Wall clock time and date at job start Sat Apr 11 2020 06:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47275 * 2 1 4 4 H 1.09000 * 109.47019 * 305.00637 * 3 2 1 5 5 C 1.52999 * 109.47159 * 65.00452 * 3 2 1 6 6 C 1.52999 * 109.47270 * 185.00214 * 3 2 1 7 7 H 1.09004 * 109.46958 * 184.99762 * 6 3 2 8 8 N 1.46497 * 109.47357 * 305.00452 * 6 3 2 9 9 C 1.34780 * 119.99566 * 275.00168 * 8 6 3 10 10 O 1.21280 * 120.00423 * 359.97438 * 9 8 6 11 11 C 1.50701 * 119.99795 * 180.02562 * 9 8 6 12 12 N 1.46901 * 109.46921 * 179.97438 * 11 9 8 13 13 C 1.46839 * 111.00222 * 294.20814 * 12 11 9 14 14 C 1.53034 * 109.52552 * 174.16216 * 13 12 11 15 15 C 1.53123 * 109.28182 * 59.17780 * 14 13 12 16 16 C 1.50696 * 109.57716 * 182.41084 * 15 14 13 17 17 H 1.07997 * 119.99878 * 119.72167 * 16 15 14 18 18 C 1.37871 * 120.00268 * 299.71257 * 16 15 14 19 19 N 1.31519 * 119.99776 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00297 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47155 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47555 * 120.00183 * 20 18 16 23 23 H 1.48508 * 109.47373 * 240.00252 * 20 18 16 24 24 C 1.53120 * 109.16070 * 302.35293 * 15 14 13 25 25 C 1.46849 * 110.99649 * 169.99608 * 12 11 9 26 26 C 1.50705 * 109.46944 * 65.00389 * 6 3 2 27 27 O 1.20823 * 119.99666 * 240.00110 * 26 6 3 28 28 O 1.34222 * 120.00177 * 59.99766 * 26 6 3 29 29 C 1.45203 * 116.99935 * 179.97438 * 28 26 6 30 30 H 1.09000 * 109.47568 * 59.99696 * 1 2 3 31 31 H 1.09002 * 109.47115 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46870 * 299.99555 * 1 2 3 33 33 H 1.09001 * 109.46870 * 240.00445 * 2 1 3 34 34 H 1.09000 * 109.47568 * 120.00304 * 2 1 3 35 35 H 1.09005 * 109.47210 * 300.00256 * 5 3 2 36 36 H 1.08998 * 109.47399 * 59.99514 * 5 3 2 37 37 H 1.08994 * 109.47552 * 180.02562 * 5 3 2 38 38 H 0.96995 * 120.00423 * 94.99474 * 8 6 3 39 39 H 1.09002 * 109.47060 * 299.99722 * 11 9 8 40 40 H 1.09001 * 109.47380 * 59.99809 * 11 9 8 41 41 H 1.09006 * 109.46266 * 294.17473 * 13 12 11 42 42 H 1.09002 * 109.46276 * 54.14664 * 13 12 11 43 43 H 1.09006 * 109.50444 * 299.24199 * 14 13 12 44 44 H 1.09003 * 109.50687 * 179.12283 * 14 13 12 45 45 H 1.09005 * 109.51783 * 62.25186 * 15 14 13 46 46 H 0.97006 * 120.00096 * 179.97438 * 19 18 16 47 47 H 1.09005 * 109.50142 * 297.71204 * 24 15 14 48 48 H 1.08993 * 109.53791 * 177.61458 * 24 15 14 49 49 H 1.08991 * 109.46839 * 305.85721 * 25 12 11 50 50 H 1.09005 * 109.46224 * 65.84006 * 25 12 11 51 51 H 1.09000 * 109.46743 * 60.00573 * 29 28 26 52 52 H 1.09001 * 109.47152 * 179.97438 * 29 28 26 53 53 H 1.08991 * 109.47212 * 300.00163 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 1.6353 2.1265 1.3074 6 6 3.5648 1.4443 -0.1258 7 1 3.9355 2.4655 -0.0367 8 7 4.1436 0.6200 0.9381 9 6 4.3724 1.1532 2.1546 10 8 4.0996 2.3155 2.3684 11 6 4.9683 0.3055 3.2488 12 7 5.1178 1.1127 4.4670 13 6 6.1036 2.1833 4.2713 14 6 6.1270 3.0888 5.5048 15 6 6.4892 2.2551 6.7371 16 6 6.4564 3.1283 7.9649 17 1 5.7802 2.8965 8.7745 18 6 7.2897 4.2230 8.0548 19 7 8.1129 4.5055 7.0687 20 14 7.2495 5.3050 9.5769 21 1 6.2449 4.7759 10.5339 22 1 8.5892 5.3080 10.2177 23 1 6.8830 6.6910 9.1896 24 6 5.4751 1.1182 6.8905 25 6 5.4705 0.2699 5.6167 26 6 3.9588 0.8822 -1.4674 27 8 4.6519 -0.1056 -1.5285 28 8 3.5397 1.4788 -2.5943 29 6 3.9582 0.8829 -3.8506 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8932 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 0.5490 2.1252 1.3971 36 1 2.0699 1.5874 2.1492 37 1 1.9983 3.1542 1.3073 38 1 4.3620 -0.3094 0.7670 39 1 4.3116 -0.5405 3.4514 40 1 5.9455 -0.0604 2.9336 41 1 7.0908 1.7455 4.1234 42 1 5.8320 2.7712 3.3944 43 1 5.1438 3.5378 5.6455 44 1 6.8699 3.8743 5.3657 45 1 7.4885 1.8377 6.6136 46 1 8.6989 5.2760 7.1317 47 1 4.4815 1.5362 7.0528 48 1 5.7514 0.4956 7.7414 49 1 4.7392 -0.5320 5.7171 50 1 6.4607 -0.1588 5.4626 51 1 3.5900 -0.1415 -3.9072 52 1 3.5516 1.4610 -4.6803 53 1 5.0467 0.8814 -3.9073 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541951321.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:23 Heat of formation + Delta-G solvation = -147.103309 kcal Electronic energy + Delta-G solvation = -31366.320693 eV Core-core repulsion = 27236.979556 eV Total energy + Delta-G solvation = -4129.341137 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.14573 -40.91937 -39.44214 -37.90747 -37.46334 -35.62787 -34.74676 -33.28247 -31.44587 -31.33490 -29.68050 -29.00029 -27.67707 -26.33416 -24.81679 -23.75071 -23.32261 -22.41303 -21.77579 -20.56757 -20.33130 -18.97321 -18.42476 -18.31842 -17.79121 -17.49484 -16.91500 -16.60362 -16.54404 -16.12711 -15.65361 -15.51799 -15.26367 -14.97283 -14.82341 -14.59160 -14.40979 -14.11574 -14.03421 -13.86098 -13.71767 -13.49368 -13.06461 -12.95761 -12.93779 -12.84902 -12.81266 -12.58959 -12.42372 -12.31970 -12.14151 -11.99692 -11.87696 -11.84105 -11.79010 -11.55328 -11.38680 -11.33535 -10.95845 -10.78506 -10.50154 -10.35606 -10.10395 -9.15320 -8.06539 -6.19734 0.94635 1.28999 1.39750 1.41498 1.53126 1.68607 2.18366 2.44597 3.10582 3.20419 3.47758 3.61528 3.81017 3.84738 4.06576 4.18447 4.26974 4.30433 4.31957 4.32334 4.37485 4.42968 4.52644 4.55322 4.57218 4.64048 4.67341 4.71392 4.78224 4.81045 4.94741 5.01058 5.04398 5.11000 5.13851 5.14631 5.18319 5.23812 5.25731 5.32664 5.36405 5.47274 5.55093 5.61081 5.64197 6.00372 6.02946 6.20019 6.31857 6.42904 6.47836 6.55383 6.92722 7.27240 7.47815 8.98270 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018500 B = 0.002376 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.182367 B =11783.228589 C =12107.960034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.088 4.088 4 H 0.102 0.898 5 C -0.134 4.134 6 C 0.159 3.841 7 H 0.115 0.885 8 N -0.709 5.709 9 C 0.521 3.479 10 O -0.539 6.539 11 C 0.036 3.964 12 N -0.530 5.530 13 C 0.071 3.929 14 C -0.089 4.089 15 C 0.043 3.957 16 C -0.530 4.530 17 H 0.052 0.948 18 C 0.008 3.992 19 N -0.919 5.919 20 Si 0.954 3.046 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.282 1.282 24 C -0.100 4.100 25 C 0.068 3.932 26 C 0.470 3.530 27 O -0.522 6.522 28 O -0.355 6.355 29 C 0.028 3.972 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.046 0.954 37 H 0.045 0.955 38 H 0.416 0.584 39 H 0.135 0.865 40 H 0.075 0.925 41 H 0.011 0.989 42 H 0.070 0.930 43 H 0.022 0.978 44 H 0.055 0.945 45 H -0.010 1.010 46 H 0.259 0.741 47 H 0.048 0.952 48 H 0.059 0.941 49 H 0.099 0.901 50 H 0.029 0.971 51 H 0.068 0.932 52 H 0.133 0.867 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.472 -12.510 -22.576 29.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.107 4.107 4 H 0.120 0.880 5 C -0.191 4.191 6 C 0.053 3.947 7 H 0.132 0.868 8 N -0.366 5.366 9 C 0.308 3.692 10 O -0.415 6.415 11 C -0.094 4.094 12 N -0.255 5.255 13 C -0.057 4.057 14 C -0.127 4.127 15 C 0.024 3.976 16 C -0.568 4.568 17 H 0.070 0.930 18 C -0.190 4.190 19 N -0.559 5.559 20 Si 0.780 3.220 21 H -0.190 1.190 22 H -0.205 1.205 23 H -0.208 1.208 24 C -0.138 4.138 25 C -0.060 4.060 26 C 0.313 3.687 27 O -0.411 6.411 28 O -0.270 6.270 29 C -0.065 4.065 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.254 0.746 39 H 0.152 0.848 40 H 0.093 0.907 41 H 0.029 0.971 42 H 0.088 0.912 43 H 0.041 0.959 44 H 0.073 0.927 45 H 0.008 0.992 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.077 0.923 49 H 0.117 0.883 50 H 0.047 0.953 51 H 0.087 0.913 52 H 0.151 0.849 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.770 -11.629 -22.426 28.771 hybrid contribution 1.549 0.129 0.430 1.613 sum -12.221 -11.500 -21.996 27.666 Atomic orbital electron populations 1.21775 0.94382 1.02193 1.02318 1.21542 0.97308 0.94719 1.01775 1.21559 0.90368 0.98342 1.00439 0.87987 1.21813 1.01150 1.00062 0.96071 1.20478 0.96226 0.96686 0.81351 0.86770 1.45629 1.65467 1.15642 1.09853 1.20753 0.77367 0.88089 0.82967 1.90739 1.50831 1.18516 1.81380 1.22042 1.02086 0.96156 0.89137 1.61601 1.48523 1.12063 1.03291 1.22065 0.91084 0.93372 0.99170 1.21336 0.98685 0.98381 0.94341 1.18688 0.92791 0.92779 0.93322 1.21633 1.20740 1.11149 1.03325 0.92995 1.25781 0.95137 0.98969 0.99069 1.70044 1.24431 1.28458 1.32988 0.85570 0.77924 0.78585 0.79965 1.19047 1.20530 1.20850 1.21539 0.99239 0.96908 0.96096 1.22109 0.99251 0.94836 0.89769 1.23616 0.76268 0.81465 0.87328 1.90662 1.36255 1.26239 1.87973 1.86492 1.69435 1.55393 1.15669 1.23626 1.01256 1.00196 0.81453 0.92020 0.92079 0.92487 0.92592 0.91707 0.91482 0.93528 0.93617 0.74610 0.84772 0.90741 0.97100 0.91165 0.95886 0.92658 0.99214 0.93212 0.93316 0.92276 0.88306 0.95286 0.91303 0.84876 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.67 71.98 0.70 -1.12 16 2 C -0.12 -1.64 4.99 30.59 0.15 -1.49 16 3 C -0.09 -1.45 2.18 -10.79 -0.02 -1.47 16 4 H 0.10 1.45 7.99 -2.39 -0.02 1.44 16 5 C -0.13 -2.84 7.55 71.98 0.54 -2.30 16 6 C 0.16 3.08 2.47 44.25 0.11 3.19 16 7 H 0.11 2.55 7.58 -2.38 -0.02 2.54 16 8 N -0.71 -14.16 4.03 -446.09 -1.80 -15.96 16 9 C 0.52 13.75 6.07 87.66 0.53 14.28 16 10 O -0.54 -18.66 11.47 -3.03 -0.03 -18.69 16 11 C 0.04 0.91 5.45 85.56 0.47 1.37 16 12 N -0.53 -18.53 4.40 -900.93 -3.96 -22.49 16 13 C 0.07 3.01 5.10 86.33 0.44 3.45 16 14 C -0.09 -4.62 5.12 30.65 0.16 -4.46 16 15 C 0.04 2.24 2.16 -11.46 -0.02 2.22 16 16 C -0.53 -30.57 8.56 25.60 0.22 -30.35 16 17 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 18 C 0.01 0.49 5.31 84.65 0.45 0.94 16 19 N -0.92 -55.46 11.37 21.45 0.24 -55.22 16 20 Si 0.95 45.41 29.54 68.60 2.03 47.44 16 21 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 23 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 24 C -0.10 -4.22 5.32 30.65 0.16 -4.05 16 25 C 0.07 2.25 5.46 86.33 0.47 2.72 16 26 C 0.47 8.84 6.22 71.24 0.44 9.29 16 27 O -0.52 -11.64 15.59 21.97 0.34 -11.29 16 28 O -0.35 -5.60 10.37 -51.34 -0.53 -6.14 16 29 C 0.03 0.27 10.56 113.37 1.20 1.47 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.75 6.57 -2.39 -0.02 0.74 16 33 H 0.06 0.79 7.23 -2.39 -0.02 0.77 16 34 H 0.06 0.98 7.65 -2.39 -0.02 0.96 16 35 H 0.07 1.22 6.57 -2.38 -0.02 1.21 16 36 H 0.05 1.19 5.65 -2.39 -0.01 1.17 16 37 H 0.04 1.14 7.85 -2.39 -0.02 1.12 16 38 H 0.42 6.89 7.79 -92.71 -0.72 6.17 16 39 H 0.13 2.39 7.99 -2.39 -0.02 2.37 16 40 H 0.07 1.67 8.12 -2.39 -0.02 1.65 16 41 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 42 H 0.07 3.04 5.78 -2.39 -0.01 3.03 16 43 H 0.02 1.24 8.14 -2.38 -0.02 1.22 16 44 H 0.05 3.23 6.17 -2.39 -0.01 3.21 16 45 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 46 H 0.26 14.82 8.31 -92.70 -0.77 14.05 16 47 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 48 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 49 H 0.10 2.55 8.01 -2.39 -0.02 2.53 16 50 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 51 H 0.07 0.64 8.13 -2.39 -0.02 0.62 16 52 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 53 H 0.06 0.67 8.13 -2.39 -0.02 0.65 16 Total: -1.00 -72.11 406.83 2.45 -69.66 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.17 Total: 19.03 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: 5.99 Total: -6.32 kcal Atomic # 7 Polarization: -88.16 SS G_CDS: -5.51 Total: -93.68 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -0.22 Total: -36.12 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -72.11 2.45 -69.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541951321.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.445 kcal (2) G-P(sol) polarization free energy of solvation -72.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds