Wall clock time and date at job start Sat Apr 11 2020 06:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47015 * 2 1 4 4 H 1.08997 * 109.47069 * 306.18053 * 3 2 1 5 5 O 1.42907 * 109.47364 * 66.18077 * 3 2 1 6 6 C 1.42896 * 113.99856 * 256.89163 * 5 3 2 7 7 C 1.50702 * 109.47231 * 186.17870 * 3 2 1 8 8 O 1.21280 * 120.00532 * 255.41934 * 7 3 2 9 9 N 1.34779 * 119.99788 * 75.41710 * 7 3 2 10 10 C 1.47152 * 120.98704 * 355.71827 * 9 7 3 11 11 C 1.53307 * 108.36989 * 230.57645 * 10 9 7 12 12 O 1.42962 * 109.23524 * 307.65336 * 11 10 9 13 13 C 1.42901 * 114.20463 * 62.48836 * 12 11 10 14 14 C 1.52957 * 109.56568 * 177.74923 * 13 12 11 15 15 C 1.52991 * 109.51353 * 299.57524 * 14 13 12 16 16 C 1.53018 * 109.46171 * 300.05684 * 15 14 13 17 17 N 1.46493 * 109.47380 * 180.02562 * 16 15 14 18 18 C 1.36932 * 120.00401 * 85.02870 * 17 16 15 19 19 H 1.08004 * 120.00099 * 359.97438 * 18 17 16 20 20 C 1.38818 * 120.00423 * 179.97438 * 18 17 16 21 21 N 1.31611 * 119.99808 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00137 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46582 * 60.00022 * 22 20 18 24 24 H 1.48498 * 109.46886 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47085 * 300.00261 * 22 20 18 26 26 C 1.52995 * 109.44517 * 60.06223 * 16 15 14 27 27 C 1.52940 * 109.58886 * 57.50273 * 13 12 11 28 28 C 1.47154 * 120.98864 * 175.70063 * 9 7 3 29 29 H 1.08996 * 109.47891 * 300.80398 * 1 2 3 30 30 H 1.09001 * 109.47259 * 60.81205 * 1 2 3 31 31 H 1.09005 * 109.47370 * 180.80468 * 1 2 3 32 32 H 1.08994 * 109.47173 * 239.99351 * 2 1 3 33 33 H 1.09001 * 109.46595 * 119.99712 * 2 1 3 34 34 H 1.09006 * 109.46962 * 64.78402 * 6 5 3 35 35 H 1.09003 * 109.47312 * 184.78080 * 6 5 3 36 36 H 1.09001 * 109.47284 * 304.78061 * 6 5 3 37 37 H 1.09000 * 109.68596 * 110.86080 * 10 9 7 38 38 H 1.08995 * 109.69130 * 350.29900 * 10 9 7 39 39 H 1.09004 * 109.50754 * 67.58156 * 11 10 9 40 40 H 1.09000 * 109.51129 * 187.72125 * 11 10 9 41 41 H 1.09007 * 109.46720 * 59.58832 * 14 13 12 42 42 H 1.09008 * 109.46451 * 179.55711 * 14 13 12 43 43 H 1.09003 * 109.47624 * 180.02562 * 15 14 13 44 44 H 1.09000 * 109.47782 * 60.05399 * 15 14 13 45 45 H 1.09003 * 109.47276 * 300.07261 * 16 15 14 46 46 H 0.97006 * 119.99748 * 265.02084 * 17 16 15 47 47 H 0.96998 * 120.00527 * 180.02562 * 21 20 18 48 48 H 1.08998 * 109.47431 * 179.97438 * 26 16 15 49 49 H 1.09002 * 109.47007 * 59.94767 * 26 16 15 50 50 H 1.09004 * 109.46756 * 180.44012 * 27 13 12 51 51 H 1.08996 * 109.46644 * 300.41560 * 27 13 12 52 52 H 1.09001 * 109.67893 * 9.79288 * 28 9 7 53 53 H 1.09008 * 109.67216 * 249.26029 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5891 1.9872 -0.8295 5 8 1.6857 2.0730 1.2326 6 6 0.5757 2.9670 1.1301 7 6 3.5392 1.4453 -0.1529 8 8 4.2461 1.6742 0.8056 9 7 4.0944 1.1933 -1.3549 10 6 3.2628 0.8213 -2.5106 11 6 3.8505 -0.4468 -3.1404 12 8 5.2415 -0.2429 -3.3996 13 6 6.0270 -0.0062 -2.2295 14 6 7.4982 0.1411 -2.6212 15 6 7.9792 -1.1461 -3.2938 16 6 7.8242 -2.3178 -2.3219 17 7 8.2853 -3.5504 -2.9655 18 6 9.6145 -3.8789 -2.9426 19 1 10.3230 -3.2291 -2.4505 20 6 10.0513 -5.0472 -3.5520 21 7 9.1881 -5.8389 -4.1521 22 14 11.8647 -5.4949 -3.5214 23 1 12.3164 -5.6339 -2.1136 24 1 12.0691 -6.7807 -4.2357 25 1 12.6497 -4.4263 -4.1899 26 6 6.3518 -2.4659 -1.9334 27 6 5.8699 -1.1791 -1.2606 28 6 5.5501 1.2825 -1.5507 29 1 -0.3635 0.5262 0.8826 30 1 -0.3634 0.5012 -0.8972 31 1 -0.3634 -1.0276 0.0144 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 -0.3206 2.4048 0.8677 35 1 0.4233 3.4682 2.0860 36 1 0.7775 3.7099 0.3584 37 1 3.2670 1.6300 -3.2414 38 1 2.2418 0.6286 -2.1814 39 1 3.7270 -1.2848 -2.4543 40 1 3.3336 -0.6619 -4.0756 41 1 7.6079 0.9757 -3.3138 42 1 8.0947 0.3293 -1.7285 43 1 9.0278 -1.0407 -3.5723 44 1 7.3837 -1.3339 -4.1872 45 1 8.4188 -2.1295 -1.4279 46 1 7.6490 -4.1340 -3.4077 47 1 9.4932 -6.6554 -4.5776 48 1 6.2408 -3.3008 -1.2415 49 1 5.7572 -2.6531 -2.8276 50 1 6.4635 -0.9929 -0.3655 51 1 4.8206 -1.2844 -0.9849 52 1 6.0442 1.3936 -0.5855 53 1 5.7835 2.1388 -2.1837 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093391549.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:58 Heat of formation + Delta-G solvation = -134.847425 kcal Electronic energy + Delta-G solvation = -32099.534478 eV Core-core repulsion = 27970.724796 eV Total energy + Delta-G solvation = -4128.809682 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.07022 -40.56384 -38.72264 -38.04628 -36.05613 -35.35380 -34.31924 -33.26278 -31.87589 -31.08645 -29.88060 -28.89628 -27.32314 -26.15170 -25.05715 -24.40511 -23.59376 -22.94137 -21.79295 -20.67670 -20.14690 -19.13196 -18.72910 -17.97063 -17.27718 -17.09508 -16.78460 -16.64805 -16.32052 -16.04280 -15.95452 -15.52276 -15.39614 -15.21303 -14.96138 -14.68542 -14.44012 -14.23622 -14.17749 -13.82393 -13.46139 -13.24907 -13.20105 -13.13627 -12.95710 -12.89512 -12.74121 -12.66317 -12.54438 -12.31282 -12.22291 -12.17488 -11.99471 -11.94109 -11.75890 -11.55324 -11.46770 -11.25966 -10.94548 -10.93823 -10.69218 -10.39181 -9.55621 -8.97992 -7.92560 -5.20447 1.43170 1.46437 1.49551 1.55461 1.61787 2.56761 2.75967 2.83567 3.33713 3.39969 3.53643 3.68609 3.75910 3.78069 3.84194 3.90109 4.00561 4.12032 4.24679 4.27172 4.30057 4.33596 4.38650 4.46913 4.49827 4.51896 4.55654 4.59633 4.60581 4.67794 4.74288 4.76794 4.83450 4.86779 4.90175 4.99598 5.02810 5.05588 5.09700 5.15323 5.21602 5.29682 5.32669 5.37860 5.49336 5.53744 5.70042 6.01180 6.27741 6.29077 6.31500 7.02934 7.35284 8.12669 8.36298 9.30988 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023464 B = 0.002456 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.046184 B =11398.750078 C =11612.164723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.140 4.140 3 C 0.079 3.921 4 H 0.119 0.881 5 O -0.391 6.391 6 C 0.017 3.983 7 C 0.505 3.495 8 O -0.571 6.571 9 N -0.608 5.608 10 C 0.066 3.934 11 C 0.033 3.967 12 O -0.374 6.374 13 C 0.120 3.880 14 C -0.095 4.095 15 C -0.116 4.116 16 C 0.174 3.826 17 N -0.738 5.738 18 C -0.237 4.237 19 H 0.072 0.928 20 C -0.078 4.078 21 N -0.970 5.970 22 Si 0.971 3.029 23 H -0.279 1.279 24 H -0.295 1.295 25 H -0.278 1.278 26 C -0.105 4.105 27 C -0.124 4.124 28 C 0.094 3.906 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.054 0.946 37 H 0.099 0.901 38 H 0.122 0.878 39 H 0.054 0.946 40 H 0.130 0.870 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.041 0.959 44 H 0.050 0.950 45 H 0.034 0.966 46 H 0.371 0.629 47 H 0.250 0.750 48 H 0.048 0.952 49 H 0.060 0.940 50 H 0.065 0.935 51 H 0.070 0.930 52 H 0.085 0.915 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.215 19.702 4.248 30.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C 0.018 3.982 4 H 0.136 0.864 5 O -0.309 6.309 6 C -0.079 4.079 7 C 0.294 3.706 8 O -0.449 6.449 9 N -0.342 5.342 10 C -0.055 4.055 11 C -0.044 4.044 12 O -0.293 6.293 13 C 0.080 3.920 14 C -0.134 4.134 15 C -0.156 4.156 16 C 0.066 3.934 17 N -0.377 5.377 18 C -0.369 4.369 19 H 0.090 0.910 20 C -0.270 4.270 21 N -0.621 5.621 22 Si 0.800 3.200 23 H -0.206 1.206 24 H -0.221 1.221 25 H -0.204 1.204 26 C -0.143 4.143 27 C -0.163 4.163 28 C -0.029 4.029 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.073 0.927 37 H 0.117 0.883 38 H 0.140 0.860 39 H 0.073 0.927 40 H 0.147 0.853 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.052 0.948 46 H 0.203 0.797 47 H 0.059 0.941 48 H 0.066 0.934 49 H 0.079 0.921 50 H 0.084 0.916 51 H 0.088 0.912 52 H 0.103 0.897 53 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -22.496 19.803 4.810 30.354 hybrid contribution 0.900 -0.854 -0.079 1.243 sum -21.596 18.948 4.732 29.118 Atomic orbital electron populations 1.21830 0.92614 1.03280 1.02973 1.22042 0.98842 0.93443 1.03441 1.22143 0.89671 0.96863 0.89522 0.86382 1.88018 1.51691 1.61052 1.30179 1.23239 0.88299 0.92568 1.03748 1.21334 0.91654 0.75743 0.81886 1.90692 1.64667 1.49935 1.39590 1.48182 1.07575 1.68538 1.09951 1.22869 0.95961 0.98841 0.87849 1.23231 0.82066 0.96101 1.02971 1.88042 1.18974 1.91926 1.30308 1.21642 0.92093 0.92633 0.85664 1.21464 0.92130 0.98167 1.01612 1.21902 0.99571 0.94871 0.99246 1.20429 0.93381 0.86106 0.93510 1.42617 1.05437 1.23499 1.66122 1.19570 0.86003 1.03495 1.27830 0.90958 1.25536 1.01761 0.97995 1.01695 1.69807 1.34613 1.14699 1.43016 0.85246 0.80337 0.76867 0.77553 1.20575 1.22138 1.20417 1.21534 0.95915 0.96901 0.99938 1.21922 1.01464 0.94546 0.98320 1.22243 0.80615 0.98018 1.01999 0.92339 0.90311 0.91371 0.88940 0.92579 0.91368 0.88864 0.92746 0.88328 0.85987 0.92740 0.85251 0.89920 0.89990 0.94026 0.93098 0.94814 0.79743 0.94106 0.93362 0.92125 0.91641 0.91193 0.89672 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.25 71.98 0.67 -0.52 16 2 C -0.14 -1.81 5.19 30.59 0.16 -1.65 16 3 C 0.08 1.24 1.81 29.85 0.05 1.30 16 4 H 0.12 1.01 6.84 -2.39 -0.02 0.99 16 5 O -0.39 -7.84 9.67 -130.41 -1.26 -9.10 16 6 C 0.02 0.18 10.45 113.37 1.18 1.37 16 7 C 0.51 11.73 7.02 87.66 0.62 12.34 16 8 O -0.57 -19.14 16.04 15.54 0.25 -18.89 16 9 N -0.61 -11.54 2.55 -817.38 -2.08 -13.62 16 10 C 0.07 0.76 5.85 86.36 0.51 1.27 16 11 C 0.03 0.53 6.60 72.08 0.48 1.01 16 12 O -0.37 -9.00 8.93 -148.98 -1.33 -10.33 16 13 C 0.12 2.97 0.68 -10.74 -0.01 2.96 16 14 C -0.10 -2.59 4.93 30.58 0.15 -2.44 16 15 C -0.12 -4.22 5.36 30.60 0.16 -4.05 16 16 C 0.17 7.14 2.77 45.00 0.12 7.26 16 17 N -0.74 -38.53 5.12 -322.92 -1.65 -40.18 16 18 C -0.24 -13.54 9.93 84.04 0.83 -12.70 16 19 H 0.07 3.99 7.83 -2.91 -0.02 3.96 16 20 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 21 N -0.97 -60.57 13.06 21.65 0.28 -60.29 16 22 Si 0.97 47.19 29.55 68.60 2.03 49.22 16 23 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 24 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 25 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 26 C -0.10 -3.61 5.25 30.59 0.16 -3.45 16 27 C -0.12 -3.46 4.19 30.58 0.13 -3.33 16 28 C 0.09 2.07 5.30 86.34 0.46 2.53 16 29 H 0.06 0.53 6.18 -2.39 -0.01 0.51 16 30 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.09 0.94 6.08 -2.39 -0.01 0.93 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 0.43 6.09 -2.38 -0.01 0.42 16 35 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.05 0.44 8.03 -2.39 -0.02 0.42 16 37 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.12 0.71 4.47 -2.39 -0.01 0.69 16 39 H 0.05 0.95 6.26 -2.38 -0.01 0.94 16 40 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 42 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 43 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.05 1.98 7.70 -2.39 -0.02 1.96 16 45 H 0.03 1.44 8.08 -2.39 -0.02 1.42 16 46 H 0.37 20.81 7.80 -92.70 -0.72 20.09 16 47 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 48 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 49 H 0.06 2.12 7.70 -2.39 -0.02 2.10 16 50 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 51 H 0.07 1.80 6.11 -2.39 -0.01 1.78 16 52 H 0.08 2.19 7.06 -2.39 -0.02 2.18 16 53 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -77.67 398.59 2.55 -75.12 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: 0.18 Total: 30.30 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 6.14 Total: -2.22 kcal Atomic # 7 Polarization: -110.64 SS G_CDS: -3.45 Total: -114.09 kcal Atomic # 8 Polarization: -35.98 SS G_CDS: -2.34 Total: -38.32 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -77.67 2.55 -75.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093391549.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.729 kcal (2) G-P(sol) polarization free energy of solvation -77.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds