42 16 3 C -0.09 -1.56 2.17 -10.80 -0.02 -1.59 16 4 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 5 C -0.15 -2.35 8.79 71.98 0.63 -1.72 16 6 C 0.16 3.01 2.38 44.24 0.11 3.12 16 7 H 0.12 2.50 5.78 -2.38 -0.01 2.49 16 8 N -0.71 -13.77 3.98 -446.09 -1.78 -15.54 16 9 C 0.52 13.19 6.13 87.66 0.54 13.73 16 10 O -0.53 -17.36 9.63 -3.05 -0.03 -17.39 16 11 C 0.04 0.89 5.45 85.56 0.47 1.36 16 12 N -0.53 -18.31 4.40 -900.95 -3.96 -22.27 16 13 C 0.07 3.00 5.11 86.32 0.44 3.44 16 14 C -0.09 -4.55 5.12 30.64 0.16 -4.39 16 15 C 0.04 2.28 2.16 -11.46 -0.02 2.25 16 16 C -0.53 -30.67 8.57 25.60 0.22 -30.46 16 17 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 18 C 0.01 0.59 5.31 84.65 0.45 1.04 16 19 N -0.92 -55.04 11.37 21.45 0.24 -54.79 16 20 Si 0.95 45.25 29.54 68.60 2.03 47.27 16 21 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 23 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 24 C -0.10 -4.24 5.32 30.65 0.16 -4.07 16 25 C 0.07 2.25 5.46 86.32 0.47 2.73 16 26 C 0.47 8.57 6.32 71.24 0.45 9.02 16 27 O -0.52 -10.80 15.37 21.96 0.34 -10.47 16 28 O -0.36 -5.67 10.57 -51.38 -0.54 -6.21 16 29 C 0.03 0.27 10.58 113.37 1.20 1.47 16 30 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.05 1.47 5.15 -2.38 -0.01 1.46 16 33 H 0.05 1.52 4.88 -2.39 -0.01 1.50 16 34 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.05 0.86 7.19 -2.39 -0.02 0.85 16 36 H 0.07 1.02 8.14 -2.38 -0.02 1.01 16 37 H 0.06 0.98 7.45 -2.38 -0.02 0.96 16 38 H 0.42 6.73 7.74 -92.71 -0.72 6.02 16 39 H 0.13 2.36 7.99 -2.38 -0.02 2.34 16 40 H 0.08 1.63 8.12 -2.39 -0.02 1.61 16 41 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.08 3.13 5.65 -2.38 -0.01 3.12 16 43 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.06 3.22 6.17 -2.38 -0.01 3.21 16 45 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 46 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 47 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 48 H 0.06 2.31 8.14 -2.39 -0.02 2.30 16 49 H 0.10 2.52 8.01 -2.39 -0.02 2.50 16 50 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 52 H 0.07 0.63 8.10 -2.39 -0.02 0.61 16 53 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -70.48 402.83 2.50 -67.97 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 0.18 Total: 20.67 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 6.03 Total: -9.24 kcal Atomic # 7 Polarization: -87.11 SS G_CDS: -5.49 Total: -92.61 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -0.23 Total: -34.06 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -70.48 2.50 -67.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541951320.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.006 kcal (2) G-P(sol) polarization free energy of solvation -70.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds