Wall clock time and date at job start Sat Apr 11 2020 06:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47285 * 2 1 4 4 H 1.08999 * 109.47582 * 305.29537 * 3 2 1 5 5 O 1.42899 * 109.46717 * 65.29285 * 3 2 1 6 6 C 1.42909 * 114.00019 * 208.55788 * 5 3 2 7 7 C 1.53874 * 110.03151 * 207.35794 * 6 5 3 8 8 C 1.54263 * 106.64014 * 240.68734 * 7 6 5 9 9 C 1.54957 * 104.16430 * 336.45277 * 8 7 6 10 10 C 1.54266 * 110.03039 * 90.19216 * 6 5 3 11 11 C 1.50698 * 109.47356 * 185.28919 * 3 2 1 12 12 O 1.21283 * 120.00284 * 245.00239 * 11 3 2 13 13 N 1.34781 * 119.99706 * 65.00225 * 11 3 2 14 14 C 1.46497 * 119.99927 * 179.97438 * 13 11 3 15 15 H 1.09002 * 110.88778 * 34.29765 * 14 13 11 16 16 C 1.54914 * 111.00562 * 270.42188 * 14 13 11 17 17 N 1.47464 * 104.81058 * 204.95140 * 16 14 13 18 18 C 1.36935 * 125.62798 * 204.05099 * 17 16 14 19 19 H 1.08000 * 120.00383 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99914 * 179.97438 * 18 17 16 21 21 N 1.31617 * 120.00517 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99949 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46976 * 59.99543 * 22 20 18 24 24 H 1.48498 * 109.46968 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47225 * 299.99837 * 22 20 18 26 26 C 1.47025 * 108.72338 * 24.06469 * 17 16 14 27 27 C 1.54323 * 107.27041 * 358.98112 * 26 17 16 28 28 H 1.08999 * 110.71875 * 96.16903 * 27 26 17 29 29 O 1.42904 * 110.86956 * 219.37120 * 27 26 17 30 30 C 1.42902 * 113.99703 * 263.61274 * 29 27 26 31 31 H 1.09004 * 109.47051 * 174.80570 * 1 2 3 32 32 H 1.09000 * 109.46879 * 294.80091 * 1 2 3 33 33 H 1.08997 * 109.47163 * 54.81050 * 1 2 3 34 34 H 1.09009 * 109.46748 * 240.00206 * 2 1 3 35 35 H 1.09000 * 109.46822 * 120.00968 * 2 1 3 36 36 H 1.08996 * 110.01720 * 328.75351 * 6 5 3 37 37 H 1.08999 * 110.03580 * 0.02562 * 7 6 5 38 38 H 1.09008 * 110.02659 * 121.37895 * 7 6 5 39 39 H 1.09005 * 110.48282 * 95.09975 * 8 7 6 40 40 H 1.09001 * 110.48669 * 217.73789 * 8 7 6 41 41 H 1.09000 * 110.71796 * 279.57502 * 9 8 7 42 42 H 1.08994 * 110.77006 * 156.22001 * 9 8 7 43 43 H 1.08990 * 110.48708 * 261.57383 * 10 6 5 44 44 H 1.09001 * 110.48799 * 24.08601 * 10 6 5 45 45 H 0.96994 * 120.00063 * 0.02562 * 13 11 3 46 46 H 1.08999 * 110.36241 * 323.75115 * 16 14 13 47 47 H 1.08999 * 110.36751 * 86.07384 * 16 14 13 48 48 H 0.96996 * 120.00794 * 179.97438 * 21 20 18 49 49 H 1.08992 * 109.88247 * 239.55766 * 26 17 16 50 50 H 1.09003 * 109.87784 * 118.39523 * 26 17 16 51 51 H 1.09000 * 109.46877 * 180.02562 * 30 29 27 52 52 H 1.09005 * 109.46708 * 299.99689 * 30 29 27 53 53 H 1.08996 * 109.47571 * 59.99400 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6014 1.9830 -0.8387 5 8 1.6679 2.0791 1.2240 6 6 1.4929 3.4932 1.1138 7 6 1.7737 4.1662 2.4688 8 6 0.4703 4.8775 2.8872 9 6 -0.2800 5.1106 1.5515 10 6 0.0281 3.8181 0.7555 11 6 3.5413 1.4444 -0.1310 12 8 4.2288 1.8596 0.7778 13 7 4.1200 0.9848 -1.2581 14 6 5.5794 0.9873 -1.3857 15 1 6.0540 0.7928 -0.4239 16 6 6.0815 2.3212 -1.9928 17 7 7.3743 1.9874 -2.6189 18 6 8.3918 2.8696 -2.8668 19 1 8.2823 3.9098 -2.5979 20 6 9.5642 2.4268 -3.4639 21 7 9.6980 1.1590 -3.7913 22 14 10.9520 3.6303 -3.8029 23 1 11.4063 4.2347 -2.5247 24 1 12.0848 2.9127 -4.4408 25 1 10.4684 4.7003 -4.7119 26 6 7.3897 0.5512 -2.9330 27 6 6.0460 -0.0372 -2.4534 28 1 5.3325 -0.0893 -3.2757 29 8 6.2351 -1.3269 -1.8679 30 6 5.9967 -2.4132 -2.7653 31 1 -0.3633 -1.0235 -0.0930 32 1 -0.3633 0.4311 0.9329 33 1 -0.3633 0.5922 -0.8398 34 1 1.8933 -0.5139 -0.8901 35 1 1.8933 -0.5140 0.8899 36 1 2.1620 3.8937 0.3522 37 1 2.0438 3.4143 3.2103 38 1 2.5791 4.8933 2.3647 39 1 -0.1169 4.2400 3.5482 40 1 0.6932 5.8283 3.3714 41 1 0.1147 5.9855 1.0351 42 1 -1.3515 5.2125 1.7229 43 1 -0.0722 3.9964 -0.3151 44 1 -0.6302 3.0081 1.0697 45 1 3.5702 0.6531 -1.9851 46 1 5.3795 2.6843 -2.7434 47 1 6.2197 3.0663 -1.2094 48 1 10.5170 0.8497 -4.2088 49 1 8.2143 0.0663 -2.4105 50 1 7.4943 0.4081 -4.0085 51 1 6.1608 -3.3569 -2.2451 52 1 4.9679 -2.3699 -3.1229 53 1 6.6791 -2.3413 -3.6122 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213507138.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:11 Heat of formation + Delta-G solvation = -134.535570 kcal Electronic energy + Delta-G solvation = -31371.359015 eV Core-core repulsion = 27242.562856 eV Total energy + Delta-G solvation = -4128.796159 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.42553 -40.17014 -39.23276 -37.54464 -37.06455 -35.70589 -34.31718 -33.49524 -30.68304 -29.64145 -29.39798 -28.69859 -27.64680 -27.39014 -25.89823 -23.24156 -22.29693 -22.12783 -21.68786 -21.31883 -21.24801 -19.25351 -18.42885 -18.32166 -17.75205 -17.22612 -16.83653 -16.47610 -16.05375 -15.86749 -15.77079 -15.69699 -15.36085 -15.05728 -14.97866 -14.75879 -14.45832 -14.25314 -14.07847 -13.64050 -13.48237 -13.29239 -13.16082 -13.00756 -12.87535 -12.75017 -12.71630 -12.59003 -12.32659 -12.13674 -12.03356 -12.00915 -11.91813 -11.88511 -11.81873 -11.65977 -11.52205 -11.44944 -11.29023 -10.78788 -10.66035 -10.24722 -10.09790 -8.99451 -7.89490 -5.27987 1.43886 1.48063 1.53151 1.54222 1.92447 2.44768 2.66494 2.76360 3.29565 3.49903 3.54998 3.63202 3.69395 3.82384 3.89433 3.91110 3.99944 4.03377 4.08331 4.27875 4.34075 4.41623 4.44333 4.53179 4.55538 4.59491 4.61388 4.65140 4.71812 4.77987 4.80983 4.88122 4.90072 4.94355 4.96009 5.04500 5.09835 5.14468 5.21237 5.26592 5.29116 5.31315 5.34921 5.43080 5.44896 5.48936 5.63546 6.11091 6.15084 6.31138 6.54438 7.02450 7.21960 7.67289 8.29839 9.19739 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012218 B = 0.002928 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.156613 B = 9559.572832 C =11407.854047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C 0.083 3.917 4 H 0.114 0.886 5 O -0.362 6.362 6 C 0.078 3.922 7 C -0.126 4.126 8 C -0.118 4.118 9 C -0.120 4.120 10 C -0.140 4.140 11 C 0.483 3.517 12 O -0.574 6.574 13 N -0.697 5.697 14 C 0.150 3.850 15 H 0.068 0.932 16 C 0.132 3.868 17 N -0.622 5.622 18 C -0.251 4.251 19 H 0.082 0.918 20 C -0.061 4.061 21 N -0.948 5.948 22 Si 0.982 3.018 23 H -0.281 1.281 24 H -0.291 1.291 25 H -0.272 1.272 26 C 0.175 3.825 27 C 0.078 3.922 28 H 0.100 0.900 29 O -0.398 6.398 30 C 0.026 3.974 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.059 0.941 36 H 0.048 0.952 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.417 0.583 46 H 0.044 0.956 47 H 0.030 0.970 48 H 0.249 0.751 49 H 0.016 0.984 50 H 0.024 0.976 51 H 0.099 0.901 52 H 0.068 0.932 53 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.912 -1.260 4.436 26.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.150 4.150 3 C 0.022 3.978 4 H 0.131 0.869 5 O -0.280 6.280 6 C 0.020 3.980 7 C -0.164 4.164 8 C -0.156 4.156 9 C -0.157 4.157 10 C -0.177 4.177 11 C 0.270 3.730 12 O -0.452 6.452 13 N -0.351 5.351 14 C 0.043 3.957 15 H 0.086 0.914 16 C 0.006 3.994 17 N -0.349 5.349 18 C -0.380 4.380 19 H 0.100 0.900 20 C -0.254 4.254 21 N -0.596 5.596 22 Si 0.809 3.191 23 H -0.207 1.207 24 H -0.217 1.217 25 H -0.198 1.198 26 C 0.049 3.951 27 C 0.019 3.981 28 H 0.118 0.882 29 O -0.317 6.317 30 C -0.070 4.070 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.104 0.896 43 H 0.097 0.903 44 H 0.101 0.899 45 H 0.254 0.746 46 H 0.062 0.938 47 H 0.048 0.952 48 H 0.059 0.941 49 H 0.034 0.966 50 H 0.042 0.958 51 H 0.118 0.882 52 H 0.086 0.914 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -25.217 -1.104 5.384 25.809 hybrid contribution 1.599 0.461 -0.843 1.865 sum -23.618 -0.642 4.541 24.059 Atomic orbital electron populations 1.21688 0.92688 1.02898 1.02592 1.21626 0.98578 0.91112 1.03730 1.22277 0.87507 0.98046 0.89984 0.86854 1.88042 1.87709 1.20757 1.31442 1.22997 0.96829 0.80380 0.97772 1.22201 0.99005 0.98997 0.96197 1.22344 0.94842 1.00348 0.98027 1.22458 1.01122 0.96986 0.95172 1.22893 0.94761 0.99015 1.01052 1.22293 0.92882 0.76357 0.81424 1.90713 1.66174 1.47479 1.40855 1.45740 1.05897 1.64574 1.18923 1.21800 0.80919 0.94556 0.98418 0.91371 1.21915 0.87574 0.95051 0.94884 1.44521 1.13847 1.05515 1.71052 1.19413 0.93713 0.90905 1.33925 0.90043 1.25681 1.00428 0.98242 1.01053 1.70147 1.27167 1.14783 1.47550 0.85114 0.78248 0.77805 0.77917 1.20670 1.21668 1.19792 1.21295 0.93072 0.83589 0.97172 1.23480 0.97049 0.83018 0.94540 0.88185 1.87905 1.90923 1.14177 1.38680 1.23006 1.00708 0.89351 0.93946 0.91077 0.92840 0.91135 0.88196 0.92264 0.93406 0.92201 0.92016 0.91045 0.90667 0.91121 0.89596 0.90251 0.89881 0.74569 0.93793 0.95172 0.94126 0.96617 0.95750 0.88231 0.91375 0.94649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.76 71.98 0.70 -0.93 16 2 C -0.11 -1.81 5.61 30.59 0.17 -1.63 16 3 C 0.08 1.75 2.34 29.84 0.07 1.82 16 4 H 0.11 1.71 7.84 -2.39 -0.02 1.70 16 5 O -0.36 -9.04 8.73 -129.99 -1.13 -10.17 16 6 C 0.08 1.71 3.13 31.32 0.10 1.81 16 7 C -0.13 -2.83 6.61 31.32 0.21 -2.62 16 8 C -0.12 -1.85 6.84 31.69 0.22 -1.64 16 9 C -0.12 -1.55 6.91 31.91 0.22 -1.33 16 10 C -0.14 -2.06 6.54 31.67 0.21 -1.85 16 11 C 0.48 14.65 7.06 87.66 0.62 15.26 16 12 O -0.57 -23.85 16.20 15.95 0.26 -23.59 16 13 N -0.70 -19.28 5.11 -435.96 -2.23 -21.50 16 14 C 0.15 5.71 3.09 46.38 0.14 5.85 16 15 H 0.07 3.14 7.63 -2.39 -0.02 3.12 16 16 C 0.13 5.79 6.93 86.85 0.60 6.39 16 17 N -0.62 -33.18 3.40 -691.88 -2.35 -35.53 16 18 C -0.25 -14.55 10.28 84.03 0.86 -13.69 16 19 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 20 C -0.06 -3.52 5.49 84.86 0.47 -3.05 16 21 N -0.95 -57.55 10.31 21.65 0.22 -57.33 16 22 Si 0.98 46.50 29.55 68.60 2.03 48.53 16 23 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 24 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 26 C 0.17 8.79 5.15 86.73 0.45 9.23 16 27 C 0.08 2.90 3.08 31.78 0.10 3.00 16 28 H 0.10 2.97 7.68 -2.39 -0.02 2.95 16 29 O -0.40 -14.33 10.44 -148.98 -1.56 -15.88 16 30 C 0.03 0.66 10.85 113.37 1.23 1.89 16 31 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.05 0.74 7.97 -2.39 -0.02 0.72 16 33 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.10 1.20 7.76 -2.38 -0.02 1.18 16 35 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.05 1.17 7.82 -2.39 -0.02 1.15 16 37 H 0.06 1.55 7.95 -2.39 -0.02 1.53 16 38 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 40 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.08 1.17 8.08 -2.39 -0.02 1.15 16 45 H 0.42 7.87 8.24 -92.71 -0.76 7.10 16 46 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 49 H 0.02 0.92 7.30 -2.39 -0.02 0.90 16 50 H 0.02 1.32 7.51 -2.39 -0.02 1.30 16 51 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 52 H 0.07 1.29 8.11 -2.38 -0.02 1.27 16 53 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -78.32 420.60 1.71 -76.61 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.11 Total: 20.35 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: 6.36 Total: 18.52 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -4.35 Total: -114.36 kcal Atomic # 8 Polarization: -47.21 SS G_CDS: -2.43 Total: -49.64 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -78.32 1.71 -76.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213507138.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.926 kcal (2) G-P(sol) polarization free energy of solvation -78.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds