Wall clock time and date at job start Sat Apr 11 2020 06:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47174 * 2 1 4 4 H 1.08998 * 109.47210 * 55.91062 * 3 2 1 5 5 C 1.50707 * 109.47169 * 175.91043 * 3 2 1 6 6 H 1.07993 * 120.00176 * 119.99939 * 5 3 2 7 7 C 1.37883 * 119.99596 * 299.99828 * 5 3 2 8 8 N 1.31509 * 120.00160 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99692 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.47419 * 59.99807 * 9 7 5 11 11 H 1.48495 * 109.47232 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46825 * 299.99859 * 9 7 5 13 13 N 1.46898 * 109.46979 * 295.90581 * 3 2 1 14 14 C 1.46907 * 110.99963 * 153.18374 * 13 3 2 15 15 H 1.08999 * 110.42828 * 329.22224 * 14 13 3 16 16 C 1.54438 * 110.58740 * 91.81913 * 14 13 3 17 17 O 1.44418 * 104.81244 * 142.59689 * 16 14 13 18 18 C 1.46047 * 105.43216 * 319.06640 * 17 16 14 19 19 H 1.09000 * 112.85419 * 278.68040 * 18 17 16 20 20 C 1.53749 * 109.95884 * 151.43907 * 18 17 16 21 21 N 1.46668 * 106.85928 * 276.57025 * 20 18 17 22 22 C 1.34780 * 125.28823 * 162.02220 * 21 20 18 23 23 O 1.21517 * 119.99888 * 180.02562 * 22 21 20 24 24 O 1.34634 * 120.00242 * 0.02562 * 22 21 20 25 25 C 1.45195 * 117.00038 * 179.97438 * 24 22 21 26 26 C 1.53004 * 109.47356 * 60.00337 * 25 24 22 27 27 C 1.53007 * 109.47089 * 179.97438 * 25 24 22 28 28 C 1.52998 * 109.47274 * 299.99792 * 25 24 22 29 29 C 1.46583 * 109.40134 * 342.02748 * 21 20 18 30 30 C 1.53740 * 108.11728 * 1.23409 * 29 21 20 31 31 H 1.08995 * 112.86829 * 252.47801 * 30 29 21 32 32 H 1.09003 * 109.46998 * 175.75028 * 1 2 3 33 33 H 1.08999 * 109.47231 * 295.75080 * 1 2 3 34 34 H 1.08994 * 109.46963 * 55.75192 * 1 2 3 35 35 H 1.09004 * 109.47095 * 239.99353 * 2 1 3 36 36 H 1.09001 * 109.47133 * 119.99901 * 2 1 3 37 37 H 0.96998 * 120.00235 * 180.02562 * 8 7 5 38 38 H 1.00900 * 111.00397 * 277.13799 * 13 3 2 39 39 H 1.09003 * 110.36861 * 261.43425 * 16 14 13 40 40 H 1.08999 * 110.37147 * 23.65181 * 16 14 13 41 41 H 1.08999 * 109.98302 * 35.93078 * 20 18 17 42 42 H 1.08999 * 109.98202 * 157.19816 * 20 18 17 43 43 H 1.08999 * 109.46982 * 59.99315 * 26 25 24 44 44 H 1.08997 * 109.47272 * 179.97438 * 26 25 24 45 45 H 1.09001 * 109.46533 * 300.00129 * 26 25 24 46 46 H 1.09004 * 109.46569 * 60.00419 * 27 25 24 47 47 H 1.08997 * 109.47207 * 179.97438 * 27 25 24 48 48 H 1.08999 * 109.47008 * 300.00537 * 27 25 24 49 49 H 1.09000 * 109.46837 * 60.00547 * 28 25 24 50 50 H 1.08997 * 109.47241 * 180.02562 * 28 25 24 51 51 H 1.09000 * 109.47258 * 300.00405 * 28 25 24 52 52 H 1.09000 * 109.73719 * 241.56545 * 29 21 20 53 53 H 1.08994 * 109.74111 * 120.90422 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6180 1.9770 0.8511 5 6 3.5436 1.4437 0.1013 6 1 4.1372 1.8923 -0.6814 7 6 4.1614 0.8719 1.1934 8 7 3.4385 0.3251 2.1463 9 14 6.0251 0.8740 1.3194 10 1 6.5197 2.2743 1.3197 11 1 6.4369 0.2028 2.5783 12 1 6.6003 0.1461 0.1599 13 7 1.6327 2.1058 -1.2458 14 6 1.5147 3.5576 -1.0550 15 1 1.2157 3.7838 -0.0315 16 6 2.8470 4.2602 -1.3964 17 8 2.4595 5.4950 -2.0375 18 6 1.3431 5.1453 -2.9117 19 1 1.6664 4.7154 -3.8598 20 6 0.4135 6.3574 -3.0862 21 7 -0.4888 6.3713 -1.9299 22 6 -1.2130 7.4316 -1.5201 23 8 -1.9320 7.3360 -0.5452 24 8 -1.1397 8.5967 -2.1909 25 6 -1.9475 9.6957 -1.6933 26 6 -1.5352 10.0221 -0.2564 27 6 -1.7337 10.9266 -2.5766 28 6 -3.4244 9.2970 -1.7221 29 6 -0.4802 5.0527 -1.2896 30 6 0.5023 4.1543 -2.0586 31 1 0.0011 3.3942 -2.6577 32 1 -0.3633 -1.0249 -0.0762 33 1 -0.3633 0.4465 0.9256 34 1 -0.3633 0.5783 -0.8494 35 1 1.8933 -0.5140 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 3.8730 -0.0767 2.9147 38 1 2.2722 1.8905 -1.9960 39 1 3.4115 4.4657 -0.4869 40 1 3.4363 3.6460 -2.0772 41 1 0.9998 7.2758 -3.1123 42 1 -0.1616 6.2564 -4.0066 43 1 -0.4831 10.3060 -0.2360 44 1 -2.1414 10.8474 0.1170 45 1 -1.6872 9.1453 0.3731 46 1 -2.0272 10.6944 -3.6004 47 1 -2.3405 11.7515 -2.2034 48 1 -0.6815 11.2104 -2.5558 49 1 -3.5763 8.4203 -1.0924 50 1 -4.0308 10.1222 -1.3489 51 1 -3.7181 9.0646 -2.7457 52 1 -1.4799 4.6198 -1.3250 53 1 -0.1571 5.1489 -0.2531 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255151429.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:26 Heat of formation + Delta-G solvation = -138.265664 kcal Electronic energy + Delta-G solvation = -31636.710288 eV Core-core repulsion = 27507.752380 eV Total energy + Delta-G solvation = -4128.957908 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.09317 -41.10723 -38.50570 -37.67610 -36.73658 -35.03254 -34.55642 -33.23301 -31.61055 -30.44973 -28.63625 -28.36726 -28.27502 -27.38211 -25.37678 -24.48851 -22.89741 -22.50132 -21.60078 -21.11347 -20.46679 -19.07255 -18.65848 -17.78411 -17.61623 -17.07971 -16.89560 -16.57309 -16.33403 -15.94138 -15.60128 -15.36200 -14.96662 -14.87535 -14.84695 -14.52888 -14.28405 -13.89889 -13.69629 -13.46691 -13.34063 -13.18417 -13.14923 -13.08904 -13.00158 -12.89529 -12.85759 -12.67710 -12.53373 -12.50591 -12.38031 -12.30059 -12.10740 -12.03860 -11.80201 -11.47211 -11.39821 -11.28544 -11.16829 -11.00904 -10.73757 -10.43244 -9.81095 -9.08805 -8.04047 -6.24830 1.02160 1.40023 1.41681 1.47392 1.69946 2.40955 2.69584 2.86896 3.16957 3.34344 3.43594 3.66406 3.75980 3.80261 3.95196 3.99347 4.08571 4.16459 4.20135 4.36953 4.48593 4.55149 4.61150 4.61722 4.64855 4.69349 4.75286 4.76555 4.77530 4.81412 4.84246 4.88669 4.90202 4.95651 4.98108 5.05881 5.11823 5.20738 5.23482 5.28355 5.35458 5.44177 5.46468 5.55297 5.65200 5.74895 5.84040 6.12761 6.21512 6.35444 6.37380 6.80989 7.03362 7.21171 7.46914 8.92947 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017479 B = 0.002614 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.552298 B =10709.478554 C =11113.928178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 C 0.223 3.777 4 H -0.004 1.004 5 C -0.552 4.552 6 H 0.060 0.940 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.943 3.057 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.270 1.270 13 N -0.661 5.661 14 C 0.078 3.922 15 H 0.059 0.941 16 C 0.037 3.963 17 O -0.391 6.391 18 C 0.065 3.935 19 H 0.137 0.863 20 C 0.112 3.888 21 N -0.599 5.599 22 C 0.662 3.338 23 O -0.595 6.595 24 O -0.363 6.363 25 C 0.122 3.878 26 C -0.182 4.182 27 C -0.133 4.133 28 C -0.178 4.178 29 C 0.139 3.861 30 C -0.104 4.104 31 H 0.137 0.863 32 H 0.043 0.957 33 H 0.024 0.976 34 H 0.064 0.936 35 H 0.033 0.967 36 H 0.057 0.943 37 H 0.260 0.740 38 H 0.338 0.662 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.084 0.916 42 H 0.113 0.887 43 H 0.057 0.943 44 H 0.094 0.906 45 H 0.055 0.945 46 H 0.073 0.927 47 H 0.104 0.896 48 H 0.067 0.933 49 H 0.057 0.943 50 H 0.092 0.908 51 H 0.066 0.934 52 H 0.077 0.923 53 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.970 16.689 -14.052 23.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.141 4.141 3 C 0.115 3.885 4 H 0.014 0.986 5 C -0.591 4.591 6 H 0.078 0.922 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.195 1.195 13 N -0.291 5.291 14 C -0.034 4.034 15 H 0.077 0.923 16 C -0.041 4.041 17 O -0.310 6.310 18 C 0.007 3.993 19 H 0.155 0.845 20 C -0.010 4.010 21 N -0.340 5.340 22 C 0.418 3.582 23 O -0.486 6.486 24 O -0.277 6.277 25 C 0.086 3.914 26 C -0.239 4.239 27 C -0.190 4.190 28 C -0.235 4.235 29 C 0.018 3.982 30 C -0.124 4.124 31 H 0.155 0.845 32 H 0.062 0.938 33 H 0.044 0.956 34 H 0.083 0.917 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.157 0.843 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.131 0.869 43 H 0.076 0.924 44 H 0.113 0.887 45 H 0.074 0.926 46 H 0.092 0.908 47 H 0.122 0.878 48 H 0.086 0.914 49 H 0.076 0.924 50 H 0.111 0.889 51 H 0.085 0.915 52 H 0.095 0.905 53 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.830 16.816 -13.423 24.088 hybrid contribution 2.116 -0.295 1.225 2.463 sum -8.714 16.521 -12.198 22.309 Atomic orbital electron populations 1.21587 0.96550 0.99891 1.00444 1.21356 0.94250 0.98367 1.00157 1.18967 0.91658 0.91504 0.86395 0.98590 1.22170 0.93747 1.37422 1.05786 0.92225 1.25625 1.01603 0.95038 0.95713 1.70000 1.36398 1.38725 1.10003 0.85842 0.81754 0.78092 0.77315 1.20200 1.21572 1.19464 1.60841 1.54216 1.05466 1.08543 1.22878 0.93408 0.89244 0.97917 0.92264 1.24069 0.97428 0.85643 0.97008 1.89369 1.51192 1.30360 1.60127 1.24399 0.85714 0.93772 0.95371 0.84523 1.22096 0.90703 0.99320 0.88862 1.46934 1.45072 1.09774 1.32184 1.17620 0.79315 0.80522 0.80755 1.90896 1.44038 1.84280 1.29394 1.86312 1.66196 1.19406 1.55812 1.22472 0.89979 0.83880 0.95031 1.22489 1.02192 1.03346 0.95855 1.21873 1.03763 0.93773 0.99592 1.22458 0.94335 1.03713 1.03000 1.21780 1.00479 0.80005 0.95979 1.23327 0.95433 0.96955 0.96685 0.84529 0.93824 0.95632 0.91668 0.94865 0.92431 0.93095 0.84345 0.91188 0.91216 0.89759 0.86869 0.92387 0.88746 0.92552 0.90776 0.87791 0.91442 0.92371 0.88913 0.91533 0.90471 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.88 9.84 71.98 0.71 -4.17 16 2 C -0.10 -4.65 5.44 30.59 0.17 -4.49 16 3 C 0.22 10.31 1.99 44.17 0.09 10.40 16 4 H 0.00 -0.21 7.38 -2.39 -0.02 -0.22 16 5 C -0.55 -27.71 8.05 25.60 0.21 -27.51 16 6 H 0.06 2.87 7.17 -2.91 -0.02 2.85 16 7 C 0.02 1.07 5.30 84.66 0.45 1.52 16 8 N -0.91 -51.12 11.29 21.45 0.24 -50.88 16 9 Si 0.94 42.20 29.54 68.60 2.03 44.22 16 10 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 11 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 13 N -0.66 -23.76 5.43 -468.13 -2.54 -26.30 16 14 C 0.08 2.57 2.99 45.93 0.14 2.71 16 15 H 0.06 2.34 6.31 -2.39 -0.02 2.32 16 16 C 0.04 1.22 6.43 72.47 0.47 1.69 16 17 O -0.39 -11.89 11.38 -148.98 -1.70 -13.58 16 18 C 0.06 1.43 4.41 31.69 0.14 1.57 16 19 H 0.14 2.16 8.14 -2.39 -0.02 2.14 16 20 C 0.11 2.31 6.52 86.60 0.56 2.87 16 21 N -0.60 -16.23 3.31 -948.62 -3.14 -19.37 16 22 C 0.66 19.80 7.91 129.79 1.03 20.82 16 23 O -0.59 -20.80 12.19 19.79 0.24 -20.56 16 24 O -0.36 -9.14 9.45 -55.43 -0.52 -9.66 16 25 C 0.12 2.43 1.13 -10.79 -0.01 2.41 16 26 C -0.18 -3.82 8.37 71.98 0.60 -3.22 16 27 C -0.13 -1.64 8.85 71.98 0.64 -1.00 16 28 C -0.18 -3.35 8.37 71.98 0.60 -2.75 16 29 C 0.14 3.94 6.43 86.61 0.56 4.50 16 30 C -0.10 -2.62 3.84 -9.17 -0.04 -2.65 16 31 H 0.14 2.95 8.06 -2.39 -0.02 2.93 16 32 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.06 2.29 7.61 -2.39 -0.02 2.27 16 35 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.06 3.02 5.97 -2.39 -0.01 3.00 16 37 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 38 H 0.34 11.58 7.70 -89.69 -0.69 10.89 16 39 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.07 2.18 7.37 -2.39 -0.02 2.17 16 41 H 0.08 1.81 8.11 -2.39 -0.02 1.79 16 42 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.06 1.58 5.88 -2.39 -0.01 1.56 16 46 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 47 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.06 1.48 5.88 -2.39 -0.01 1.47 16 50 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 51 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 52 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 53 H 0.05 1.57 7.01 -2.39 -0.02 1.56 16 Total: -1.00 -63.70 406.55 1.12 -62.58 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: 0.20 Total: 30.85 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 6.30 Total: 2.70 kcal Atomic # 7 Polarization: -91.12 SS G_CDS: -5.44 Total: -96.55 kcal Atomic # 8 Polarization: -41.82 SS G_CDS: -1.98 Total: -43.80 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Total: -63.70 1.12 -62.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255151429.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.686 kcal (2) G-P(sol) polarization free energy of solvation -63.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds