Wall clock time and date at job start Sat Apr 11 2020 06:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47122 * 2 1 4 4 H 1.08995 * 109.47458 * 55.00316 * 3 2 1 5 5 O 1.42905 * 109.47413 * 294.99902 * 3 2 1 6 6 C 1.42898 * 113.99792 * 149.99992 * 5 3 2 7 7 C 1.50707 * 109.46940 * 175.00393 * 3 2 1 8 8 O 1.21279 * 120.00255 * 115.00337 * 7 3 2 9 9 N 1.34781 * 119.99624 * 295.00042 * 7 3 2 10 10 C 1.46499 * 119.99819 * 180.02562 * 9 7 3 11 11 H 1.09004 * 109.49999 * 35.06720 * 10 9 7 12 12 C 1.53179 * 109.49773 * 275.00099 * 10 9 7 13 13 N 1.46928 * 108.81441 * 185.39669 * 12 10 9 14 14 C 1.36944 * 120.64337 * 233.62756 * 13 12 10 15 15 H 1.07995 * 120.00424 * 152.18873 * 14 13 12 16 16 C 1.38815 * 119.99608 * 332.20213 * 14 13 12 17 17 N 1.31617 * 120.00102 * 143.77829 * 16 14 13 18 18 Si 1.86799 * 119.99678 * 323.76891 * 16 14 13 19 19 H 1.48503 * 109.47161 * 270.00345 * 18 16 14 20 20 H 1.48498 * 109.47322 * 30.00703 * 18 16 14 21 21 H 1.48500 * 109.47175 * 150.00742 * 18 16 14 22 22 C 1.46949 * 118.71998 * 53.89309 * 13 12 10 23 23 C 1.53555 * 108.51331 * 306.18068 * 22 13 12 24 24 C 1.53065 * 109.45819 * 174.84898 * 23 22 13 25 25 C 1.53123 * 109.16586 * 176.84917 * 24 23 22 26 26 O 1.42895 * 109.40606 * 302.52690 * 25 24 23 27 27 C 1.42898 * 114.12769 * 61.18944 * 26 25 24 28 28 C 1.53086 * 109.62591 * 294.61854 * 23 22 13 29 29 C 1.52947 * 109.40408 * 54.76501 * 23 22 13 30 30 H 1.08997 * 109.47046 * 59.99823 * 1 2 3 31 31 H 1.08996 * 109.47430 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46917 * 300.00150 * 1 2 3 33 33 H 1.09009 * 109.46679 * 240.00168 * 2 1 3 34 34 H 1.08997 * 109.47046 * 120.00177 * 2 1 3 35 35 H 1.09004 * 109.47411 * 300.00307 * 6 5 3 36 36 H 1.09004 * 109.47212 * 60.00618 * 6 5 3 37 37 H 1.09005 * 109.46836 * 180.02562 * 6 5 3 38 38 H 0.96999 * 120.00180 * 359.97438 * 9 7 3 39 39 H 1.09007 * 109.58499 * 65.59732 * 12 10 9 40 40 H 1.09003 * 109.69202 * 305.25862 * 12 10 9 41 41 H 0.96995 * 120.00049 * 354.91185 * 17 16 14 42 42 H 1.09006 * 109.58624 * 66.01439 * 22 13 12 43 43 H 1.09004 * 109.59228 * 186.44236 * 22 13 12 44 44 H 1.08997 * 109.52520 * 296.75196 * 24 23 22 45 45 H 1.08999 * 109.52208 * 56.94367 * 24 23 22 46 46 H 1.09002 * 109.47522 * 182.54745 * 25 24 23 47 47 H 1.08998 * 109.48032 * 62.51284 * 25 24 23 48 48 H 1.09008 * 109.48971 * 178.81848 * 27 26 25 49 49 H 1.09004 * 109.48750 * 58.77303 * 27 26 25 50 50 H 1.09002 * 109.52221 * 303.13725 * 28 23 22 51 51 H 1.09004 * 109.52848 * 63.33209 * 28 23 22 52 52 H 1.09003 * 109.46045 * 178.59937 * 29 23 22 53 53 H 1.09004 * 109.46048 * 58.63962 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 8 1.6620 2.0814 -1.2211 6 6 1.4560 3.4903 -1.1002 7 6 3.5420 1.4442 0.1237 8 8 4.2251 1.8610 -0.7876 9 7 4.1261 0.9826 1.2473 10 6 5.5861 0.9848 1.3678 11 1 5.9917 1.8607 0.8614 12 6 6.1540 -0.2852 0.7267 13 7 7.6024 -0.3315 0.9692 14 6 8.4797 -0.4832 -0.0713 15 1 9.4810 -0.0855 0.0043 16 6 8.0820 -1.1478 -1.2232 17 7 8.5143 -0.7435 -2.3988 18 14 6.9333 -2.6161 -1.1048 19 1 7.7325 -3.8595 -0.9615 20 1 6.0478 -2.4579 0.0767 21 1 6.1066 -2.6983 -2.3356 22 6 8.0911 -0.2179 2.3503 23 6 7.5005 1.0553 2.9733 24 6 7.8914 1.1284 4.4514 25 6 7.3663 2.4380 5.0462 26 8 7.8924 3.5407 4.3051 27 6 7.5169 3.5501 2.9263 28 6 8.0486 2.2857 2.2459 29 6 5.9766 1.0229 2.8472 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 0.6619 3.6808 -0.3782 36 1 2.3770 3.9644 -0.7609 37 1 1.1716 3.9003 -2.0693 38 1 3.5797 0.6496 1.9763 39 1 5.9636 -0.2693 -0.3465 40 1 5.6815 -1.1625 1.1685 41 1 9.0504 0.0618 -2.4677 42 1 7.7741 -1.0895 2.9230 43 1 9.1793 -0.1550 2.3490 44 1 7.4547 0.2848 4.9859 45 1 8.9771 1.0963 4.5430 46 1 7.6807 2.5163 6.0869 47 1 6.2776 2.4505 4.9931 48 1 7.9395 4.4296 2.4403 49 1 6.4302 3.5769 2.8455 50 1 9.1377 2.2793 2.2892 51 1 7.7243 2.2683 1.2053 52 1 5.5547 1.9145 3.3113 53 1 5.5895 0.1354 3.3479 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099567229.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:15 Heat of formation + Delta-G solvation = -134.856857 kcal Electronic energy + Delta-G solvation = -32947.492586 eV Core-core repulsion = 28818.682495 eV Total energy + Delta-G solvation = -4128.810091 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.78561 -40.86387 -38.88733 -38.16708 -35.97111 -35.43842 -34.49412 -33.35643 -32.09533 -31.24556 -28.81389 -28.63182 -27.03255 -26.96594 -24.70823 -24.48379 -23.66034 -22.78426 -22.04933 -21.46247 -19.59709 -19.39902 -18.38617 -18.14001 -17.40882 -16.99915 -16.73575 -16.53791 -16.37021 -16.01457 -15.77621 -15.73327 -15.56838 -15.27929 -15.15321 -14.98351 -14.93060 -14.45138 -14.13033 -13.92215 -13.66077 -13.44864 -13.37795 -13.05223 -12.97224 -12.85936 -12.62422 -12.47657 -12.27328 -12.23178 -12.05325 -11.89857 -11.88599 -11.77022 -11.72676 -11.57743 -11.35957 -11.16185 -11.03766 -10.61002 -10.34307 -10.26736 -10.10206 -9.00842 -8.60425 -5.46043 1.41533 1.47570 1.55504 1.64952 2.02948 2.56560 2.78260 2.92824 2.98337 3.41943 3.59894 3.65432 3.80618 3.83317 3.88764 3.93969 4.09110 4.12482 4.20517 4.23621 4.30534 4.34926 4.41571 4.43870 4.50049 4.50686 4.57873 4.68616 4.70982 4.79589 4.80554 4.82858 4.86246 4.87229 4.93909 4.98879 5.06264 5.09814 5.11399 5.18896 5.19529 5.22477 5.39529 5.44388 5.47255 5.52465 5.81616 6.02500 6.22644 6.28683 6.60103 6.86412 7.29954 7.62054 8.09036 8.74839 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008054 B = 0.005314 C = 0.003773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3475.823096 B = 5268.005567 C = 7420.008678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.119 4.119 3 C 0.081 3.919 4 H 0.127 0.873 5 O -0.385 6.385 6 C 0.026 3.974 7 C 0.476 3.524 8 O -0.580 6.580 9 N -0.705 5.705 10 C 0.133 3.867 11 H 0.052 0.948 12 C 0.141 3.859 13 N -0.603 5.603 14 C -0.343 4.343 15 H 0.027 0.973 16 C -0.050 4.050 17 N -0.936 5.936 18 Si 1.058 2.942 19 H -0.289 1.289 20 H -0.233 1.233 21 H -0.311 1.311 22 C 0.152 3.848 23 C -0.065 4.065 24 C -0.134 4.134 25 C 0.057 3.943 26 O -0.400 6.400 27 C 0.071 3.929 28 C -0.133 4.133 29 C -0.100 4.100 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.048 0.952 34 H 0.105 0.895 35 H 0.076 0.924 36 H 0.026 0.974 37 H 0.094 0.906 38 H 0.418 0.582 39 H 0.021 0.979 40 H 0.047 0.953 41 H 0.250 0.750 42 H 0.047 0.953 43 H 0.040 0.960 44 H 0.100 0.900 45 H 0.062 0.938 46 H 0.113 0.887 47 H 0.068 0.932 48 H 0.087 0.913 49 H 0.058 0.942 50 H 0.045 0.955 51 H 0.045 0.955 52 H 0.087 0.913 53 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.986 5.281 19.319 26.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.157 4.157 3 C 0.020 3.980 4 H 0.144 0.856 5 O -0.303 6.303 6 C -0.070 4.070 7 C 0.262 3.738 8 O -0.459 6.459 9 N -0.360 5.360 10 C 0.026 3.974 11 H 0.070 0.930 12 C 0.014 3.986 13 N -0.327 5.327 14 C -0.472 4.472 15 H 0.045 0.955 16 C -0.248 4.248 17 N -0.576 5.576 18 Si 0.884 3.116 19 H -0.216 1.216 20 H -0.157 1.157 21 H -0.239 1.239 22 C 0.027 3.973 23 C -0.067 4.067 24 C -0.172 4.172 25 C -0.019 4.019 26 O -0.319 6.319 27 C -0.006 4.006 28 C -0.171 4.171 29 C -0.137 4.137 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.123 0.877 35 H 0.094 0.906 36 H 0.045 0.955 37 H 0.113 0.887 38 H 0.256 0.744 39 H 0.040 0.960 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.119 0.881 45 H 0.081 0.919 46 H 0.131 0.869 47 H 0.086 0.914 48 H 0.105 0.895 49 H 0.076 0.924 50 H 0.064 0.936 51 H 0.064 0.936 52 H 0.105 0.895 53 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -18.120 4.461 17.694 25.716 hybrid contribution 1.652 1.128 -0.235 2.014 sum -16.468 5.589 17.458 24.642 Atomic orbital electron populations 1.21678 0.92438 1.02902 1.02799 1.21690 0.98833 0.91625 1.03582 1.22334 0.87869 0.97863 0.89942 0.85603 1.87980 1.87869 1.22288 1.32118 1.22999 0.99855 0.80113 1.04062 1.22329 0.92843 0.76711 0.81870 1.90770 1.66645 1.48022 1.40445 1.45936 1.07078 1.64306 1.18694 1.21427 0.79536 0.98455 0.97951 0.92998 1.21651 0.83983 0.95637 0.97333 1.44214 1.01025 1.84919 1.02571 1.19786 0.96420 1.34817 0.96171 0.95521 1.27164 1.02603 1.03805 0.91200 1.70993 1.36416 1.25064 1.25127 0.84118 0.75798 0.75273 0.76443 1.21635 1.15687 1.23880 1.21299 0.96845 0.95110 0.84076 1.20969 0.95056 0.94903 0.95795 1.22137 1.01911 0.99800 0.93378 1.22832 0.98517 0.84601 0.95968 1.87877 1.75425 1.47668 1.20917 1.22493 0.99051 0.97182 0.81843 1.22032 0.99883 0.95843 0.99332 1.21786 0.94924 1.04125 0.92876 0.93090 0.91269 0.90371 0.93322 0.87674 0.90584 0.95539 0.88738 0.74378 0.96028 0.93502 0.94086 0.93535 0.94128 0.88115 0.91877 0.86908 0.91413 0.89476 0.92390 0.93649 0.93611 0.89509 0.88644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.81 71.98 0.71 -1.20 16 2 C -0.12 -2.26 5.61 30.59 0.17 -2.08 16 3 C 0.08 1.83 2.52 29.85 0.08 1.91 16 4 H 0.13 1.72 7.79 -2.39 -0.02 1.70 16 5 O -0.39 -10.73 9.42 -129.99 -1.22 -11.96 16 6 C 0.03 0.54 10.81 113.37 1.23 1.76 16 7 C 0.48 15.31 7.10 87.66 0.62 15.93 16 8 O -0.58 -26.89 16.17 15.96 0.26 -26.63 16 9 N -0.71 -18.45 4.98 -442.15 -2.20 -20.65 16 10 C 0.13 4.48 2.27 45.07 0.10 4.58 16 11 H 0.05 2.21 5.72 -2.38 -0.01 2.20 16 12 C 0.14 6.06 3.94 86.36 0.34 6.40 16 13 N -0.60 -28.43 2.21 -698.32 -1.54 -29.98 16 14 C -0.34 -20.13 9.71 84.03 0.82 -19.31 16 15 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 16 C -0.05 -3.07 4.81 84.86 0.41 -2.66 16 17 N -0.94 -63.11 13.70 21.65 0.30 -62.82 16 18 Si 1.06 54.22 27.00 68.60 1.85 56.07 16 19 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 20 H -0.23 -10.25 4.73 99.48 0.47 -9.78 16 21 H -0.31 -16.74 7.11 99.48 0.71 -16.03 16 22 C 0.15 5.60 5.24 86.48 0.45 6.05 16 23 C -0.07 -1.85 0.52 -51.96 -0.03 -1.88 16 24 C -0.13 -2.79 4.92 30.66 0.15 -2.64 16 25 C 0.06 1.04 6.57 72.02 0.47 1.51 16 26 O -0.40 -10.27 10.76 -148.98 -1.60 -11.87 16 27 C 0.07 1.94 6.57 72.02 0.47 2.42 16 28 C -0.13 -4.50 4.49 30.66 0.14 -4.36 16 29 C -0.10 -2.40 3.63 30.59 0.11 -2.28 16 30 H 0.05 0.83 7.82 -2.39 -0.02 0.81 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.10 1.43 7.77 -2.39 -0.02 1.41 16 35 H 0.08 1.01 8.09 -2.38 -0.02 0.99 16 36 H 0.03 0.64 8.14 -2.38 -0.02 0.62 16 37 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 38 H 0.42 6.56 8.31 -92.71 -0.77 5.79 16 39 H 0.02 1.14 5.81 -2.38 -0.01 1.13 16 40 H 0.05 1.85 6.59 -2.39 -0.02 1.83 16 41 H 0.25 17.09 8.73 -92.71 -0.81 16.28 16 42 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 43 H 0.04 1.64 7.93 -2.38 -0.02 1.62 16 44 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.07 1.01 6.59 -2.39 -0.02 0.99 16 48 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 49 H 0.06 1.45 6.64 -2.38 -0.02 1.44 16 50 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 51 H 0.05 1.94 5.92 -2.39 -0.01 1.93 16 52 H 0.09 1.69 5.03 -2.39 -0.01 1.68 16 53 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -86.59 396.21 1.93 -84.66 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -0.15 Total: 19.04 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 6.24 Total: 4.13 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -3.45 Total: -113.44 kcal Atomic # 8 Polarization: -47.89 SS G_CDS: -2.57 Total: -50.46 kcal Atomic # 14 Polarization: 54.22 SS G_CDS: 1.85 Total: 56.07 kcal Total: -86.59 1.93 -84.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099567229.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.194 kcal (2) G-P(sol) polarization free energy of solvation -86.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds