Wall clock time and date at job start Sat Apr 11 2020 06:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47132 * 2 1 4 4 H 1.09004 * 109.46955 * 53.65037 * 3 2 1 5 5 O 1.42900 * 109.47240 * 293.65656 * 3 2 1 6 6 C 1.42894 * 114.00360 * 155.50958 * 5 3 2 7 7 C 1.54266 * 110.03515 * 268.36561 * 6 5 3 8 8 C 1.54889 * 104.19475 * 217.10108 * 7 6 5 9 9 C 1.54896 * 102.74665 * 37.94501 * 8 7 6 10 10 C 1.53878 * 110.03123 * 151.19782 * 6 5 3 11 11 C 1.50697 * 109.47521 * 173.65009 * 3 2 1 12 12 O 1.21289 * 119.99723 * 119.99980 * 11 3 2 13 13 N 1.34778 * 120.00278 * 300.00143 * 11 3 2 14 14 C 1.46499 * 120.00195 * 179.97438 * 13 11 3 15 15 H 1.08998 * 110.63487 * 31.85948 * 14 13 11 16 16 C 1.54326 * 110.87169 * 268.61733 * 14 13 11 17 17 N 1.47029 * 107.26507 * 219.37033 * 16 14 13 18 18 C 1.36934 * 125.64885 * 178.97589 * 17 16 14 19 19 H 1.08010 * 119.99784 * 347.19811 * 18 17 16 20 20 C 1.38809 * 120.00571 * 167.19402 * 18 17 16 21 21 N 1.31619 * 119.99367 * 350.79693 * 20 18 17 22 22 Si 1.86793 * 120.00299 * 170.79649 * 20 18 17 23 23 H 1.48502 * 109.47251 * 94.93517 * 22 20 18 24 24 H 1.48499 * 109.47084 * 214.93201 * 22 20 18 25 25 H 1.48501 * 109.47271 * 334.93673 * 22 20 18 26 26 C 1.47524 * 108.71777 * 358.94005 * 17 16 14 27 27 C 1.54915 * 104.78287 * 24.12268 * 26 17 16 28 28 H 1.09000 * 111.00544 * 81.08612 * 27 26 17 29 29 O 1.42901 * 111.00539 * 204.90499 * 27 26 17 30 30 C 1.42904 * 113.99584 * 265.41740 * 29 27 26 31 31 H 1.08997 * 109.47039 * 58.49798 * 1 2 3 32 32 H 1.09005 * 109.46540 * 178.49206 * 1 2 3 33 33 H 1.09000 * 109.47124 * 298.49188 * 1 2 3 34 34 H 1.08999 * 109.47784 * 240.00471 * 2 1 3 35 35 H 1.09000 * 109.47522 * 119.99601 * 2 1 3 36 36 H 1.09003 * 110.01746 * 29.80819 * 6 5 3 37 37 H 1.08991 * 110.48680 * 335.78272 * 7 6 5 38 38 H 1.08999 * 110.48407 * 98.43162 * 7 6 5 39 39 H 1.08993 * 110.76332 * 279.63001 * 8 7 6 40 40 H 1.09001 * 110.75307 * 156.25738 * 8 7 6 41 41 H 1.09001 * 110.48421 * 203.37504 * 9 8 7 42 42 H 1.09004 * 110.59882 * 80.78946 * 9 8 7 43 43 H 1.09004 * 110.02906 * 238.57317 * 10 6 5 44 44 H 1.08993 * 110.03471 * 359.95309 * 10 6 5 45 45 H 0.96999 * 119.99830 * 359.97438 * 13 11 3 46 46 H 1.08998 * 109.88343 * 338.78672 * 16 14 13 47 47 H 1.09001 * 109.88380 * 99.95552 * 16 14 13 48 48 H 0.97000 * 120.00032 * 180.02562 * 21 20 18 49 49 H 1.09001 * 110.37495 * 265.30721 * 26 17 16 50 50 H 1.09005 * 110.41010 * 142.95045 * 26 17 16 51 51 H 1.08999 * 109.47126 * 179.97438 * 30 29 27 52 52 H 1.09001 * 109.47033 * 299.99426 * 30 29 27 53 53 H 1.08995 * 109.47505 * 59.99578 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5868 1.9881 0.8277 5 8 1.6891 2.0718 -1.2340 6 6 1.6022 3.4960 -1.1562 7 6 0.1571 3.9198 -0.8218 8 6 -0.0610 5.2112 -1.6488 9 6 0.6860 4.9013 -2.9698 10 6 1.9385 4.1201 -2.5220 11 6 3.5388 1.4455 0.1571 12 8 4.2377 1.9381 -0.7031 13 7 4.1025 0.9009 1.2535 14 6 5.5596 0.9034 1.4060 15 1 5.9937 1.7850 0.9345 16 6 6.1755 -0.3863 0.8237 17 7 7.2575 -0.8005 1.7289 18 6 8.0424 -1.9124 1.5783 19 1 7.7654 -2.6766 0.8670 20 6 9.1940 -2.0575 2.3395 21 7 9.6304 -1.0537 3.0705 22 14 10.1244 -3.6772 2.3265 23 1 11.2188 -3.6114 1.3250 24 1 10.6995 -3.9284 3.6724 25 1 9.1945 -4.7794 1.9719 26 6 7.3584 0.1805 2.8261 27 6 5.9548 0.8314 2.9046 28 1 5.2621 0.2004 3.4615 29 8 6.0275 2.1382 3.4784 30 6 5.7833 2.1692 4.8861 31 1 -0.3633 0.5370 -0.8762 32 1 -0.3632 -1.0274 -0.0270 33 1 -0.3633 0.4902 0.9032 34 1 1.8934 -0.5137 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.2874 3.8706 -0.3957 37 1 -0.5477 3.1470 -1.1283 38 1 0.0573 4.1277 0.2435 39 1 0.3826 6.0710 -1.1468 40 1 -1.1223 5.3762 -1.8346 41 1 0.9722 5.8254 -3.4721 42 1 0.0677 4.2877 -3.6251 43 1 2.7863 4.7981 -2.4240 44 1 2.1687 3.3367 -3.2439 45 1 3.5435 0.5074 1.9416 46 1 5.4175 -1.1677 0.7701 47 1 6.5784 -0.1889 -0.1697 48 1 10.4353 -1.1548 3.6022 49 1 8.1128 0.9324 2.5947 50 1 7.5968 -0.3213 3.7640 51 1 5.8571 3.1957 5.2451 52 1 4.7844 1.7835 5.0901 53 1 6.5224 1.5520 5.3968 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213507137.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:08 Heat of formation + Delta-G solvation = -135.783907 kcal Electronic energy + Delta-G solvation = -31346.844368 eV Core-core repulsion = 27217.994077 eV Total energy + Delta-G solvation = -4128.850291 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.45847 -40.17310 -39.21404 -37.56381 -37.07981 -35.72357 -34.33318 -33.49721 -30.69558 -29.64125 -29.40091 -28.71240 -27.65956 -27.41213 -25.88048 -23.21006 -22.46953 -22.12396 -21.64861 -21.30455 -21.19192 -19.21284 -18.46813 -18.35316 -17.74593 -17.22596 -16.85564 -16.53038 -15.98012 -15.90717 -15.83811 -15.68365 -15.37920 -15.03376 -14.89031 -14.82469 -14.54563 -14.25264 -14.00161 -13.87654 -13.46297 -13.23347 -13.11502 -13.03666 -12.86805 -12.75386 -12.74303 -12.63957 -12.38340 -12.07841 -12.02849 -12.00880 -11.92057 -11.89830 -11.83056 -11.67453 -11.51180 -11.45171 -11.30377 -10.79668 -10.65705 -10.26920 -10.08757 -8.95477 -7.93392 -5.32788 1.45438 1.47034 1.51226 1.57226 1.93925 2.43418 2.65151 2.71150 3.26668 3.50154 3.58269 3.63622 3.69213 3.83752 3.88580 3.93084 3.95250 4.02008 4.06170 4.28105 4.32669 4.40554 4.43757 4.53315 4.55387 4.57911 4.61358 4.62921 4.72081 4.81047 4.82079 4.86582 4.88241 4.92013 4.94547 5.04569 5.09879 5.14507 5.21259 5.23469 5.26458 5.29505 5.36074 5.43677 5.44887 5.48501 5.57355 6.09333 6.15074 6.27053 6.52187 6.99197 7.19437 7.64728 8.30702 9.18113 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015859 B = 0.002593 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.096070 B =10796.977791 C =11266.404387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C 0.085 3.915 4 H 0.114 0.886 5 O -0.362 6.362 6 C 0.080 3.920 7 C -0.140 4.140 8 C -0.120 4.120 9 C -0.119 4.119 10 C -0.125 4.125 11 C 0.483 3.517 12 O -0.573 6.573 13 N -0.698 5.698 14 C 0.154 3.846 15 H 0.074 0.926 16 C 0.132 3.868 17 N -0.616 5.616 18 C -0.250 4.250 19 H 0.081 0.919 20 C -0.059 4.059 21 N -0.947 5.947 22 Si 0.982 3.018 23 H -0.289 1.289 24 H -0.289 1.289 25 H -0.265 1.265 26 C 0.171 3.829 27 C 0.078 3.922 28 H 0.097 0.903 29 O -0.397 6.397 30 C 0.026 3.974 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.047 0.953 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.416 0.584 46 H 0.048 0.952 47 H 0.008 0.992 48 H 0.251 0.749 49 H -0.001 1.001 50 H 0.045 0.955 51 H 0.102 0.898 52 H 0.065 0.935 53 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.324 8.924 -0.956 26.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C 0.023 3.977 4 H 0.132 0.868 5 O -0.280 6.280 6 C 0.022 3.978 7 C -0.177 4.177 8 C -0.157 4.157 9 C -0.156 4.156 10 C -0.163 4.163 11 C 0.270 3.730 12 O -0.451 6.451 13 N -0.352 5.352 14 C 0.047 3.953 15 H 0.092 0.908 16 C 0.005 3.995 17 N -0.344 5.344 18 C -0.379 4.379 19 H 0.099 0.901 20 C -0.253 4.253 21 N -0.594 5.594 22 Si 0.809 3.191 23 H -0.216 1.216 24 H -0.215 1.215 25 H -0.189 1.189 26 C 0.044 3.956 27 C 0.019 3.981 28 H 0.115 0.885 29 O -0.315 6.315 30 C -0.070 4.070 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.117 0.883 36 H 0.066 0.934 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.254 0.746 46 H 0.066 0.934 47 H 0.026 0.974 48 H 0.060 0.940 49 H 0.017 0.983 50 H 0.064 0.936 51 H 0.121 0.879 52 H 0.084 0.916 53 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -24.678 9.281 -1.786 26.426 hybrid contribution 1.521 -0.908 0.479 1.835 sum -23.156 8.373 -1.307 24.658 Atomic orbital electron populations 1.21689 0.92653 1.02808 1.02768 1.21638 0.98675 0.91184 1.03731 1.22245 0.87650 0.98036 0.89763 0.86821 1.88032 1.88356 1.20072 1.31525 1.22961 0.96940 0.80052 0.97816 1.22890 0.95196 0.98661 1.00994 1.22446 1.01271 0.96874 0.95103 1.22335 0.95395 0.99865 0.98013 1.22192 0.99004 0.99077 0.96023 1.22306 0.92960 0.76785 0.80915 1.90708 1.65356 1.46741 1.42345 1.45806 1.06045 1.60371 1.22969 1.21556 0.81111 0.97495 0.95091 0.90818 1.21681 0.90873 0.94239 0.92683 1.44569 1.38204 1.26585 1.25058 1.19401 1.02279 0.95564 1.20630 0.90086 1.25763 0.97872 1.01354 1.00288 1.70154 1.24405 1.31375 1.33484 0.85027 0.78285 0.79042 0.76718 1.21586 1.21499 1.18944 1.21491 0.92108 0.90170 0.91792 1.23584 0.97547 0.84550 0.92447 0.88487 1.87862 1.92452 1.27311 1.23899 1.23001 1.00407 1.03749 0.79819 0.92641 0.91327 0.90973 0.92201 0.88344 0.93438 0.89982 0.90261 0.91034 0.89604 0.90649 0.91103 0.92027 0.92286 0.74613 0.93435 0.97415 0.93988 0.98325 0.93639 0.87935 0.91643 0.94691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.83 71.98 0.71 -1.05 16 2 C -0.11 -1.94 5.59 30.59 0.17 -1.77 16 3 C 0.08 1.80 2.37 29.85 0.07 1.87 16 4 H 0.11 1.74 7.90 -2.38 -0.02 1.72 16 5 O -0.36 -9.05 8.72 -129.94 -1.13 -10.18 16 6 C 0.08 1.75 2.91 31.32 0.09 1.84 16 7 C -0.14 -2.05 6.55 31.67 0.21 -1.84 16 8 C -0.12 -1.52 6.91 31.89 0.22 -1.30 16 9 C -0.12 -1.84 6.83 31.67 0.22 -1.62 16 10 C -0.13 -2.79 6.61 31.32 0.21 -2.58 16 11 C 0.48 14.62 6.97 87.66 0.61 15.24 16 12 O -0.57 -23.40 15.93 15.98 0.25 -23.14 16 13 N -0.70 -19.57 4.96 -436.91 -2.17 -21.74 16 14 C 0.15 5.84 3.05 46.18 0.14 5.98 16 15 H 0.07 3.27 7.55 -2.39 -0.02 3.26 16 16 C 0.13 5.88 7.00 86.73 0.61 6.49 16 17 N -0.62 -32.54 3.40 -691.69 -2.35 -34.89 16 18 C -0.25 -14.21 10.22 84.03 0.86 -13.35 16 19 H 0.08 4.43 7.85 -2.91 -0.02 4.40 16 20 C -0.06 -3.35 5.39 84.86 0.46 -2.90 16 21 N -0.95 -57.12 10.78 21.65 0.23 -56.89 16 22 Si 0.98 45.53 29.56 68.60 2.03 47.56 16 23 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 24 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 25 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 26 C 0.17 8.53 5.12 86.84 0.44 8.97 16 27 C 0.08 2.90 3.14 31.99 0.10 3.00 16 28 H 0.10 3.02 7.73 -2.39 -0.02 3.00 16 29 O -0.40 -13.94 10.51 -148.98 -1.57 -15.51 16 30 C 0.03 0.66 10.87 113.37 1.23 1.89 16 31 H 0.05 0.80 7.82 -2.39 -0.02 0.78 16 32 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.07 0.64 8.14 -2.39 -0.02 0.63 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.10 1.31 7.39 -2.39 -0.02 1.30 16 36 H 0.05 1.17 7.69 -2.39 -0.02 1.15 16 37 H 0.08 1.16 8.08 -2.39 -0.02 1.14 16 38 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 43 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 44 H 0.06 1.53 7.95 -2.39 -0.02 1.51 16 45 H 0.42 8.28 7.91 -92.71 -0.73 7.55 16 46 H 0.05 1.95 8.03 -2.39 -0.02 1.93 16 47 H 0.01 0.38 8.14 -2.39 -0.02 0.37 16 48 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 49 H 0.00 -0.08 8.02 -2.39 -0.02 -0.09 16 50 H 0.05 2.46 7.12 -2.38 -0.02 2.44 16 51 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 52 H 0.07 1.27 8.11 -2.39 -0.02 1.25 16 53 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -76.56 419.74 1.78 -74.78 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.14 Total: 21.15 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: 6.34 Total: 18.87 kcal Atomic # 7 Polarization: -109.24 SS G_CDS: -4.28 Total: -113.52 kcal Atomic # 8 Polarization: -46.39 SS G_CDS: -2.44 Total: -48.83 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -76.56 1.78 -74.78 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213507137.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.006 kcal (2) G-P(sol) polarization free energy of solvation -76.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds