Wall clock time and date at job start Sat Apr 11 2020 06:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47526 * 2 1 4 4 H 1.09004 * 109.47071 * 54.99439 * 3 2 1 5 5 O 1.42898 * 109.47133 * 294.99862 * 3 2 1 6 6 C 1.42896 * 113.99992 * 149.99953 * 5 3 2 7 7 C 1.50703 * 109.47302 * 174.99482 * 3 2 1 8 8 O 1.21280 * 119.99568 * 114.99662 * 7 3 2 9 9 N 1.34769 * 120.00349 * 295.00297 * 7 3 2 10 10 C 1.46495 * 120.00268 * 179.97438 * 9 7 3 11 11 H 1.08997 * 109.50073 * 324.99798 * 10 9 7 12 12 C 1.53195 * 109.50022 * 85.06418 * 10 9 7 13 13 N 1.46922 * 108.81431 * 174.60547 * 12 10 9 14 14 C 1.36937 * 120.64273 * 126.38473 * 13 12 10 15 15 H 1.07993 * 120.00009 * 207.65471 * 14 13 12 16 16 C 1.38819 * 119.99783 * 27.65194 * 14 13 12 17 17 N 1.31617 * 119.99639 * 17.38801 * 16 14 13 18 18 Si 1.86791 * 119.99691 * 197.38894 * 16 14 13 19 19 H 1.48498 * 109.47523 * 0.02562 * 18 16 14 20 20 H 1.48509 * 109.47042 * 120.00143 * 18 16 14 21 21 H 1.48502 * 109.46938 * 239.99552 * 18 16 14 22 22 C 1.46947 * 118.71656 * 306.36565 * 13 12 10 23 23 C 1.53104 * 108.76227 * 53.50428 * 22 13 12 24 24 C 1.53070 * 109.48562 * 185.28113 * 23 22 13 25 25 C 1.53109 * 109.16618 * 297.01042 * 24 23 22 26 26 O 1.42901 * 109.40560 * 302.52263 * 25 24 23 27 27 C 1.42912 * 114.13276 * 61.17677 * 26 25 24 28 28 C 1.53088 * 109.46611 * 65.60196 * 23 22 13 29 29 C 1.52932 * 109.51531 * 305.49341 * 23 22 13 30 30 H 1.09001 * 109.46938 * 300.00761 * 1 2 3 31 31 H 1.09002 * 109.46817 * 59.99762 * 1 2 3 32 32 H 1.08993 * 109.47702 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46817 * 120.00238 * 2 1 3 34 34 H 1.09001 * 109.46938 * 239.99239 * 2 1 3 35 35 H 1.09000 * 109.47535 * 299.99684 * 6 5 3 36 36 H 1.08999 * 109.47349 * 59.99970 * 6 5 3 37 37 H 1.09005 * 109.47280 * 180.02562 * 6 5 3 38 38 H 0.97006 * 119.99818 * 359.97438 * 9 7 3 39 39 H 1.09000 * 109.57923 * 294.40920 * 12 10 9 40 40 H 1.09004 * 109.57543 * 54.67380 * 12 10 9 41 41 H 0.97002 * 119.99773 * 180.02562 * 17 16 14 42 42 H 1.08991 * 109.59085 * 173.29048 * 22 13 12 43 43 H 1.09001 * 109.58827 * 293.58148 * 22 13 12 44 44 H 1.09003 * 109.52328 * 56.91820 * 24 23 22 45 45 H 1.08999 * 109.52131 * 177.10186 * 24 23 22 46 46 H 1.09000 * 109.48601 * 182.54769 * 25 24 23 47 47 H 1.09003 * 109.48583 * 62.49945 * 25 24 23 48 48 H 1.09007 * 109.48408 * 178.83584 * 27 26 25 49 49 H 1.09000 * 109.48712 * 58.78610 * 27 26 25 50 50 H 1.08992 * 109.52343 * 182.88782 * 28 23 22 51 51 H 1.08996 * 109.52514 * 303.02507 * 28 23 22 52 52 H 1.09002 * 109.43272 * 301.17454 * 29 23 22 53 53 H 1.09008 * 109.48413 * 181.21917 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6621 2.0813 -1.2210 6 6 1.4562 3.4902 -1.1003 7 6 3.5420 1.4441 0.1240 8 8 4.2251 1.8608 -0.7874 9 7 4.1260 0.9826 1.2474 10 6 5.5860 0.9838 1.3677 11 1 6.0314 0.7761 0.3948 12 6 6.0572 2.3546 1.8636 13 7 7.5058 2.2998 2.1025 14 6 8.3442 3.2129 1.5207 15 1 9.3704 2.9483 1.3131 16 6 7.8748 4.4789 1.1978 17 7 6.7625 4.9265 1.7405 18 14 8.8221 5.5468 -0.0070 19 1 10.0292 4.8175 -0.4720 20 1 7.9576 5.8655 -1.1717 21 1 9.2320 6.8063 0.6645 22 6 8.0377 1.2463 2.9781 23 6 7.5428 -0.1112 2.4718 24 6 7.9774 -1.2089 3.4462 25 6 9.5068 -1.2711 3.4837 26 8 10.0048 -1.5071 2.1652 27 6 9.6701 -0.4863 1.2227 28 6 8.1472 -0.3930 1.0938 29 6 6.0172 -0.0923 2.3671 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8933 -0.5140 -0.8899 35 1 0.6620 3.6808 -0.3784 36 1 2.3771 3.9643 -0.7609 37 1 1.1718 3.9002 -2.0694 38 1 3.5796 0.6496 1.9765 39 1 5.8397 3.1105 1.1090 40 1 5.5413 2.6047 2.7906 41 1 6.4343 5.8109 1.5146 42 1 9.1271 1.2692 2.9572 43 1 7.6883 1.4078 3.9979 44 1 7.5975 -0.9828 4.4425 45 1 7.5819 -2.1686 3.1137 46 1 9.8217 -2.0811 4.1415 47 1 9.9001 -0.3255 3.8569 48 1 10.1027 -0.7312 0.2526 49 1 10.0652 0.4696 1.5664 50 1 7.7557 -1.3350 0.7100 51 1 7.8875 0.4151 0.4100 52 1 5.5893 0.1279 3.3451 53 1 5.6640 -1.0660 2.0273 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099567230.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:18 Heat of formation + Delta-G solvation = -137.640515 kcal Electronic energy + Delta-G solvation = -32719.598628 eV Core-core repulsion = 28590.667829 eV Total energy + Delta-G solvation = -4128.930799 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.63433 -40.84420 -38.84764 -38.04047 -35.88818 -35.38098 -34.46612 -32.80921 -31.94688 -31.30427 -28.76346 -28.25690 -27.37872 -26.98535 -24.68052 -24.41649 -23.62299 -23.05045 -21.79909 -21.37435 -19.44402 -18.72520 -18.41886 -18.03656 -17.23747 -16.97475 -16.74528 -16.68580 -16.16466 -15.99026 -15.71272 -15.65233 -15.39869 -15.30093 -14.98346 -14.94507 -14.55975 -14.30014 -14.14073 -13.76362 -13.50810 -13.39114 -13.08372 -12.97772 -12.96449 -12.84723 -12.51525 -12.49659 -12.33870 -12.26366 -12.14010 -12.04383 -12.02882 -11.86481 -11.72728 -11.66687 -11.56302 -11.10276 -10.87789 -10.57633 -10.37781 -10.17793 -10.06628 -8.69845 -7.92043 -5.35784 1.36242 1.41511 1.48654 1.61726 2.07995 2.45485 2.78051 3.03268 3.24926 3.57319 3.67728 3.75924 3.87054 3.88096 3.90305 4.01606 4.21061 4.23935 4.34014 4.34772 4.38865 4.40067 4.41391 4.47154 4.52422 4.58689 4.60116 4.76431 4.77054 4.81499 4.87335 4.88822 4.91174 4.97750 5.06602 5.10069 5.12510 5.18436 5.22520 5.27814 5.33146 5.42453 5.44819 5.46181 5.52350 5.59557 5.76416 5.97854 6.32998 6.33702 6.64015 7.09724 7.33683 7.82717 8.31507 9.12703 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008880 B = 0.004672 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3152.549678 B = 5991.072026 C = 8383.182901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.110 4.110 3 C 0.077 3.923 4 H 0.110 0.890 5 O -0.378 6.378 6 C 0.027 3.973 7 C 0.478 3.522 8 O -0.581 6.581 9 N -0.705 5.705 10 C 0.130 3.870 11 H 0.054 0.946 12 C 0.180 3.820 13 N -0.598 5.598 14 C -0.253 4.253 15 H 0.066 0.934 16 C -0.046 4.046 17 N -0.928 5.928 18 Si 0.951 3.049 19 H -0.264 1.264 20 H -0.301 1.301 21 H -0.286 1.286 22 C 0.152 3.848 23 C -0.067 4.067 24 C -0.130 4.130 25 C 0.054 3.946 26 O -0.396 6.396 27 C 0.066 3.934 28 C -0.131 4.131 29 C -0.094 4.094 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.014 0.986 37 H 0.100 0.900 38 H 0.414 0.586 39 H 0.041 0.959 40 H 0.000 1.000 41 H 0.245 0.755 42 H 0.052 0.948 43 H 0.020 0.980 44 H 0.089 0.911 45 H 0.083 0.917 46 H 0.116 0.884 47 H 0.044 0.956 48 H 0.095 0.905 49 H 0.039 0.961 50 H 0.070 0.930 51 H 0.051 0.949 52 H 0.078 0.922 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.274 -14.711 4.358 18.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.148 4.148 3 C 0.016 3.984 4 H 0.127 0.873 5 O -0.295 6.295 6 C -0.069 4.069 7 C 0.265 3.735 8 O -0.460 6.460 9 N -0.358 5.358 10 C 0.024 3.976 11 H 0.072 0.928 12 C 0.053 3.947 13 N -0.321 5.321 14 C -0.383 4.383 15 H 0.084 0.916 16 C -0.242 4.242 17 N -0.574 5.574 18 Si 0.780 3.220 19 H -0.188 1.188 20 H -0.229 1.229 21 H -0.213 1.213 22 C 0.027 3.973 23 C -0.070 4.070 24 C -0.168 4.168 25 C -0.023 4.023 26 O -0.315 6.315 27 C -0.010 4.010 28 C -0.168 4.168 29 C -0.132 4.132 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.123 0.877 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.033 0.967 37 H 0.119 0.881 38 H 0.251 0.749 39 H 0.059 0.941 40 H 0.018 0.982 41 H 0.055 0.945 42 H 0.071 0.929 43 H 0.038 0.962 44 H 0.108 0.892 45 H 0.102 0.898 46 H 0.134 0.866 47 H 0.062 0.938 48 H 0.113 0.887 49 H 0.057 0.943 50 H 0.089 0.911 51 H 0.070 0.930 52 H 0.097 0.903 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.754 -14.509 3.462 17.822 hybrid contribution 0.303 1.938 -0.361 1.994 sum -9.451 -12.571 3.100 16.030 Atomic orbital electron populations 1.21700 0.92832 1.03026 1.02530 1.21628 0.98460 0.90728 1.03937 1.22355 0.88166 0.98342 0.89537 0.87280 1.87918 1.87898 1.21742 1.31959 1.22949 0.99362 0.80481 1.04078 1.22197 0.92692 0.76618 0.82002 1.90721 1.66600 1.47419 1.41271 1.45925 1.07480 1.64144 1.18300 1.21517 0.79411 0.97363 0.99293 0.92820 1.20766 0.83529 0.93763 0.96617 1.44084 1.02557 1.31970 1.53493 1.19416 0.94699 0.91482 1.32744 0.91632 1.25652 0.98992 0.97778 1.01792 1.70157 1.24967 1.17738 1.44583 0.85437 0.78474 0.79067 0.78980 1.18780 1.22902 1.21311 1.21200 0.97041 0.87185 0.91843 1.20915 0.94757 0.95739 0.95556 1.22119 0.96489 0.98280 0.99919 1.22778 0.93525 1.02036 0.83923 1.87843 1.76708 1.46801 1.20185 1.22506 0.94726 0.90718 0.93092 1.22028 0.96194 1.01109 0.97504 1.21649 0.95133 0.97686 0.98745 0.91251 0.93037 0.90700 0.87725 0.92052 0.90990 0.96672 0.88115 0.74936 0.94064 0.98245 0.94538 0.92940 0.96211 0.89205 0.89793 0.86586 0.93775 0.88737 0.94284 0.91107 0.93010 0.90346 0.89712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.81 71.98 0.71 -1.28 16 2 C -0.11 -2.00 5.61 30.59 0.17 -1.83 16 3 C 0.08 1.99 2.51 29.85 0.08 2.07 16 4 H 0.11 2.23 7.79 -2.38 -0.02 2.21 16 5 O -0.38 -11.42 9.42 -129.99 -1.22 -12.65 16 6 C 0.03 0.73 10.81 113.37 1.23 1.95 16 7 C 0.48 17.04 7.10 87.66 0.62 17.66 16 8 O -0.58 -28.23 16.17 15.96 0.26 -27.97 16 9 N -0.70 -21.67 4.98 -442.15 -2.20 -23.88 16 10 C 0.13 4.90 2.26 45.08 0.10 5.00 16 11 H 0.05 2.41 5.86 -2.39 -0.01 2.39 16 12 C 0.18 8.79 4.88 86.36 0.42 9.21 16 13 N -0.60 -29.53 2.39 -699.22 -1.67 -31.21 16 14 C -0.25 -14.11 9.59 84.04 0.81 -13.31 16 15 H 0.07 3.58 7.89 -2.91 -0.02 3.56 16 16 C -0.05 -2.70 4.91 84.86 0.42 -2.28 16 17 N -0.93 -56.86 11.19 21.65 0.24 -56.62 16 18 Si 0.95 47.55 29.59 68.60 2.03 49.57 16 19 H -0.26 -12.45 7.11 99.48 0.71 -11.75 16 20 H -0.30 -15.61 7.11 99.48 0.71 -14.90 16 21 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 22 C 0.15 5.92 4.61 86.33 0.40 6.32 16 23 C -0.07 -2.04 0.52 -52.12 -0.03 -2.06 16 24 C -0.13 -2.92 4.92 30.65 0.15 -2.77 16 25 C 0.05 1.27 6.57 72.02 0.47 1.74 16 26 O -0.40 -11.52 10.76 -148.98 -1.60 -13.12 16 27 C 0.07 2.08 6.57 72.02 0.47 2.56 16 28 C -0.13 -4.28 4.36 30.66 0.13 -4.15 16 29 C -0.09 -2.65 4.19 30.59 0.13 -2.52 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.85 7.82 -2.39 -0.02 0.83 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.10 1.37 7.77 -2.39 -0.02 1.35 16 34 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.07 1.41 8.08 -2.39 -0.02 1.39 16 36 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 38 H 0.41 8.81 8.31 -92.70 -0.77 8.04 16 39 H 0.04 2.46 6.03 -2.39 -0.01 2.45 16 40 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 41 H 0.25 14.74 8.31 -92.71 -0.77 13.96 16 42 H 0.05 2.08 4.84 -2.39 -0.01 2.06 16 43 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 47 H 0.04 1.13 6.74 -2.39 -0.02 1.11 16 48 H 0.09 2.75 8.14 -2.38 -0.02 2.73 16 49 H 0.04 1.38 6.48 -2.39 -0.02 1.37 16 50 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 51 H 0.05 2.11 6.10 -2.39 -0.01 2.10 16 52 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 53 H 0.08 1.94 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -78.50 401.07 2.23 -76.27 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.12 Total: 23.29 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 6.28 Total: 16.31 kcal Atomic # 7 Polarization: -108.07 SS G_CDS: -3.63 Total: -111.70 kcal Atomic # 8 Polarization: -51.17 SS G_CDS: -2.57 Total: -53.74 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.57 kcal Total: -78.50 2.23 -76.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099567230.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.370 kcal (2) G-P(sol) polarization free energy of solvation -78.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds