Wall clock time and date at job start Sat Apr 11 2020 06:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34234 * 117.00012 * 2 1 4 4 O 1.20827 * 119.99766 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00169 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47373 * 180.02562 * 5 3 2 7 7 N 1.46498 * 109.47431 * 179.97438 * 6 5 3 8 8 C 1.36940 * 120.00212 * 269.99855 * 7 6 5 9 9 H 1.08002 * 119.99781 * 334.86639 * 8 7 6 10 10 C 1.38807 * 120.00089 * 154.86221 * 8 7 6 11 11 N 1.31618 * 120.00044 * 0.25340 * 10 8 7 12 12 Si 1.86796 * 120.00009 * 180.25414 * 10 8 7 13 13 H 1.48495 * 109.47219 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47185 * 120.00062 * 12 10 8 15 15 H 1.48507 * 109.47170 * 240.00022 * 12 10 8 16 16 C 1.46503 * 119.99997 * 89.99752 * 7 6 5 17 17 C 1.50699 * 109.47176 * 274.21656 * 16 7 6 18 18 O 1.21284 * 119.99900 * 359.97438 * 17 16 7 19 19 N 1.34777 * 119.99918 * 180.02562 * 17 16 7 20 20 C 1.46490 * 120.00013 * 359.97438 * 19 17 16 21 21 C 1.53006 * 109.47130 * 120.00078 * 20 19 17 22 22 C 1.52998 * 109.47239 * 240.00289 * 20 19 17 23 23 C 1.46504 * 119.99600 * 179.97438 * 19 17 16 24 24 C 1.54966 * 110.92541 * 306.53717 * 23 19 17 25 25 C 1.54269 * 104.15703 * 156.29687 * 24 23 19 26 26 C 1.53869 * 106.64199 * 336.44649 * 25 24 23 27 27 C 1.54265 * 106.59943 * 359.97438 * 26 25 24 28 28 H 1.08994 * 109.46988 * 59.99700 * 1 2 3 29 29 H 1.08997 * 109.46647 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47047 * 300.00030 * 1 2 3 31 31 H 1.09000 * 109.47612 * 59.99941 * 5 3 2 32 32 H 1.09006 * 109.46995 * 299.99858 * 5 3 2 33 33 H 1.09004 * 109.47311 * 59.99655 * 6 5 3 34 34 H 1.08997 * 109.46775 * 300.00059 * 6 5 3 35 35 H 0.97002 * 119.99970 * 180.02562 * 11 10 8 36 36 H 1.09001 * 109.47292 * 154.21240 * 16 7 6 37 37 H 1.09000 * 109.47085 * 34.21240 * 16 7 6 38 38 H 1.09003 * 109.47504 * 0.02562 * 20 19 17 39 39 H 1.09004 * 109.46659 * 60.00398 * 21 20 19 40 40 H 1.09000 * 109.46853 * 179.97438 * 21 20 19 41 41 H 1.08997 * 109.47113 * 300.00029 * 21 20 19 42 42 H 1.08994 * 109.47707 * 59.99720 * 22 20 19 43 43 H 1.08999 * 109.47519 * 180.02562 * 22 20 19 44 44 H 1.09005 * 109.47001 * 299.99525 * 22 20 19 45 45 H 1.09005 * 110.66714 * 183.23322 * 23 19 17 46 46 H 1.09002 * 110.47510 * 37.64461 * 24 23 19 47 47 H 1.08991 * 110.53052 * 274.97800 * 24 23 19 48 48 H 1.08999 * 110.02801 * 217.13799 * 25 24 23 49 49 H 1.09002 * 110.02747 * 95.75729 * 25 24 23 50 50 H 1.09003 * 110.03149 * 119.25829 * 26 25 24 51 51 H 1.08999 * 110.03278 * 240.64447 * 26 25 24 52 52 H 1.09004 * 110.48904 * 142.28567 * 27 26 25 53 53 H 1.09002 * 110.48782 * 264.93303 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8188 0.0002 8 6 6.1469 2.8541 1.1862 9 1 5.6634 3.2261 2.0774 10 6 7.4613 2.4117 1.2429 11 7 8.0521 1.9629 0.1557 12 14 8.3918 2.4532 2.8621 13 1 7.5099 2.9968 3.9259 14 1 8.8144 1.0767 3.2256 15 1 9.5906 3.3184 2.7221 16 6 6.1946 2.8578 -1.2685 17 6 6.4293 1.4515 -1.7564 18 8 6.0257 0.5093 -1.1080 19 7 7.0886 1.2406 -2.9129 20 6 7.5766 2.3786 -3.6958 21 6 9.0973 2.2858 -3.8371 22 6 6.9331 2.3562 -5.0837 23 6 7.3172 -0.1266 -3.3869 24 6 8.0018 -0.9845 -2.2929 25 6 7.6265 -2.4349 -2.6609 26 6 6.3372 -2.3578 -3.4971 27 6 5.9726 -0.8629 -3.6081 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.9558 0.7810 -0.8908 32 1 3.9564 0.7806 0.8892 33 1 3.6107 3.2357 0.8906 34 1 3.6100 3.2367 -0.8893 35 1 8.9706 1.6534 0.1954 36 1 7.1529 3.3557 -1.1203 37 1 5.6108 3.4062 -2.0078 38 1 7.3152 3.3074 -3.1887 39 1 9.3590 1.3570 -4.3441 40 1 9.4602 3.1323 -4.4200 41 1 9.5557 2.3018 -2.8484 42 1 5.8498 2.4223 -4.9831 43 1 7.2964 3.2027 -5.6664 44 1 7.1949 1.4275 -5.5907 45 1 7.9105 -0.1226 -4.3013 46 1 7.6123 -0.7278 -1.3078 47 1 9.0831 -0.8508 -2.3233 48 1 7.4503 -3.0160 -1.7557 49 1 8.4251 -2.8899 -3.2469 50 1 6.5101 -2.7746 -4.4893 51 1 5.5355 -2.9022 -2.9982 52 1 5.5739 -0.6399 -4.5978 53 1 5.2549 -0.5869 -2.8356 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879474180.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:18 Heat of formation + Delta-G solvation = -113.270005 kcal Electronic energy + Delta-G solvation = -33202.023710 eV Core-core repulsion = 29074.149695 eV Total energy + Delta-G solvation = -4127.874015 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.44540 -40.91716 -38.40980 -37.54651 -36.87939 -36.53160 -33.86637 -31.99643 -31.67689 -29.61844 -29.47609 -28.50245 -27.84572 -27.43045 -25.92246 -23.34686 -22.36285 -22.05630 -21.35998 -21.02891 -19.37344 -18.79777 -18.29397 -17.75945 -17.53816 -17.33192 -16.88819 -16.68786 -15.96098 -15.75216 -15.40352 -15.02422 -14.91566 -14.69931 -14.54462 -14.34271 -14.19301 -14.08675 -13.66262 -13.49383 -13.48383 -13.24809 -12.95114 -12.94616 -12.85273 -12.72682 -12.45941 -12.30485 -12.20125 -12.03544 -11.97247 -11.94479 -11.82651 -11.81390 -11.77917 -11.60595 -11.55218 -11.51470 -11.42108 -11.06703 -10.65933 -9.75313 -8.98712 -8.64859 -7.80664 -5.23827 1.20254 1.45406 1.50630 1.56871 1.85726 2.49361 2.51127 2.76335 3.41374 3.64430 3.87844 3.89066 3.99890 4.10101 4.19928 4.26517 4.31459 4.32133 4.33756 4.41206 4.46361 4.52164 4.62211 4.67968 4.70900 4.72504 4.80968 4.81961 4.88533 4.89691 4.92542 4.99187 5.05009 5.07388 5.14842 5.16049 5.23349 5.26524 5.28498 5.37717 5.43297 5.46409 5.48375 5.55736 5.58967 5.68999 5.73233 6.34813 6.39838 6.77345 7.07603 7.26494 7.83634 8.22100 8.33382 9.22635 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007434 B = 0.005666 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3765.796535 B = 4940.265593 C = 6712.686624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.372 6.372 3 C 0.470 3.530 4 O -0.538 6.538 5 C -0.114 4.114 6 C 0.170 3.830 7 N -0.583 5.583 8 C -0.264 4.264 9 H 0.065 0.935 10 C -0.025 4.025 11 N -0.898 5.898 12 Si 0.958 3.042 13 H -0.276 1.276 14 H -0.305 1.305 15 H -0.290 1.290 16 C 0.166 3.834 17 C 0.539 3.461 18 O -0.554 6.554 19 N -0.612 5.612 20 C 0.129 3.871 21 C -0.149 4.149 22 C -0.150 4.150 23 C 0.158 3.842 24 C -0.136 4.136 25 C -0.114 4.114 26 C -0.110 4.110 27 C -0.129 4.129 28 H 0.063 0.937 29 H 0.130 0.870 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.047 0.953 34 H 0.054 0.946 35 H 0.244 0.756 36 H 0.089 0.911 37 H 0.045 0.955 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.033 0.967 42 H 0.049 0.951 43 H 0.083 0.917 44 H 0.062 0.938 45 H 0.099 0.901 46 H 0.059 0.941 47 H 0.043 0.957 48 H 0.044 0.956 49 H 0.076 0.924 50 H 0.083 0.917 51 H 0.053 0.947 52 H 0.072 0.928 53 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.542 -3.855 -12.607 13.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.289 6.289 3 C 0.315 3.685 4 O -0.428 6.428 5 C -0.155 4.155 6 C 0.043 3.957 7 N -0.302 5.302 8 C -0.394 4.394 9 H 0.083 0.917 10 C -0.222 4.222 11 N -0.543 5.543 12 Si 0.789 3.211 13 H -0.201 1.201 14 H -0.233 1.233 15 H -0.216 1.216 16 C 0.036 3.964 17 C 0.328 3.672 18 O -0.432 6.432 19 N -0.347 5.347 20 C 0.025 3.975 21 C -0.207 4.207 22 C -0.208 4.208 23 C 0.054 3.946 24 C -0.175 4.175 25 C -0.152 4.152 26 C -0.148 4.148 27 C -0.168 4.168 28 H 0.082 0.918 29 H 0.148 0.852 30 H 0.080 0.920 31 H 0.119 0.881 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.107 0.893 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.053 0.947 42 H 0.068 0.932 43 H 0.101 0.899 44 H 0.081 0.919 45 H 0.117 0.883 46 H 0.078 0.922 47 H 0.062 0.938 48 H 0.063 0.937 49 H 0.094 0.906 50 H 0.102 0.898 51 H 0.072 0.928 52 H 0.090 0.910 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.828 -4.061 -12.231 13.444 hybrid contribution 0.681 -0.200 1.475 1.637 sum -3.148 -4.260 -10.756 11.989 Atomic orbital electron populations 1.23539 0.75104 1.05529 1.02527 1.86578 1.25062 1.33459 1.83790 1.24420 0.92544 0.80994 0.70581 1.90574 1.67898 1.36983 1.47376 1.22257 0.84531 1.03342 1.05361 1.20675 0.83736 0.91245 1.00041 1.43905 1.00332 1.83765 1.02206 1.19345 0.95437 1.35833 0.88792 0.91709 1.25498 0.98949 0.98650 0.99129 1.69801 1.11832 1.46185 1.26454 0.85349 0.78495 0.76026 0.81238 1.20088 1.23252 1.21644 1.20655 0.97288 0.92630 0.85789 1.21470 0.75003 0.92918 0.77766 1.90391 1.52369 1.45054 1.55354 1.48074 1.58039 1.05553 1.23010 1.21153 0.94342 0.89226 0.92733 1.22046 0.95030 1.02490 1.01158 1.22105 1.00444 1.03072 0.95215 1.21754 0.95462 0.81414 0.96007 1.22650 0.98422 0.95290 1.01135 1.21989 0.98064 0.95873 0.99259 1.21968 0.96824 0.95743 1.00278 1.22622 0.97841 0.95431 1.00901 0.91780 0.85197 0.92016 0.88054 0.90030 0.93450 0.92765 0.94572 0.89265 0.93694 0.90368 0.92283 0.90096 0.94732 0.93172 0.89858 0.91907 0.88335 0.92187 0.93770 0.93704 0.90552 0.89808 0.92800 0.90952 0.93286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.80 16 2 O -0.37 -12.41 10.57 -51.46 -0.54 -12.95 16 3 C 0.47 17.79 7.96 71.23 0.57 18.36 16 4 O -0.54 -21.60 15.73 21.96 0.35 -21.26 16 5 C -0.11 -4.78 5.30 29.84 0.16 -4.62 16 6 C 0.17 7.36 5.00 86.38 0.43 7.80 16 7 N -0.58 -28.16 2.14 -706.34 -1.51 -29.67 16 8 C -0.26 -14.03 9.67 84.03 0.81 -13.21 16 9 H 0.07 3.46 7.82 -2.91 -0.02 3.44 16 10 C -0.03 -1.34 5.30 84.86 0.45 -0.89 16 11 N -0.90 -47.68 8.44 21.65 0.18 -47.50 16 12 Si 0.96 44.86 29.55 68.60 2.03 46.89 16 13 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 14 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 15 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 16 C 0.17 7.35 3.74 85.63 0.32 7.67 16 17 C 0.54 23.20 4.88 87.66 0.43 23.63 16 18 O -0.55 -27.16 9.18 -3.04 -0.03 -27.19 16 19 N -0.61 -21.21 2.43 -766.79 -1.87 -23.08 16 20 C 0.13 3.62 3.12 44.99 0.14 3.76 16 21 C -0.15 -3.83 9.19 71.98 0.66 -3.17 16 22 C -0.15 -3.13 9.19 71.98 0.66 -2.47 16 23 C 0.16 4.94 2.43 46.31 0.11 5.05 16 24 C -0.14 -4.92 6.18 31.70 0.20 -4.72 16 25 C -0.11 -3.32 6.80 31.32 0.21 -3.11 16 26 C -0.11 -2.91 6.80 31.32 0.21 -2.70 16 27 C -0.13 -3.90 6.22 31.67 0.20 -3.70 16 28 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 29 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.06 1.41 8.13 -2.39 -0.02 1.39 16 31 H 0.10 4.50 5.91 -2.39 -0.01 4.48 16 32 H 0.08 3.75 8.14 -2.38 -0.02 3.73 16 33 H 0.05 2.09 7.99 -2.38 -0.02 2.07 16 34 H 0.05 2.20 7.89 -2.39 -0.02 2.18 16 35 H 0.24 13.14 8.31 -92.71 -0.77 12.37 16 36 H 0.09 4.33 6.07 -2.39 -0.01 4.32 16 37 H 0.05 1.78 7.60 -2.39 -0.02 1.76 16 38 H 0.08 2.38 5.77 -2.39 -0.01 2.36 16 39 H 0.06 1.39 7.01 -2.38 -0.02 1.37 16 40 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.06 1.20 7.15 -2.38 -0.02 1.19 16 45 H 0.10 2.58 6.21 -2.38 -0.01 2.56 16 46 H 0.06 2.83 5.64 -2.39 -0.01 2.82 16 47 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 50 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 51 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 52 H 0.07 1.84 8.14 -2.38 -0.02 1.83 16 53 H 0.05 1.86 6.18 -2.39 -0.01 1.84 16 Total: -1.00 -64.03 405.20 6.24 -57.79 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: 0.88 Total: 27.50 kcal Atomic # 6 Polarization: 22.71 SS G_CDS: 6.76 Total: 29.46 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -3.20 Total: -100.24 kcal Atomic # 8 Polarization: -61.17 SS G_CDS: -0.23 Total: -61.40 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -64.03 6.24 -57.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879474180.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.485 kcal (2) G-P(sol) polarization free energy of solvation -64.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds