Wall clock time and date at job start Sat Apr 11 2020 06:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47409 * 59.99923 * 9 7 5 11 11 H 1.48501 * 109.46990 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47590 * 299.99919 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21281 * 120.00120 * 0.02562 * 14 13 3 16 16 C 1.50696 * 120.00025 * 179.97438 * 14 13 3 17 17 C 1.53004 * 109.47576 * 179.97438 * 16 14 13 18 18 H 1.09005 * 109.46761 * 305.00407 * 17 16 14 19 19 N 1.46500 * 109.47052 * 64.99628 * 17 16 14 20 20 C 1.34777 * 120.00501 * 205.00163 * 19 17 16 21 21 O 1.21511 * 119.99557 * 0.02562 * 20 19 17 22 22 O 1.34630 * 120.00185 * 180.02562 * 20 19 17 23 23 C 1.45207 * 116.99901 * 180.02562 * 22 20 19 24 24 C 1.52994 * 109.47145 * 60.00067 * 23 22 20 25 25 C 1.52997 * 109.46916 * 180.02562 * 23 22 20 26 26 C 1.53002 * 109.46963 * 300.00074 * 23 22 20 27 27 C 1.52993 * 109.47658 * 184.99857 * 17 16 14 28 28 C 1.52996 * 117.50405 * 248.74939 * 27 17 16 29 29 C 1.53001 * 117.50025 * 180.08343 * 27 17 16 30 30 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 33 33 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 34 34 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 35 35 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 36 36 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 37 37 H 1.09000 * 109.47302 * 299.99971 * 16 14 13 38 38 H 1.08997 * 109.47408 * 60.00133 * 16 14 13 39 39 H 0.97004 * 120.00006 * 25.00903 * 19 17 16 40 40 H 1.09005 * 109.47512 * 60.00324 * 24 23 22 41 41 H 1.08995 * 109.47030 * 180.02562 * 24 23 22 42 42 H 1.09008 * 109.47342 * 299.99979 * 24 23 22 43 43 H 1.08990 * 109.47791 * 59.99524 * 25 23 22 44 44 H 1.09007 * 109.46822 * 180.02562 * 25 23 22 45 45 H 1.09005 * 109.46968 * 299.99203 * 25 23 22 46 46 H 1.09003 * 109.47262 * 59.99803 * 26 23 22 47 47 H 1.08995 * 109.47179 * 180.02562 * 26 23 22 48 48 H 1.09003 * 109.47280 * 300.00309 * 26 23 22 49 49 H 1.09003 * 115.54868 * 34.42007 * 27 17 16 50 50 H 1.09001 * 117.49551 * 359.97438 * 28 27 17 51 51 H 1.08995 * 117.50137 * 145.02127 * 28 27 17 52 52 H 1.08997 * 117.49942 * 214.98055 * 29 27 17 53 53 H 1.08994 * 117.49929 * 359.97438 * 29 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.5005 2.2800 1.3808 11 1 6.3978 0.2167 2.6502 12 1 6.5967 0.1454 0.2342 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3393 2.6327 -0.4340 16 6 0.0366 3.3387 -2.6543 17 6 -1.3827 3.8944 -2.5211 18 1 -2.0596 3.0940 -2.2219 19 7 -1.3998 4.9524 -1.5079 20 6 -2.5425 5.2415 -0.8544 21 8 -3.5586 4.6241 -1.1053 22 8 -2.5582 6.2142 0.0762 23 6 -3.8238 6.4707 0.7403 24 6 -4.2871 5.2038 1.4621 25 6 -3.6467 7.6011 1.7561 26 6 -4.8712 6.8781 -0.2979 27 6 -1.8341 4.4683 -3.8655 28 6 -2.0032 5.9857 -3.9650 29 6 -3.2356 5.0779 -3.9387 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.8293 -0.0605 2.9501 36 1 2.2718 2.1232 -1.9978 37 1 0.7280 4.1542 -2.8665 38 1 0.0679 2.6147 -3.4685 39 1 -0.5886 5.4451 -1.3075 40 1 -3.5409 4.9135 2.2018 41 1 -5.2372 5.3962 1.9602 42 1 -4.4133 4.3987 0.7380 43 1 -3.3168 8.5036 1.2417 44 1 -4.5967 7.7934 2.2550 45 1 -2.9005 7.3112 2.4959 46 1 -4.9973 6.0731 -1.0220 47 1 -5.8210 7.0711 0.2006 48 1 -4.5411 7.7808 -0.8122 49 1 -1.4667 3.9440 -4.7477 50 1 -1.7933 6.5750 -3.0724 51 1 -1.7475 6.4595 -4.9126 52 1 -3.7899 4.9550 -4.8691 53 1 -3.8361 5.0696 -3.0291 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762717974.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:30 Heat of formation + Delta-G solvation = -122.734425 kcal Electronic energy + Delta-G solvation = -31925.537680 eV Core-core repulsion = 27797.253257 eV Total energy + Delta-G solvation = -4128.284423 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.96216 -40.73169 -39.34200 -37.36054 -36.88156 -35.42393 -34.59084 -34.24848 -32.97297 -31.58692 -28.94082 -28.35943 -28.28962 -26.12777 -24.73017 -23.70936 -23.18002 -22.00267 -21.09253 -20.93975 -20.86171 -19.20004 -18.77736 -17.80762 -17.65332 -17.13401 -17.09723 -16.62963 -16.23010 -16.06014 -15.96466 -15.47856 -15.22459 -14.76672 -14.59676 -14.45236 -14.42593 -13.87578 -13.51812 -13.41166 -13.24879 -13.14893 -13.13139 -12.94847 -12.87711 -12.85222 -12.69350 -12.67896 -12.59499 -12.48973 -12.26835 -12.20536 -12.17104 -12.00864 -11.56937 -11.31740 -11.25269 -11.04184 -10.99237 -10.84515 -10.57021 -10.41592 -10.00257 -9.52811 -8.14117 -6.31432 1.27240 1.45466 1.46915 1.54611 1.90804 1.99828 2.37697 2.68028 2.96083 3.15358 3.25183 3.68804 3.76916 3.80489 3.85108 3.96113 4.10784 4.18618 4.33475 4.46809 4.49549 4.50754 4.56852 4.57689 4.61978 4.68541 4.75103 4.75954 4.80116 4.83775 4.87507 4.88182 4.99974 5.05904 5.08574 5.12567 5.27053 5.27530 5.29628 5.32142 5.41045 5.45541 5.50837 5.58510 5.68045 5.70599 5.82842 5.98375 6.20406 6.49481 6.78472 7.10674 7.36972 7.46682 7.72566 8.90718 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012816 B = 0.003029 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.170588 B = 9241.800482 C =10223.115630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.120 4.120 3 C 0.282 3.718 4 H -0.007 1.007 5 C -0.546 4.546 6 H 0.073 0.927 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.968 3.032 10 H -0.271 1.271 11 H -0.290 1.290 12 H -0.264 1.264 13 N -0.707 5.707 14 C 0.490 3.510 15 O -0.581 6.581 16 C -0.135 4.135 17 C 0.214 3.786 18 H 0.066 0.934 19 N -0.687 5.687 20 C 0.652 3.348 21 O -0.585 6.585 22 O -0.378 6.378 23 C 0.125 3.875 24 C -0.180 4.180 25 C -0.136 4.136 26 C -0.173 4.173 27 C -0.162 4.162 28 C -0.164 4.164 29 C -0.197 4.197 30 H 0.019 0.981 31 H 0.040 0.960 32 H 0.047 0.953 33 H 0.067 0.933 34 H 0.041 0.959 35 H 0.263 0.737 36 H 0.404 0.596 37 H 0.128 0.872 38 H 0.141 0.859 39 H 0.407 0.593 40 H 0.044 0.956 41 H 0.093 0.907 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.104 0.896 45 H 0.058 0.942 46 H 0.064 0.936 47 H 0.090 0.910 48 H 0.065 0.935 49 H 0.142 0.858 50 H 0.081 0.919 51 H 0.112 0.888 52 H 0.101 0.899 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.259 13.818 -12.066 21.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.159 4.159 3 C 0.178 3.822 4 H 0.011 0.989 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.793 3.207 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.189 1.189 13 N -0.357 5.357 14 C 0.278 3.722 15 O -0.462 6.462 16 C -0.175 4.175 17 C 0.110 3.890 18 H 0.084 0.916 19 N -0.344 5.344 20 C 0.406 3.594 21 O -0.477 6.477 22 O -0.293 6.293 23 C 0.089 3.911 24 C -0.237 4.237 25 C -0.193 4.193 26 C -0.230 4.230 27 C -0.182 4.182 28 C -0.201 4.201 29 C -0.234 4.234 30 H 0.038 0.962 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.239 0.761 37 H 0.146 0.854 38 H 0.158 0.842 39 H 0.242 0.758 40 H 0.064 0.936 41 H 0.112 0.888 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.123 0.877 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.109 0.891 48 H 0.084 0.916 49 H 0.159 0.841 50 H 0.099 0.901 51 H 0.130 0.870 52 H 0.119 0.881 53 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.322 13.427 -11.280 21.432 hybrid contribution 1.422 -0.306 0.636 1.588 sum -10.900 13.121 -10.644 20.106 Atomic orbital electron populations 1.21643 0.97156 0.98783 1.00102 1.21774 0.93469 0.99552 1.01106 1.18241 0.93326 0.88898 0.81756 0.98900 1.21589 0.91629 1.38673 1.06558 0.90858 1.25778 1.03177 0.94518 0.95150 1.70059 1.37076 1.38503 1.09860 0.85457 0.79335 0.78446 0.77451 1.19594 1.21538 1.18860 1.46239 1.15849 1.56276 1.17302 1.21243 0.81662 0.78777 0.90554 1.90726 1.52210 1.60709 1.42553 1.22027 0.96627 1.02979 0.95828 1.20077 0.96153 0.87753 0.85052 0.91591 1.44636 1.09892 1.39321 1.40596 1.18120 0.84415 0.78759 0.78077 1.90797 1.33369 1.54536 1.68949 1.86300 1.39951 1.52445 1.50601 1.22362 0.80004 0.96257 0.92466 1.22464 1.02383 0.98137 1.00728 1.21882 1.04224 0.96020 0.97150 1.22424 0.98914 1.02234 0.99424 1.22793 1.00720 0.96846 0.97792 1.22937 1.01853 0.92054 1.03245 1.23299 0.91435 1.04873 1.03820 0.96216 0.94054 0.93433 0.91468 0.93974 0.92785 0.76099 0.85408 0.84167 0.75811 0.93637 0.88807 0.92151 0.90714 0.87735 0.92269 0.91690 0.89131 0.91596 0.84075 0.90060 0.87014 0.88061 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 8.51 71.98 0.61 -4.84 16 2 C -0.12 -5.88 5.45 30.59 0.17 -5.72 16 3 C 0.28 14.06 2.24 44.24 0.10 14.16 16 4 H -0.01 -0.42 7.58 -2.38 -0.02 -0.44 16 5 C -0.55 -28.23 8.73 25.60 0.22 -28.00 16 6 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 7 C 0.01 0.73 5.29 84.66 0.45 1.18 16 8 N -0.92 -52.57 11.29 21.45 0.24 -52.33 16 9 Si 0.97 41.62 29.54 68.60 2.03 43.65 16 10 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 11 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 13 N -0.71 -26.76 5.02 -446.09 -2.24 -29.00 16 14 C 0.49 17.25 6.26 87.66 0.55 17.80 16 15 O -0.58 -26.17 12.49 -3.03 -0.04 -26.21 16 16 C -0.13 -2.92 5.23 29.85 0.16 -2.77 16 17 C 0.21 5.34 1.99 44.99 0.09 5.43 16 18 H 0.07 2.17 7.39 -2.38 -0.02 2.15 16 19 N -0.69 -19.07 2.76 -570.14 -1.57 -20.64 16 20 C 0.65 20.81 6.89 129.79 0.89 21.70 16 21 O -0.59 -20.51 8.91 19.81 0.18 -20.33 16 22 O -0.38 -11.37 9.94 -55.40 -0.55 -11.92 16 23 C 0.13 3.06 1.13 -10.80 -0.01 3.05 16 24 C -0.18 -4.84 8.37 71.98 0.60 -4.23 16 25 C -0.14 -2.42 8.85 71.98 0.64 -1.78 16 26 C -0.17 -3.65 8.37 71.98 0.60 -3.05 16 27 C -0.16 -3.05 5.70 -10.80 -0.06 -3.12 16 28 C -0.16 -2.94 9.74 30.62 0.30 -2.64 16 29 C -0.20 -4.25 9.82 30.62 0.30 -3.94 16 30 H 0.02 0.97 7.85 -2.39 -0.02 0.95 16 31 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.05 2.06 5.65 -2.38 -0.01 2.04 16 33 H 0.07 3.73 5.95 -2.39 -0.01 3.72 16 34 H 0.04 1.92 8.14 -2.39 -0.02 1.91 16 35 H 0.26 14.41 8.31 -92.70 -0.77 13.64 16 36 H 0.40 12.51 8.54 -92.71 -0.79 11.71 16 37 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.14 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.41 10.38 8.71 -92.71 -0.81 9.57 16 40 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.06 1.99 5.88 -2.38 -0.01 1.98 16 43 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 45 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 46 H 0.06 1.72 5.88 -2.39 -0.01 1.70 16 47 H 0.09 1.45 8.14 -2.39 -0.02 1.44 16 48 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 49 H 0.14 1.88 8.11 -2.39 -0.02 1.86 16 50 H 0.08 1.67 6.67 -2.39 -0.02 1.65 16 51 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 52 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 53 H 0.09 2.54 5.01 -2.39 -0.01 2.53 16 Total: -1.00 -71.91 408.98 2.97 -68.94 By element: Atomic # 1 Polarization: 45.31 SS G_CDS: -0.68 Total: 44.63 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 5.61 Total: 3.22 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -3.57 Total: -101.98 kcal Atomic # 8 Polarization: -58.05 SS G_CDS: -0.41 Total: -58.46 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -71.91 2.97 -68.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762717974.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.791 kcal (2) G-P(sol) polarization free energy of solvation -71.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds