Wall clock time and date at job start Sat Apr 11 2020 06:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47143 * 2 1 4 4 H 1.08999 * 109.47335 * 305.00267 * 3 2 1 5 5 O 1.42907 * 109.47192 * 65.00008 * 3 2 1 6 6 C 1.42894 * 113.99946 * 270.00202 * 5 3 2 7 7 C 1.53000 * 109.47188 * 269.99507 * 6 5 3 8 8 C 1.53001 * 109.47309 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47158 * 60.00210 * 8 7 6 10 10 C 1.53009 * 109.47002 * 300.00026 * 9 8 7 11 11 C 1.53001 * 109.47185 * 59.99991 * 10 9 8 12 12 C 1.50698 * 109.47391 * 185.00110 * 3 2 1 13 13 O 1.21277 * 120.00092 * 245.00006 * 12 3 2 14 14 N 1.34777 * 119.99842 * 64.99796 * 12 3 2 15 15 C 1.46495 * 120.00234 * 180.02562 * 14 12 3 16 16 H 1.09000 * 110.91616 * 31.09979 * 15 14 12 17 17 C 1.54918 * 111.00632 * 267.20315 * 15 14 12 18 18 N 1.47425 * 104.82827 * 204.91527 * 17 15 14 19 19 C 1.36938 * 125.64463 * 204.10316 * 18 17 15 20 20 H 1.08003 * 119.99775 * 359.97438 * 19 18 17 21 21 C 1.38807 * 120.00396 * 179.97438 * 19 18 17 22 22 N 1.31622 * 119.99373 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00409 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46965 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47282 * 120.00199 * 23 21 19 26 26 H 1.48501 * 109.46887 * 239.99948 * 23 21 19 27 27 C 1.47015 * 108.70882 * 24.12597 * 18 17 15 28 28 C 1.54325 * 107.27065 * 358.94051 * 27 18 17 29 29 H 1.08999 * 110.87305 * 96.24314 * 28 27 18 30 30 O 1.42901 * 110.72114 * 219.44659 * 28 27 18 31 31 H 1.09002 * 109.46792 * 299.99962 * 1 2 3 32 32 H 1.08996 * 109.47039 * 59.99836 * 1 2 3 33 33 H 1.08995 * 109.47289 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.46965 * 240.00540 * 2 1 3 35 35 H 1.08996 * 109.47039 * 120.00164 * 2 1 3 36 36 H 1.08998 * 109.47500 * 30.00009 * 6 5 3 37 37 H 1.08998 * 109.47310 * 300.00618 * 7 6 5 38 38 H 1.09006 * 109.46826 * 60.00257 * 7 6 5 39 39 H 1.09003 * 109.46765 * 300.00298 * 8 7 6 40 40 H 1.09000 * 109.47040 * 180.02562 * 8 7 6 41 41 H 1.08997 * 109.47254 * 180.02562 * 9 8 7 42 42 H 1.08996 * 109.47359 * 59.99716 * 9 8 7 43 43 H 1.08996 * 109.46811 * 300.00026 * 10 9 8 44 44 H 1.08998 * 109.46625 * 179.97438 * 10 9 8 45 45 H 1.08991 * 109.47213 * 179.97438 * 11 10 9 46 46 H 1.09003 * 109.46765 * 59.99827 * 11 10 9 47 47 H 0.97000 * 120.00256 * 0.02562 * 14 12 3 48 48 H 1.08999 * 110.35942 * 323.74720 * 17 15 14 49 49 H 1.08996 * 110.36556 * 86.07552 * 17 15 14 50 50 H 0.97006 * 119.99857 * 179.97438 * 22 21 19 51 51 H 1.09000 * 109.88350 * 239.52260 * 27 18 17 52 52 H 1.08997 * 110.01690 * 118.42776 * 27 18 17 53 53 H 0.96698 * 113.99595 * 293.52017 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 8 1.6620 2.0814 1.2211 6 6 0.3928 2.7356 1.1660 7 6 0.5847 4.1836 0.7107 8 6 -0.7742 4.8843 0.6523 9 6 -1.4168 4.8672 2.0407 10 6 -1.6088 3.4192 2.4961 11 6 -0.2499 2.7185 2.5545 12 6 3.5419 1.4443 -0.1239 13 8 4.2250 1.8611 0.7875 14 7 4.1260 0.9828 -1.2474 15 6 5.5860 0.9841 -1.3677 16 1 6.0567 0.8466 -0.3942 17 6 6.0861 2.2831 -2.0477 18 7 7.3835 1.9201 -2.6464 19 6 8.3992 2.7909 -2.9383 20 1 8.2841 3.8443 -2.7293 21 6 9.5766 2.3199 -3.5027 22 7 9.7165 1.0363 -3.7578 23 14 10.9624 3.5078 -3.9002 24 1 10.5578 4.8852 -3.5208 25 1 12.1786 3.1216 -3.1406 26 1 11.2523 3.4608 -5.3559 27 6 7.4061 0.4686 -2.8787 28 6 6.0622 -0.0973 -2.3733 29 1 5.3516 -0.2010 -3.1932 30 8 6.2570 -1.3500 -1.7140 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.8934 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 -0.2539 2.2152 0.4596 37 1 1.2314 4.7040 1.4171 38 1 1.0429 4.1957 -0.2783 39 1 -1.4212 4.3639 -0.0539 40 1 -0.6375 5.9157 0.3275 41 1 -2.3851 5.3660 1.9991 42 1 -0.7699 5.3874 2.7470 43 1 -2.2557 2.8990 1.7898 44 1 -2.0662 3.4071 3.4854 45 1 -0.3865 1.6871 2.8793 46 1 0.3971 3.2388 3.2607 47 1 3.5796 0.6498 -1.9764 48 1 5.3865 2.5996 -2.8214 49 1 6.2173 3.0724 -1.3076 50 1 10.5392 0.7071 -4.1526 51 1 8.2298 0.0174 -2.3255 52 1 7.5180 0.2628 -3.9432 53 1 6.5549 -2.0601 -2.2989 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192961910.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:05 Heat of formation + Delta-G solvation = -149.044021 kcal Electronic energy + Delta-G solvation = -31146.217746 eV Core-core repulsion = 27016.792453 eV Total energy + Delta-G solvation = -4129.425292 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.41827 -40.26687 -39.30150 -37.53875 -36.69193 -35.67527 -34.25817 -33.45204 -31.73918 -30.89833 -30.30112 -29.07450 -27.75313 -26.18251 -23.57719 -23.25872 -23.11682 -22.36314 -21.99464 -21.55040 -20.69828 -19.17155 -18.56665 -18.13485 -18.05143 -17.30573 -16.65260 -16.52508 -16.12027 -15.86465 -15.57897 -15.47496 -15.11224 -14.91965 -14.80649 -14.64489 -14.49242 -14.23263 -13.92772 -13.79029 -13.56772 -13.33422 -13.18768 -13.14511 -13.10815 -13.00897 -12.79146 -12.75311 -12.62255 -12.14367 -12.07334 -12.01228 -11.91462 -11.72912 -11.56682 -11.48727 -11.46923 -11.10106 -11.02102 -10.80170 -10.74589 -10.30528 -10.18179 -8.99095 -7.90936 -5.28222 1.44055 1.45887 1.52393 1.56021 1.74705 2.45087 2.83664 3.11304 3.29968 3.52779 3.56121 3.75508 3.78640 3.84498 3.85541 3.98597 4.04216 4.06289 4.17407 4.25862 4.29513 4.32931 4.40037 4.42001 4.52702 4.53737 4.56892 4.58830 4.66929 4.78686 4.81883 4.94284 4.96439 5.02685 5.09920 5.12498 5.18461 5.24271 5.24910 5.30665 5.34661 5.37107 5.40437 5.42781 5.43324 5.52687 5.64887 6.11546 6.19583 6.54286 6.87028 7.02921 7.20951 7.66938 8.29244 9.18966 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016986 B = 0.002431 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.045403 B =11516.658960 C =12730.431973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.137 4.137 3 C 0.083 3.917 4 H 0.113 0.887 5 O -0.379 6.379 6 C 0.078 3.922 7 C -0.146 4.146 8 C -0.112 4.112 9 C -0.124 4.124 10 C -0.110 4.110 11 C -0.116 4.116 12 C 0.508 3.492 13 O -0.575 6.575 14 N -0.695 5.695 15 C 0.152 3.848 16 H 0.067 0.933 17 C 0.131 3.869 18 N -0.622 5.622 19 C -0.247 4.247 20 H 0.080 0.920 21 C -0.062 4.062 22 N -0.948 5.948 23 Si 0.981 3.019 24 H -0.268 1.268 25 H -0.292 1.292 26 H -0.285 1.285 27 C 0.161 3.839 28 C 0.093 3.907 29 H 0.100 0.900 30 O -0.569 6.569 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.058 0.942 36 H 0.095 0.905 37 H 0.046 0.954 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.052 0.948 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.050 0.950 47 H 0.418 0.582 48 H 0.047 0.953 49 H 0.029 0.971 50 H 0.250 0.750 51 H 0.019 0.981 52 H 0.029 0.971 53 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.964 -1.140 4.829 29.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.175 4.175 3 C 0.022 3.978 4 H 0.131 0.869 5 O -0.298 6.298 6 C 0.021 3.979 7 C -0.184 4.184 8 C -0.150 4.150 9 C -0.161 4.161 10 C -0.147 4.147 11 C -0.154 4.154 12 C 0.295 3.705 13 O -0.453 6.453 14 N -0.349 5.349 15 C 0.046 3.954 16 H 0.085 0.915 17 C 0.004 3.996 18 N -0.350 5.350 19 C -0.376 4.376 20 H 0.098 0.902 21 C -0.255 4.255 22 N -0.596 5.596 23 Si 0.809 3.191 24 H -0.193 1.193 25 H -0.220 1.220 26 H -0.212 1.212 27 C 0.035 3.965 28 C 0.032 3.968 29 H 0.117 0.883 30 O -0.377 6.377 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.077 0.923 36 H 0.113 0.887 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.071 0.929 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.069 0.931 47 H 0.256 0.744 48 H 0.065 0.935 49 H 0.047 0.953 50 H 0.059 0.941 51 H 0.037 0.963 52 H 0.047 0.953 53 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -28.379 -0.503 6.094 29.030 hybrid contribution 1.655 0.181 -0.994 1.940 sum -26.723 -0.322 5.100 27.207 Atomic orbital electron populations 1.21950 0.92921 1.03510 1.02819 1.22019 0.98628 0.93165 1.03732 1.22014 0.89084 0.96694 0.90044 0.86907 1.88073 1.38139 1.71017 1.32599 1.22630 0.84052 0.92025 0.99199 1.22104 0.98750 0.96550 1.01044 1.21484 0.94826 1.00639 0.98019 1.21600 1.01171 0.96975 0.96386 1.21496 0.95229 0.95392 1.02630 1.21602 0.96962 1.01600 0.95210 1.21242 0.91377 0.76311 0.81549 1.90713 1.66460 1.47311 1.40782 1.45574 1.06035 1.64504 1.18767 1.21726 0.80532 0.94548 0.98626 0.91469 1.21933 0.87579 0.95083 0.94962 1.44522 1.13472 1.04195 1.72808 1.19467 0.93491 0.90149 1.34469 0.90201 1.25659 1.00352 0.98095 1.01405 1.70135 1.26817 1.13177 1.49506 0.84977 0.78616 0.78277 0.77242 1.19282 1.21951 1.21205 1.21631 0.93335 0.83611 0.97909 1.23163 0.96488 0.83572 0.93536 0.88265 1.86443 1.90312 1.20142 1.40802 0.92085 0.90664 0.90845 0.88687 0.92347 0.88749 0.93500 0.92314 0.90320 0.91518 0.90266 0.92946 0.90270 0.90560 0.91037 0.93079 0.74369 0.93532 0.95255 0.94096 0.96295 0.95291 0.75324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 8.58 71.98 0.62 -1.04 16 2 C -0.14 -2.26 5.61 30.60 0.17 -2.09 16 3 C 0.08 1.81 2.64 29.85 0.08 1.89 16 4 H 0.11 1.79 7.62 -2.39 -0.02 1.77 16 5 O -0.38 -9.88 9.10 -129.99 -1.18 -11.06 16 6 C 0.08 1.38 1.38 30.60 0.04 1.43 16 7 C -0.15 -2.69 5.53 30.59 0.17 -2.52 16 8 C -0.11 -1.41 5.92 30.59 0.18 -1.22 16 9 C -0.12 -1.41 5.92 30.60 0.18 -1.23 16 10 C -0.11 -1.17 5.92 30.60 0.18 -0.99 16 11 C -0.12 -1.87 5.44 30.60 0.17 -1.71 16 12 C 0.51 16.15 7.18 87.66 0.63 16.78 16 13 O -0.57 -25.18 16.15 15.97 0.26 -24.92 16 14 N -0.70 -19.69 5.10 -435.97 -2.22 -21.91 16 15 C 0.15 5.81 3.15 46.39 0.15 5.96 16 16 H 0.07 3.13 7.54 -2.39 -0.02 3.11 16 17 C 0.13 5.72 6.93 86.86 0.60 6.32 16 18 N -0.62 -32.78 3.39 -692.00 -2.35 -35.13 16 19 C -0.25 -14.22 10.28 84.03 0.86 -13.36 16 20 H 0.08 4.47 7.83 -2.91 -0.02 4.44 16 21 C -0.06 -3.55 5.49 84.86 0.47 -3.09 16 22 N -0.95 -56.54 10.31 21.65 0.22 -56.31 16 23 Si 0.98 46.31 29.55 68.60 2.03 48.34 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 25 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 26 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 27 C 0.16 7.79 5.15 86.73 0.45 8.24 16 28 C 0.09 3.29 3.98 31.78 0.13 3.42 16 29 H 0.10 2.77 8.00 -2.39 -0.02 2.75 16 30 O -0.57 -18.90 13.39 -148.98 -1.99 -20.89 16 31 H 0.06 0.71 5.54 -2.39 -0.01 0.70 16 32 H 0.07 0.54 8.01 -2.39 -0.02 0.52 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.09 1.23 7.77 -2.38 -0.02 1.21 16 35 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.09 1.20 5.23 -2.39 -0.01 1.19 16 37 H 0.05 1.08 8.14 -2.39 -0.02 1.07 16 38 H 0.06 1.10 7.97 -2.38 -0.02 1.08 16 39 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.07 1.10 7.88 -2.39 -0.02 1.08 16 46 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.42 8.09 8.27 -92.71 -0.77 7.33 16 48 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 50 H 0.25 14.38 8.31 -92.70 -0.77 13.61 16 51 H 0.02 1.06 7.29 -2.39 -0.02 1.04 16 52 H 0.03 1.50 7.51 -2.39 -0.02 1.48 16 53 H 0.40 9.59 9.12 -74.06 -0.68 8.92 16 Total: -1.00 -79.91 408.99 -0.71 -80.62 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: -0.54 Total: 24.47 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 5.07 Total: 16.80 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -4.35 Total: -113.35 kcal Atomic # 8 Polarization: -53.96 SS G_CDS: -2.92 Total: -56.88 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -79.91 -0.71 -80.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192961910.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.422 kcal (2) G-P(sol) polarization free energy of solvation -79.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds