Wall clock time and date at job start Sat Apr 11 2020 06:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47318 * 2 1 4 4 H 1.09010 * 109.46928 * 305.69054 * 3 2 1 5 5 C 1.50704 * 109.47419 * 185.69420 * 3 2 1 6 6 H 1.07998 * 119.99998 * 275.00160 * 5 3 2 7 7 C 1.37874 * 120.00139 * 95.00289 * 5 3 2 8 8 N 1.31511 * 120.00282 * 184.83070 * 7 5 3 9 9 Si 1.86807 * 119.99980 * 4.82921 * 7 5 3 10 10 H 1.48494 * 109.46914 * 84.86108 * 9 7 5 11 11 H 1.48503 * 109.47090 * 204.86541 * 9 7 5 12 12 H 1.48503 * 109.47113 * 324.86230 * 9 7 5 13 13 N 1.46497 * 109.47343 * 65.69152 * 3 2 1 14 14 C 1.34782 * 119.99844 * 275.00265 * 13 3 2 15 15 O 1.21277 * 120.00179 * 359.97438 * 14 13 3 16 16 C 1.50696 * 119.99814 * 179.97438 * 14 13 3 17 17 C 1.52999 * 109.47165 * 180.02562 * 16 14 13 18 18 H 1.09004 * 109.47194 * 304.99780 * 17 16 14 19 19 N 1.46498 * 109.47109 * 65.00189 * 17 16 14 20 20 C 1.34779 * 120.00030 * 205.00207 * 19 17 16 21 21 O 1.21513 * 119.99969 * 0.02562 * 20 19 17 22 22 O 1.34635 * 120.00442 * 179.97438 * 20 19 17 23 23 C 1.45198 * 117.00404 * 179.97438 * 22 20 19 24 24 C 1.53002 * 109.47019 * 60.00085 * 23 22 20 25 25 C 1.53002 * 109.47146 * 180.02562 * 23 22 20 26 26 C 1.53002 * 109.47121 * 300.00559 * 23 22 20 27 27 C 1.53002 * 109.47208 * 185.00110 * 17 16 14 28 28 C 1.53004 * 117.49806 * 248.74423 * 27 17 16 29 29 C 1.52997 * 117.49799 * 180.08598 * 27 17 16 30 30 H 1.09000 * 109.46969 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47484 * 300.00122 * 1 2 3 32 32 H 1.08996 * 109.47294 * 60.00134 * 1 2 3 33 33 H 1.09003 * 109.47484 * 239.99877 * 2 1 3 34 34 H 1.09004 * 109.47607 * 119.99855 * 2 1 3 35 35 H 0.96999 * 120.00066 * 179.97438 * 8 7 5 36 36 H 0.96996 * 120.00151 * 94.99943 * 13 3 2 37 37 H 1.09008 * 109.47449 * 300.00080 * 16 14 13 38 38 H 1.09004 * 109.47380 * 60.00369 * 16 14 13 39 39 H 0.96994 * 120.00304 * 24.99664 * 19 17 16 40 40 H 1.09003 * 109.46577 * 60.00288 * 24 23 22 41 41 H 1.09001 * 109.47166 * 179.97438 * 24 23 22 42 42 H 1.08994 * 109.47315 * 300.00639 * 24 23 22 43 43 H 1.08998 * 109.47388 * 59.99706 * 25 23 22 44 44 H 1.09001 * 109.47007 * 180.02562 * 25 23 22 45 45 H 1.09001 * 109.46813 * 300.00034 * 25 23 22 46 46 H 1.08997 * 109.47356 * 59.99339 * 26 23 22 47 47 H 1.09002 * 109.47118 * 180.02562 * 26 23 22 48 48 H 1.09004 * 109.47078 * 299.99931 * 26 23 22 49 49 H 1.09001 * 115.55094 * 34.41756 * 27 17 16 50 50 H 1.08999 * 117.49728 * 0.02562 * 28 27 17 51 51 H 1.08998 * 117.49781 * 145.01999 * 28 27 17 52 52 H 1.09002 * 117.49804 * 214.97965 * 29 27 17 53 53 H 1.09001 * 117.50147 * 359.97438 * 29 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9849 -0.8347 5 6 3.5404 1.4448 -0.1410 6 1 4.1650 1.3334 0.7329 7 6 4.1157 1.5893 -1.3856 8 7 5.4204 1.4964 -1.5218 9 14 3.0418 1.9171 -2.8786 10 1 2.7753 3.3739 -2.9864 11 1 3.7401 1.4495 -4.1029 12 1 1.7561 1.1881 -2.7332 13 7 1.6667 2.0925 1.2587 14 6 0.4508 2.6589 1.3900 15 8 -0.3342 2.6309 0.4659 16 6 0.0667 3.3270 2.6850 17 6 -1.3540 3.8833 2.5700 18 1 -1.4167 4.5437 1.7050 19 7 -2.3003 2.7766 2.4093 20 6 -3.4852 2.9860 1.8022 21 8 -3.7684 4.0926 1.3877 22 8 -4.3548 1.9688 1.6540 23 6 -5.6118 2.2673 0.9913 24 6 -5.3334 2.7795 -0.4233 25 6 -6.4628 0.9980 0.9164 26 6 -6.3638 3.3391 1.7829 27 6 -1.6982 4.6688 3.8371 28 6 -2.7583 4.0776 4.7686 29 6 -3.0864 5.3068 3.9175 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 5.8251 1.5977 -2.3975 36 1 2.2946 2.1151 1.9977 37 1 0.1069 2.5991 3.4954 38 1 0.7604 4.1415 2.8934 39 1 -2.0741 1.8932 2.7398 40 1 -4.7976 2.0159 -0.9873 41 1 -6.2770 3.0031 -0.9210 42 1 -4.7272 3.6837 -0.3696 43 1 -6.6611 0.6335 1.9243 44 1 -7.4062 1.2220 0.4185 45 1 -5.9272 0.2342 0.3526 46 1 -5.7576 4.2434 1.8367 47 1 -7.3076 3.5629 1.2856 48 1 -6.5621 2.9743 2.7907 49 1 -0.8692 5.2078 4.2959 50 1 -3.2101 3.1289 4.4789 51 1 -2.6269 4.2279 5.8402 52 1 -3.1709 6.2654 4.4295 53 1 -3.7544 5.1674 3.0675 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762717972.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:24 Heat of formation + Delta-G solvation = -124.743476 kcal Electronic energy + Delta-G solvation = -32192.937592 eV Core-core repulsion = 28064.566050 eV Total energy + Delta-G solvation = -4128.371542 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.96360 -40.79318 -39.36237 -37.36276 -36.91473 -35.42340 -34.59050 -34.36957 -33.28945 -31.59239 -29.41328 -28.35749 -28.28481 -26.11158 -24.52570 -23.70187 -23.18678 -22.00442 -21.15893 -21.00536 -20.87850 -19.26096 -19.06562 -17.84234 -17.64617 -17.43812 -17.11415 -16.72164 -16.16015 -16.06919 -15.85839 -15.51923 -15.22959 -14.95582 -14.79465 -14.50915 -14.29228 -14.10289 -13.78643 -13.63762 -13.40279 -13.18010 -13.13430 -12.97588 -12.93780 -12.87704 -12.76499 -12.68282 -12.50285 -12.48758 -12.32558 -12.25076 -12.19296 -11.89276 -11.66766 -11.31207 -11.25867 -11.18714 -11.00175 -10.84762 -10.84143 -10.52072 -10.00019 -9.60669 -8.39752 -6.43885 1.25743 1.26962 1.31096 1.41387 1.91158 1.94134 2.25001 2.51651 2.93882 3.04007 3.25509 3.68034 3.77281 3.79872 3.83620 3.96511 4.10676 4.16990 4.31872 4.34553 4.42728 4.43077 4.50058 4.55765 4.60403 4.62267 4.71396 4.76379 4.76527 4.84067 4.86209 4.87927 4.88534 4.99769 5.06412 5.11839 5.12988 5.26607 5.27796 5.29646 5.30666 5.32325 5.40803 5.44739 5.50606 5.57574 5.69987 5.85595 6.15834 6.51088 6.62542 7.02941 7.22797 7.48016 7.62271 8.75404 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013216 B = 0.003384 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.172701 B = 8273.405339 C = 9461.877449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.121 4.121 3 C 0.243 3.757 4 H 0.024 0.976 5 C -0.522 4.522 6 H 0.059 0.941 7 C 0.035 3.965 8 N -0.930 5.930 9 Si 0.922 3.078 10 H -0.278 1.278 11 H -0.279 1.279 12 H -0.260 1.260 13 N -0.704 5.704 14 C 0.493 3.507 15 O -0.580 6.580 16 C -0.136 4.136 17 C 0.214 3.786 18 H 0.065 0.935 19 N -0.684 5.684 20 C 0.652 3.348 21 O -0.587 6.587 22 O -0.375 6.375 23 C 0.127 3.873 24 C -0.180 4.180 25 C -0.135 4.135 26 C -0.174 4.174 27 C -0.164 4.164 28 C -0.162 4.162 29 C -0.199 4.199 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.024 0.976 33 H 0.043 0.957 34 H 0.064 0.936 35 H 0.269 0.731 36 H 0.406 0.594 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.408 0.592 40 H 0.047 0.953 41 H 0.091 0.909 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.102 0.898 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.088 0.912 48 H 0.065 0.935 49 H 0.138 0.862 50 H 0.084 0.916 51 H 0.110 0.890 52 H 0.099 0.901 53 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.789 2.182 13.887 25.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.161 4.161 3 C 0.139 3.861 4 H 0.042 0.958 5 C -0.561 4.561 6 H 0.077 0.923 7 C -0.165 4.165 8 N -0.569 5.569 9 Si 0.748 3.252 10 H -0.204 1.204 11 H -0.205 1.205 12 H -0.184 1.184 13 N -0.354 5.354 14 C 0.280 3.720 15 O -0.460 6.460 16 C -0.176 4.176 17 C 0.110 3.890 18 H 0.084 0.916 19 N -0.342 5.342 20 C 0.406 3.594 21 O -0.478 6.478 22 O -0.290 6.290 23 C 0.090 3.910 24 C -0.237 4.237 25 C -0.192 4.192 26 C -0.231 4.231 27 C -0.183 4.183 28 C -0.199 4.199 29 C -0.235 4.235 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.241 0.759 37 H 0.150 0.850 38 H 0.154 0.846 39 H 0.244 0.756 40 H 0.066 0.934 41 H 0.110 0.890 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.121 0.879 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.107 0.893 48 H 0.084 0.916 49 H 0.156 0.844 50 H 0.102 0.898 51 H 0.129 0.871 52 H 0.117 0.883 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -22.382 2.670 12.849 25.945 hybrid contribution 0.609 -0.090 -0.956 1.137 sum -21.773 2.580 11.892 24.943 Atomic orbital electron populations 1.21717 0.95779 0.99937 1.01091 1.21966 0.94917 0.98144 1.01026 1.18809 0.92923 0.90149 0.84229 0.95836 1.21260 0.90526 1.49826 0.94441 0.92259 1.25535 0.95580 0.94234 1.01190 1.69969 1.11110 1.50708 1.25138 0.86132 0.79902 0.79042 0.80142 1.20360 1.20508 1.18413 1.46316 1.15672 1.56379 1.17043 1.21240 0.81561 0.78567 0.90616 1.90715 1.51545 1.60598 1.43166 1.22031 0.96335 1.03766 0.95477 1.20049 0.85695 0.86387 0.96885 0.91648 1.44580 1.14585 1.14305 1.60759 1.18127 0.81498 0.82483 0.77266 1.90810 1.77896 1.24875 1.54221 1.86295 1.29343 1.38949 1.74388 1.22337 0.79480 0.97780 0.91363 1.22464 1.03568 1.01972 0.95716 1.21876 0.99071 0.94446 1.03840 1.22433 1.01261 0.99020 1.00426 1.22792 0.94332 1.03595 0.97579 1.22935 1.02195 0.97217 0.97515 1.23296 0.99097 0.97749 1.03406 0.92870 0.92441 0.95720 0.93848 0.91679 0.92143 0.75911 0.84986 0.84586 0.75621 0.93360 0.89021 0.92223 0.90730 0.87935 0.92021 0.91767 0.89286 0.91594 0.84382 0.89775 0.87144 0.88299 0.89033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.79 8.53 71.98 0.61 -4.18 16 2 C -0.12 -5.01 5.59 30.59 0.17 -4.84 16 3 C 0.24 10.99 1.89 44.25 0.08 11.07 16 4 H 0.02 1.21 4.73 -2.38 -0.01 1.20 16 5 C -0.52 -27.52 9.05 25.60 0.23 -27.29 16 6 H 0.06 3.30 8.06 -2.91 -0.02 3.27 16 7 C 0.03 1.95 5.47 84.65 0.46 2.42 16 8 N -0.93 -55.20 13.96 21.45 0.30 -54.90 16 9 Si 0.92 45.25 26.99 68.60 1.85 47.10 16 10 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 12 H -0.26 -12.61 6.82 99.48 0.68 -11.94 16 13 N -0.70 -24.95 5.03 -446.09 -2.24 -27.19 16 14 C 0.49 15.95 6.29 87.66 0.55 16.50 16 15 O -0.58 -23.70 12.50 -3.02 -0.04 -23.74 16 16 C -0.14 -2.74 5.22 29.85 0.16 -2.58 16 17 C 0.21 5.00 1.99 44.99 0.09 5.09 16 18 H 0.07 2.07 7.39 -2.39 -0.02 2.05 16 19 N -0.68 -16.99 2.76 -570.12 -1.57 -18.56 16 20 C 0.65 19.07 6.89 129.79 0.89 19.97 16 21 O -0.59 -19.46 8.91 19.80 0.18 -19.28 16 22 O -0.37 -10.15 9.94 -55.45 -0.55 -10.70 16 23 C 0.13 2.80 1.13 -10.79 -0.01 2.79 16 24 C -0.18 -4.43 8.37 71.98 0.60 -3.83 16 25 C -0.14 -2.10 8.85 71.98 0.64 -1.46 16 26 C -0.17 -3.42 8.37 71.98 0.60 -2.82 16 27 C -0.16 -2.95 5.71 -10.79 -0.06 -3.01 16 28 C -0.16 -2.71 9.74 30.62 0.30 -2.41 16 29 C -0.20 -4.13 9.82 30.62 0.30 -3.82 16 30 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.06 2.04 5.63 -2.39 -0.01 2.03 16 32 H 0.02 1.02 7.89 -2.39 -0.02 1.00 16 33 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 35 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 36 H 0.41 12.24 8.59 -92.71 -0.80 11.44 16 37 H 0.13 1.79 8.14 -2.38 -0.02 1.77 16 38 H 0.14 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.41 8.88 8.71 -92.71 -0.81 8.07 16 40 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.06 1.85 5.88 -2.39 -0.01 1.84 16 43 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.06 1.61 5.88 -2.39 -0.01 1.60 16 47 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 49 H 0.14 1.82 8.11 -2.39 -0.02 1.80 16 50 H 0.08 1.57 6.67 -2.39 -0.02 1.56 16 51 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 52 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 53 H 0.09 2.48 5.01 -2.39 -0.01 2.47 16 Total: -1.00 -71.82 408.89 2.83 -68.99 By element: Atomic # 1 Polarization: 37.41 SS G_CDS: -0.71 Total: 36.69 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 5.62 Total: 1.59 kcal Atomic # 7 Polarization: -97.14 SS G_CDS: -3.52 Total: -100.66 kcal Atomic # 8 Polarization: -53.30 SS G_CDS: -0.41 Total: -53.71 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.85 Total: 47.10 kcal Total: -71.82 2.83 -68.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762717972.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.755 kcal (2) G-P(sol) polarization free energy of solvation -71.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds