Wall clock time and date at job start Sat Apr 11 2020 06:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.52999 * 109.47344 * 2 1 4 4 H 1.08998 * 109.47697 * 304.99993 * 3 2 1 5 5 C 1.50698 * 109.47384 * 184.99985 * 3 2 1 6 6 O 1.21285 * 120.00195 * 240.00386 * 5 3 2 7 7 N 1.34779 * 120.00054 * 60.00073 * 5 3 2 8 8 C 1.46499 * 120.00333 * 180.02562 * 7 5 3 9 9 C 1.53000 * 109.47243 * 178.27741 * 8 7 5 10 10 C 1.50696 * 115.55052 * 65.14058 * 9 8 7 11 11 H 1.08002 * 120.00280 * 265.40780 * 10 9 8 12 12 C 1.37873 * 120.00011 * 85.40548 * 10 9 8 13 13 N 1.31516 * 120.00250 * 353.55513 * 12 10 9 14 14 Si 1.86803 * 120.00261 * 173.54939 * 12 10 9 15 15 H 1.48497 * 109.46612 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46784 * 119.99923 * 14 12 10 17 17 H 1.48491 * 109.47323 * 240.00375 * 14 12 10 18 18 C 1.52999 * 117.49627 * 279.46994 * 9 8 7 19 19 C 1.52996 * 117.49714 * 210.81386 * 9 8 7 20 20 N 1.46504 * 109.46662 * 65.00316 * 3 2 1 21 21 C 1.46496 * 120.00193 * 60.00128 * 20 3 2 22 22 C 1.34773 * 119.99738 * 240.27261 * 20 3 2 23 23 O 1.21510 * 120.00215 * 359.72487 * 22 20 3 24 24 O 1.34641 * 120.00397 * 179.72660 * 22 20 3 25 25 C 1.45186 * 117.00600 * 179.97438 * 24 22 20 26 26 C 1.53009 * 109.47167 * 60.00091 * 25 24 22 27 27 C 1.53001 * 109.47505 * 179.97438 * 25 24 22 28 28 C 1.52999 * 109.47399 * 300.00210 * 25 24 22 29 29 H 1.09006 * 109.47426 * 299.99865 * 1 2 3 30 30 H 1.09004 * 109.47201 * 59.99361 * 1 2 3 31 31 H 1.08996 * 109.47462 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47426 * 240.00135 * 2 1 3 33 33 H 1.08995 * 109.47395 * 120.00577 * 2 1 3 34 34 H 0.97004 * 119.99463 * 0.02562 * 7 5 3 35 35 H 1.08999 * 109.46893 * 298.27686 * 8 7 5 36 36 H 1.09002 * 109.47315 * 58.27447 * 8 7 5 37 37 H 0.96996 * 120.00195 * 185.05472 * 13 12 10 38 38 H 1.09005 * 117.49863 * 0.02562 * 18 9 8 39 39 H 1.09005 * 117.50050 * 145.01777 * 18 9 8 40 40 H 1.09005 * 117.50114 * 214.97743 * 19 9 8 41 41 H 1.09008 * 117.50408 * 359.97338 * 19 9 8 42 42 H 1.09006 * 109.47521 * 89.99777 * 21 20 3 43 43 H 1.08999 * 109.47381 * 209.99968 * 21 20 3 44 44 H 1.09003 * 109.47235 * 329.99816 * 21 20 3 45 45 H 1.08994 * 109.46711 * 59.99867 * 26 25 24 46 46 H 1.08996 * 109.47328 * 180.02562 * 26 25 24 47 47 H 1.08997 * 109.46867 * 300.00140 * 26 25 24 48 48 H 1.08997 * 109.47201 * 60.00220 * 27 25 24 49 49 H 1.08998 * 109.47086 * 180.02562 * 27 25 24 50 50 H 1.08999 * 109.46899 * 300.00179 * 27 25 24 51 51 H 1.09003 * 109.47477 * 59.99817 * 28 25 24 52 52 H 1.09004 * 109.47329 * 180.02562 * 28 25 24 53 53 H 1.08997 * 109.46926 * 299.99547 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5418 1.4443 -0.1238 6 8 4.2216 1.9435 0.7478 7 7 4.1297 0.8911 -1.2032 8 6 5.5897 0.8923 -1.3233 9 6 5.9962 0.1706 -2.6097 10 6 5.5669 0.8360 -3.8918 11 1 4.6469 0.5383 -4.3729 12 6 6.3484 1.8248 -4.4506 13 7 7.4004 2.2762 -3.8031 14 14 5.9135 2.5232 -6.1277 15 1 4.6931 1.8514 -6.6422 16 1 5.6613 3.9816 -6.0062 17 1 7.0397 2.2921 -7.0674 18 6 6.0248 -1.3589 -2.5826 19 6 7.3356 -0.5690 -2.6117 20 7 1.6524 2.0974 1.2519 21 6 2.1139 1.5588 2.5337 22 6 0.8668 3.1921 1.2246 23 8 0.4841 3.6389 0.1614 24 8 0.5061 3.7908 2.3753 25 6 -0.3406 4.9655 2.2700 26 6 -1.6504 4.5895 1.5742 27 6 -0.6437 5.5030 3.6701 28 6 0.3792 6.0417 1.4548 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.5860 0.4922 -1.9004 35 1 5.9509 1.9203 -1.3539 36 1 6.0254 0.3795 -0.4658 37 1 7.9075 3.0214 -4.1614 38 1 5.7536 -1.8509 -1.6485 39 1 5.7333 -1.8839 -3.4924 40 1 7.9061 -0.5746 -3.5405 41 1 7.9274 -0.5410 -1.6967 42 1 3.0653 2.0192 2.8000 43 1 1.3762 1.7764 3.3061 44 1 2.2436 0.4798 2.4490 45 1 -2.1632 3.8228 2.1549 46 1 -2.2859 5.4714 1.4947 47 1 -1.4349 4.2064 0.5768 48 1 0.2891 5.7709 4.1663 49 1 -1.2797 6.3846 3.5910 50 1 -1.1567 4.7362 4.2504 51 1 0.5947 5.6587 0.4574 52 1 -0.2563 6.9238 1.3762 53 1 1.3122 6.3097 1.9506 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847006967.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:50 Heat of formation + Delta-G solvation = -114.853964 kcal Electronic energy + Delta-G solvation = -31697.697288 eV Core-core repulsion = 27569.754587 eV Total energy + Delta-G solvation = -4127.942700 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.10558 -40.88890 -38.90238 -38.21332 -36.86667 -35.38757 -34.94070 -33.98536 -33.48579 -29.62563 -28.36812 -28.29669 -28.00328 -27.58290 -26.64285 -23.72433 -23.02717 -22.58119 -21.32999 -20.90574 -20.31893 -19.14598 -18.61433 -17.86586 -17.82067 -17.15238 -16.87232 -16.65536 -16.30741 -15.97351 -15.64946 -15.51874 -15.25693 -14.99869 -14.82189 -14.47185 -14.37411 -14.06091 -13.77259 -13.51887 -13.43727 -13.32196 -13.17608 -13.10371 -12.95772 -12.91130 -12.85588 -12.83858 -12.79009 -12.50735 -12.34772 -12.30350 -12.19312 -12.02033 -11.86323 -11.48389 -11.39358 -11.09544 -11.08200 -10.85482 -10.46993 -10.13615 -9.84757 -9.69793 -8.11185 -6.23673 0.97815 1.39382 1.43596 1.52236 1.59382 1.69908 2.33621 2.42235 2.80455 3.17642 3.46574 3.68275 3.75868 3.80091 3.84747 3.95346 3.97419 4.17195 4.26355 4.38128 4.44402 4.54956 4.57258 4.58883 4.62156 4.66183 4.72638 4.74582 4.76620 4.84620 4.85724 4.88797 4.93327 5.00867 5.02349 5.05037 5.08795 5.13008 5.27998 5.28865 5.29406 5.35444 5.38117 5.46674 5.56822 5.61782 5.68161 5.78025 6.22845 6.36416 6.69110 6.84735 7.20819 7.30270 7.46257 8.96272 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013305 B = 0.003001 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.990245 B = 9326.809475 C =10161.646990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 C 0.145 3.855 4 H 0.118 0.882 5 C 0.494 3.506 6 O -0.581 6.581 7 N -0.691 5.691 8 C 0.182 3.818 9 C 0.004 3.996 10 C -0.503 4.503 11 H 0.065 0.935 12 C 0.025 3.975 13 N -0.908 5.908 14 Si 0.945 3.055 15 H -0.260 1.260 16 H -0.291 1.291 17 H -0.284 1.284 18 C -0.171 4.171 19 C -0.161 4.161 20 N -0.575 5.575 21 C 0.089 3.911 22 C 0.651 3.349 23 O -0.592 6.592 24 O -0.362 6.362 25 C 0.122 3.878 26 C -0.176 4.176 27 C -0.133 4.133 28 C -0.183 4.183 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.411 0.589 35 H 0.024 0.976 36 H 0.041 0.959 37 H 0.258 0.742 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.046 0.954 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.067 0.933 46 H 0.091 0.909 47 H 0.060 0.940 48 H 0.064 0.936 49 H 0.103 0.897 50 H 0.075 0.925 51 H 0.055 0.945 52 H 0.094 0.906 53 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.914 -1.656 13.858 23.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.161 4.161 3 C 0.038 3.962 4 H 0.136 0.864 5 C 0.279 3.721 6 O -0.462 6.462 7 N -0.341 5.341 8 C 0.058 3.942 9 C 0.003 3.997 10 C -0.541 4.541 11 H 0.083 0.917 12 C -0.176 4.176 13 N -0.545 5.545 14 Si 0.772 3.228 15 H -0.183 1.183 16 H -0.218 1.218 17 H -0.210 1.210 18 C -0.208 4.208 19 C -0.199 4.199 20 N -0.314 5.314 21 C -0.053 4.053 22 C 0.407 3.593 23 O -0.483 6.483 24 O -0.276 6.276 25 C 0.086 3.914 26 C -0.233 4.233 27 C -0.190 4.190 28 C -0.240 4.240 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.117 0.883 33 H 0.103 0.897 34 H 0.247 0.753 35 H 0.042 0.958 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.109 0.891 44 H 0.106 0.894 45 H 0.086 0.914 46 H 0.109 0.891 47 H 0.079 0.921 48 H 0.083 0.917 49 H 0.122 0.878 50 H 0.094 0.906 51 H 0.074 0.926 52 H 0.113 0.887 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.394 -1.022 14.150 23.229 hybrid contribution 0.561 0.843 -1.471 1.785 sum -17.833 -0.180 12.680 21.882 Atomic orbital electron populations 1.21651 0.93428 1.02918 1.01656 1.21903 0.98045 0.91188 1.04943 1.21057 0.89868 0.97469 0.87759 0.86422 1.21376 0.91179 0.77652 0.81866 1.90643 1.66469 1.47084 1.41968 1.45829 1.08120 1.58199 1.21986 1.20548 0.79105 0.98658 0.95891 1.19030 0.98179 0.89625 0.92823 1.20730 1.07035 1.20231 1.06114 0.91671 1.25683 0.94632 0.97189 1.00105 1.70102 1.18954 1.25489 1.39989 0.85703 0.78458 0.77738 0.80942 1.18340 1.21778 1.20990 1.23018 1.01327 0.94762 1.01728 1.22430 0.91148 1.06440 0.99913 1.46281 1.49966 1.26844 1.08307 1.21835 1.00202 1.00215 0.83065 1.18058 0.78524 0.80127 0.82616 1.90877 1.60009 1.66060 1.31338 1.86312 1.65620 1.43678 1.32011 1.22462 0.88831 0.81216 0.98879 1.22448 0.95733 1.03505 1.01664 1.21868 1.03054 1.02209 0.91869 1.22493 1.01157 0.99362 1.00970 0.93554 0.92900 0.90039 0.88304 0.89670 0.75304 0.95780 0.94106 0.93344 0.88855 0.89485 0.91991 0.91151 0.93510 0.89065 0.89386 0.91352 0.89062 0.92062 0.91697 0.87828 0.90604 0.92551 0.88723 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.80 71.98 0.71 -1.74 16 2 C -0.12 -2.45 5.30 30.59 0.16 -2.29 16 3 C 0.15 4.15 2.45 44.24 0.11 4.26 16 4 H 0.12 3.67 6.90 -2.39 -0.02 3.65 16 5 C 0.49 18.02 7.05 87.66 0.62 18.64 16 6 O -0.58 -25.43 14.73 -3.05 -0.04 -25.48 16 7 N -0.69 -25.71 5.34 -463.05 -2.47 -28.18 16 8 C 0.18 8.18 5.50 86.38 0.48 8.65 16 9 C 0.00 0.19 1.38 -52.93 -0.07 0.12 16 10 C -0.50 -25.45 8.63 25.60 0.22 -25.23 16 11 H 0.07 3.17 7.82 -2.91 -0.02 3.15 16 12 C 0.02 1.31 5.39 84.65 0.46 1.76 16 13 N -0.91 -51.71 12.91 21.45 0.28 -51.43 16 14 Si 0.95 42.71 29.55 68.60 2.03 44.74 16 15 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 16 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 17 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 18 C -0.17 -6.46 9.96 30.62 0.30 -6.15 16 19 C -0.16 -7.17 9.42 30.62 0.29 -6.88 16 20 N -0.58 -16.42 1.99 -957.19 -1.90 -18.32 16 21 C 0.09 2.11 9.25 127.77 1.18 3.30 16 22 C 0.65 20.02 7.70 129.79 1.00 21.02 16 23 O -0.59 -20.61 11.21 19.81 0.22 -20.38 16 24 O -0.36 -9.57 8.71 -55.50 -0.48 -10.06 16 25 C 0.12 2.58 1.13 -10.79 -0.01 2.56 16 26 C -0.18 -3.38 8.37 71.99 0.60 -2.78 16 27 C -0.13 -1.82 8.85 71.98 0.64 -1.18 16 28 C -0.18 -4.26 8.37 71.98 0.60 -3.66 16 29 H 0.05 0.88 7.75 -2.38 -0.02 0.86 16 30 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.10 1.78 7.43 -2.38 -0.02 1.76 16 33 H 0.08 1.54 6.47 -2.39 -0.02 1.52 16 34 H 0.41 13.51 7.73 -92.71 -0.72 12.80 16 35 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.04 1.78 8.09 -2.39 -0.02 1.76 16 37 H 0.26 14.23 8.32 -92.71 -0.77 13.45 16 38 H 0.09 3.03 8.14 -2.38 -0.02 3.01 16 39 H 0.09 3.16 8.14 -2.38 -0.02 3.14 16 40 H 0.06 3.00 8.14 -2.38 -0.02 2.98 16 41 H 0.07 3.00 8.14 -2.38 -0.02 2.98 16 42 H 0.05 1.35 7.21 -2.38 -0.02 1.33 16 43 H 0.09 1.78 7.37 -2.39 -0.02 1.76 16 44 H 0.09 1.74 6.34 -2.39 -0.02 1.72 16 45 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.06 1.55 5.88 -2.39 -0.01 1.54 16 48 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.10 0.92 8.14 -2.39 -0.02 0.91 16 50 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 51 H 0.06 1.71 5.88 -2.39 -0.01 1.69 16 52 H 0.09 1.64 8.14 -2.39 -0.02 1.63 16 53 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -68.44 421.48 5.08 -63.36 By element: Atomic # 1 Polarization: 35.16 SS G_CDS: 0.17 Total: 35.34 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 7.28 Total: 10.41 kcal Atomic # 7 Polarization: -93.84 SS G_CDS: -4.10 Total: -97.93 kcal Atomic # 8 Polarization: -55.61 SS G_CDS: -0.31 Total: -55.92 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -68.44 5.08 -63.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847006967.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.490 kcal (2) G-P(sol) polarization free energy of solvation -68.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds