Wall clock time and date at job start Sat Apr 11 2020 06:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45204 * 109.46963 * 2 1 4 4 C 1.34227 * 117.00141 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99860 * 0.02562 * 4 3 2 6 6 C 1.50700 * 119.99998 * 180.02562 * 4 3 2 7 7 C 1.53035 * 109.45751 * 180.02562 * 6 4 3 8 8 C 1.53199 * 109.31196 * 178.61406 * 7 6 4 9 9 N 1.46922 * 108.77635 * 54.62875 * 8 7 6 10 10 C 1.34776 * 120.62919 * 126.36888 * 9 8 7 11 11 O 1.21278 * 119.99921 * 4.75636 * 10 9 8 12 12 C 1.50705 * 120.00199 * 184.75287 * 10 9 8 13 13 H 1.09000 * 109.46943 * 322.87825 * 12 10 9 14 14 C 1.53001 * 109.46788 * 82.87167 * 12 10 9 15 15 N 1.46893 * 109.47311 * 202.87176 * 12 10 9 16 16 C 1.46899 * 111.00003 * 154.00068 * 15 12 10 17 17 H 1.08999 * 109.47251 * 332.92863 * 16 15 12 18 18 C 1.50699 * 109.46916 * 92.92513 * 16 15 12 19 19 H 1.08005 * 120.00168 * 0.02562 * 18 16 15 20 20 C 1.37878 * 119.99790 * 180.02562 * 18 16 15 21 21 N 1.31514 * 120.00619 * 359.72445 * 20 18 16 22 22 Si 1.86809 * 119.99632 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47036 * 90.00082 * 22 20 18 24 24 H 1.48504 * 109.46839 * 209.99684 * 22 20 18 25 25 H 1.48493 * 109.47156 * 329.99833 * 22 20 18 26 26 C 1.52998 * 109.47358 * 212.92525 * 16 15 12 27 27 C 1.52999 * 109.47274 * 65.31193 * 26 16 15 28 28 C 1.46929 * 118.74199 * 306.64666 * 9 8 7 29 29 C 1.52762 * 109.00449 * 53.30747 * 28 9 8 30 30 H 1.09005 * 109.47204 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47459 * 299.99383 * 1 2 3 32 32 H 1.09007 * 109.47325 * 59.99968 * 1 2 3 33 33 H 1.09004 * 109.46983 * 240.00731 * 2 1 3 34 34 H 1.08998 * 109.47038 * 120.00089 * 2 1 3 35 35 H 1.09004 * 109.45599 * 299.97355 * 6 4 3 36 36 H 1.08999 * 109.50425 * 58.65896 * 7 6 4 37 37 H 1.08997 * 109.52486 * 298.57181 * 7 6 4 38 38 H 1.09003 * 109.58221 * 294.84498 * 8 7 6 39 39 H 1.08998 * 109.70152 * 174.49021 * 8 7 6 40 40 H 1.09000 * 109.46635 * 179.28353 * 14 12 10 41 41 H 1.08999 * 109.47380 * 299.28038 * 14 12 10 42 42 H 1.09000 * 109.47056 * 59.28570 * 14 12 10 43 43 H 1.00902 * 110.99794 * 30.05032 * 15 12 10 44 44 H 0.96997 * 120.00439 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.47064 * 185.30945 * 26 16 15 46 46 H 1.09000 * 109.47135 * 305.30649 * 26 16 15 47 47 H 1.09000 * 109.46571 * 303.82979 * 27 26 16 48 48 H 1.09000 * 109.47074 * 63.82333 * 27 26 16 49 49 H 1.09000 * 109.47293 * 183.82870 * 27 26 16 50 50 H 1.08999 * 109.58897 * 173.14119 * 28 9 8 51 51 H 1.08999 * 109.58505 * 293.57062 * 28 9 8 52 52 H 1.09004 * 109.56482 * 185.55610 * 29 28 9 53 53 H 1.08997 * 109.36519 * 65.50515 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9206 2.9375 0.0012 7 6 5.4488 2.8572 0.0010 8 6 6.0307 4.2739 -0.0333 9 7 5.4669 5.0439 1.0838 10 6 6.2741 5.6766 1.9582 11 8 7.4735 5.6860 1.7788 12 6 5.6864 6.3725 3.1588 13 1 4.7401 6.8375 2.8821 14 6 5.4464 5.3518 4.2730 15 7 6.6190 7.4040 3.6322 16 6 5.9047 8.4740 4.3414 17 1 4.8828 8.5382 3.9678 18 6 5.8819 8.1700 5.8172 19 1 6.3514 7.2721 6.1910 20 6 5.2616 9.0384 6.6903 21 7 4.6946 10.1345 6.2359 22 14 5.2339 8.6619 8.5199 23 1 6.4299 9.2593 9.1663 24 1 4.0054 9.2365 9.1249 25 1 5.2443 7.1910 8.7228 26 6 6.6185 9.8066 4.1061 27 6 6.5263 10.1802 2.6253 28 6 4.0066 5.1060 1.2332 29 6 3.4474 3.6845 1.2502 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5138 0.8900 35 1 3.5852 3.4696 -0.8891 36 1 5.7842 2.3048 -0.8768 37 1 5.7869 2.3470 0.9030 38 1 5.7691 4.7536 -0.9765 39 1 7.1153 4.2282 0.0649 40 1 5.0332 5.8572 5.1458 41 1 4.7445 4.5934 3.9261 42 1 6.3906 4.8776 4.5409 43 1 7.1634 7.7769 2.8689 44 1 4.2585 10.7456 6.8502 45 1 6.1452 10.5833 4.7069 46 1 7.6660 9.7133 4.3928 47 1 6.9384 9.3724 2.0206 48 1 5.4824 10.3399 2.3553 49 1 7.0922 11.0941 2.4452 50 1 3.7559 5.6070 2.1682 51 1 3.5766 5.6549 0.3954 52 1 2.3580 3.7209 1.2614 53 1 3.8037 3.1666 2.1406 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579855006.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:56 Heat of formation + Delta-G solvation = -130.283006 kcal Electronic energy + Delta-G solvation = -31138.169591 eV Core-core repulsion = 27009.557837 eV Total energy + Delta-G solvation = -4128.611754 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.09200 -40.04811 -37.74970 -36.79701 -36.18258 -33.53011 -32.93509 -32.00790 -31.63524 -31.15627 -28.52642 -26.83667 -26.45791 -24.24376 -23.49287 -23.05451 -22.56314 -21.66615 -20.44485 -19.57598 -18.74927 -18.03708 -17.21277 -16.91050 -16.43331 -16.23816 -15.99753 -15.21244 -14.92047 -14.66363 -14.51132 -14.40804 -14.00906 -13.77543 -13.63016 -13.49588 -13.12018 -12.90352 -12.73569 -12.49600 -12.40358 -12.31516 -12.21516 -12.10255 -11.92260 -11.64115 -11.48251 -11.22623 -11.19706 -11.10375 -11.03168 -10.95325 -10.88589 -10.83870 -10.60177 -10.58248 -9.91868 -9.84042 -9.64535 -9.13925 -9.08519 -8.67780 -8.32479 -7.26240 -5.96271 -3.99394 1.88719 2.29499 2.87622 3.01569 3.33309 3.40125 3.43823 4.16244 4.33408 4.36635 4.45128 4.52409 4.57606 4.70595 4.78206 4.85757 4.90119 5.02945 5.15856 5.17222 5.26458 5.33300 5.35459 5.36142 5.38884 5.52522 5.55617 5.57493 5.74041 5.76581 5.79853 5.89197 5.96655 6.12918 6.16944 6.18015 6.23702 6.41193 6.49070 6.56406 6.83881 6.96296 7.04186 7.16227 7.36978 7.43639 7.49478 7.78582 7.94223 8.25515 8.37177 8.46610 8.74244 9.08638 9.65154 11.09031 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013635 B = 0.002611 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.072807 B =10720.773176 C =11879.739893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.357 6.357 4 C 0.467 3.533 5 O -0.507 6.507 6 C -0.078 4.078 7 C -0.118 4.118 8 C 0.113 3.887 9 N -0.620 5.620 10 C 0.515 3.485 11 O -0.528 6.528 12 C 0.082 3.918 13 H 0.056 0.944 14 C -0.132 4.132 15 N -0.667 5.667 16 C 0.219 3.781 17 H 0.006 0.994 18 C -0.488 4.488 19 H 0.065 0.935 20 C 0.054 3.946 21 N -0.897 5.897 22 Si 0.893 3.107 23 H -0.282 1.282 24 H -0.289 1.289 25 H -0.274 1.274 26 C -0.130 4.130 27 C -0.151 4.151 28 C 0.105 3.895 29 C -0.127 4.127 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.040 0.960 42 H 0.058 0.942 43 H 0.329 0.671 44 H 0.259 0.741 45 H 0.102 0.898 46 H 0.042 0.958 47 H 0.034 0.966 48 H 0.042 0.958 49 H 0.038 0.962 50 H 0.102 0.898 51 H 0.073 0.927 52 H 0.091 0.909 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.920 -15.236 -15.441 23.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.274 6.274 4 C 0.310 3.690 5 O -0.394 6.394 6 C -0.097 4.097 7 C -0.156 4.156 8 C -0.010 4.010 9 N -0.356 5.356 10 C 0.303 3.697 11 O -0.403 6.403 12 C -0.032 4.032 13 H 0.073 0.927 14 C -0.190 4.190 15 N -0.301 5.301 16 C 0.112 3.888 17 H 0.024 0.976 18 C -0.527 4.527 19 H 0.083 0.917 20 C -0.146 4.146 21 N -0.538 5.538 22 Si 0.722 3.278 23 H -0.208 1.208 24 H -0.215 1.215 25 H -0.199 1.199 26 C -0.169 4.169 27 C -0.208 4.208 28 C -0.018 4.018 29 C -0.166 4.166 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.129 0.871 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.116 0.884 40 H 0.108 0.892 41 H 0.059 0.941 42 H 0.077 0.923 43 H 0.149 0.851 44 H 0.069 0.931 45 H 0.120 0.880 46 H 0.061 0.939 47 H 0.053 0.947 48 H 0.061 0.939 49 H 0.057 0.943 50 H 0.120 0.880 51 H 0.091 0.909 52 H 0.110 0.890 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.992 -15.715 -14.884 23.074 hybrid contribution -0.604 0.060 0.163 0.629 sum -8.596 -15.655 -14.721 23.145 Atomic orbital electron populations 1.21812 0.92481 1.03029 1.03676 1.23041 0.95483 0.80190 1.02590 1.86512 1.24561 1.32409 1.83893 1.23795 0.80525 0.92682 0.72021 1.90674 1.60458 1.43171 1.45076 1.21118 0.96792 0.89705 1.02105 1.21857 0.91713 0.97627 1.04442 1.21526 1.00491 0.89721 0.89220 1.48217 1.06553 1.52237 1.28619 1.21366 0.86827 0.78207 0.83251 1.90658 1.14995 1.59730 1.74887 1.21515 0.95314 0.95167 0.91180 0.92662 1.21775 1.01261 0.96867 0.99104 1.60683 1.24565 1.15299 1.29597 1.19297 0.90772 0.85113 0.93605 0.97622 1.21261 1.33517 1.06904 0.90975 0.91695 1.24965 0.95742 0.95217 0.98679 1.69865 1.37642 1.11731 1.34516 0.86573 0.77231 0.78478 0.85550 1.20836 1.21536 1.19944 1.21846 1.00094 1.01720 0.93197 1.21891 1.00067 0.99293 0.99583 1.21737 0.79852 0.96140 1.04046 1.21890 1.02013 0.96114 0.96547 0.90236 0.91277 0.91445 0.91310 0.91186 0.87072 0.89861 0.90366 0.91503 0.88370 0.89168 0.94103 0.92303 0.85104 0.93127 0.88013 0.93946 0.94702 0.93900 0.94310 0.88034 0.90912 0.89036 0.90494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 10.29 37.16 0.38 -0.38 16 2 C 0.06 0.45 6.19 37.16 0.23 0.68 16 3 O -0.36 -3.26 10.10 -39.25 -0.40 -3.66 16 4 C 0.47 4.76 7.26 36.01 0.26 5.02 16 5 O -0.51 -6.57 15.73 -18.75 -0.29 -6.87 16 6 C -0.08 -0.66 2.59 -91.73 -0.24 -0.89 16 7 C -0.12 -1.13 4.65 -26.61 -0.12 -1.26 16 8 C 0.11 1.22 6.42 -3.71 -0.02 1.19 16 9 N -0.62 -7.85 2.98 -173.03 -0.52 -8.37 16 10 C 0.51 8.70 6.74 -10.98 -0.07 8.63 16 11 O -0.53 -10.67 15.56 5.56 0.09 -10.58 16 12 C 0.08 1.49 2.16 -68.87 -0.15 1.34 16 13 H 0.06 0.97 5.61 -51.93 -0.29 0.68 16 14 C -0.13 -2.32 9.04 37.16 0.34 -1.98 16 15 N -0.67 -14.45 5.95 -102.17 -0.61 -15.06 16 16 C 0.22 5.28 2.03 -68.87 -0.14 5.14 16 17 H 0.01 0.16 7.28 -51.93 -0.38 -0.22 16 18 C -0.49 -12.92 7.43 -34.44 -0.26 -13.18 16 19 H 0.06 1.76 7.39 -52.48 -0.39 1.37 16 20 C 0.05 1.45 5.29 -17.82 -0.09 1.36 16 21 N -0.90 -24.76 11.28 55.43 0.63 -24.14 16 22 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 26 C -0.13 -3.04 5.30 -26.73 -0.14 -3.18 16 27 C -0.15 -2.95 9.81 37.16 0.36 -2.58 16 28 C 0.11 1.03 6.04 -3.93 -0.02 1.01 16 29 C -0.13 -1.07 5.28 -26.83 -0.14 -1.22 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 34 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 35 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 37 H 0.08 0.90 8.13 -51.93 -0.42 0.48 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.10 1.23 7.03 -51.93 -0.37 0.87 16 40 H 0.09 1.79 6.49 -51.93 -0.34 1.45 16 41 H 0.04 0.58 7.59 -51.93 -0.39 0.18 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.33 7.08 5.56 -39.29 -0.22 6.86 16 44 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 45 H 0.10 2.65 5.94 -51.93 -0.31 2.34 16 46 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.03 0.64 6.42 -51.93 -0.33 0.31 16 48 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.10 1.08 5.08 -51.93 -0.26 0.82 16 51 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 52 H 0.09 0.64 8.08 -51.93 -0.42 0.22 16 53 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 411.80 15.07 6.21 6.21 Total: -1.00 -31.57 411.80 -8.92 -40.49 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -9.17 Total: 6.28 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 0.17 Total: -0.32 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: -0.50 Total: -47.56 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.60 Total: -21.11 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -31.57 -8.92 -40.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579855006.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.798 kcal (2) G-P(sol) polarization free energy of solvation -31.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds