Wall clock time and date at job start Sat Apr 11 2020 06:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46888 * 2 1 4 4 H 1.08997 * 109.47045 * 54.63207 * 3 2 1 5 5 C 1.50700 * 109.47098 * 174.63177 * 3 2 1 6 6 H 1.08002 * 120.00014 * 119.99696 * 5 3 2 7 7 C 1.37879 * 119.99925 * 300.00075 * 5 3 2 8 8 N 1.31508 * 120.00000 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 119.99688 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.47008 * 90.00594 * 9 7 5 11 11 H 1.48510 * 109.46788 * 209.99806 * 9 7 5 12 12 H 1.48494 * 109.47473 * 329.99812 * 9 7 5 13 13 N 1.46904 * 109.46812 * 294.63095 * 3 2 1 14 14 C 1.46900 * 111.00015 * 108.39046 * 13 3 2 15 15 H 1.08999 * 110.46114 * 327.05088 * 14 13 3 16 16 C 1.54013 * 110.51385 * 89.81277 * 14 13 3 17 17 N 1.46777 * 106.48249 * 146.18254 * 16 14 13 18 18 C 1.34776 * 125.33647 * 159.74425 * 17 16 14 19 19 O 1.21509 * 119.99999 * 179.97438 * 18 17 16 20 20 O 1.34638 * 120.00185 * 359.95264 * 18 17 16 21 21 C 1.45200 * 117.00120 * 180.02562 * 20 18 17 22 22 C 1.52994 * 109.47323 * 60.00193 * 21 20 18 23 23 C 1.53002 * 109.47204 * 180.02562 * 21 20 18 24 24 C 1.53000 * 109.46975 * 300.00339 * 21 20 18 25 25 C 1.46645 * 109.32582 * 339.70610 * 17 16 14 26 26 H 1.09000 * 111.93433 * 241.68462 * 25 17 16 27 27 C 1.54200 * 109.17587 * 117.82671 * 25 17 16 28 28 C 1.53918 * 104.60517 * 249.18753 * 27 25 17 29 29 O 1.43344 * 106.53217 * 339.39373 * 28 27 25 30 30 C 1.43101 * 108.48162 * 30.24518 * 29 28 27 31 31 H 1.08999 * 111.85539 * 210.20192 * 30 29 28 32 32 H 1.08998 * 109.47122 * 61.38920 * 1 2 3 33 33 H 1.08999 * 109.47184 * 181.38801 * 1 2 3 34 34 H 1.09006 * 109.47381 * 301.38422 * 1 2 3 35 35 H 1.08997 * 109.47133 * 239.99579 * 2 1 3 36 36 H 1.09001 * 109.46941 * 119.99888 * 2 1 3 37 37 H 0.96998 * 120.00303 * 180.02562 * 8 7 5 38 38 H 1.00896 * 111.00106 * 344.43675 * 13 3 2 39 39 H 1.09002 * 110.05503 * 265.43454 * 16 14 13 40 40 H 1.08997 * 110.05251 * 26.87797 * 16 14 13 41 41 H 1.09005 * 109.47045 * 59.99597 * 22 21 20 42 42 H 1.09000 * 109.47587 * 179.97438 * 22 21 20 43 43 H 1.09004 * 109.47345 * 300.00330 * 22 21 20 44 44 H 1.09000 * 109.46937 * 59.99890 * 23 21 20 45 45 H 1.08998 * 109.47211 * 179.97438 * 23 21 20 46 46 H 1.09000 * 109.47004 * 300.00344 * 23 21 20 47 47 H 1.08999 * 109.47291 * 59.99860 * 24 21 20 48 48 H 1.08998 * 109.47268 * 180.02562 * 24 21 20 49 49 H 1.09000 * 109.47254 * 300.00163 * 24 21 20 50 50 H 1.08998 * 110.41043 * 7.96738 * 27 25 17 51 51 H 1.09003 * 110.40969 * 130.40721 * 27 25 17 52 52 H 1.08996 * 110.04275 * 98.65991 * 28 27 25 53 53 H 1.08994 * 110.04751 * 220.13071 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6002 1.9833 0.8380 5 6 3.5411 1.4447 0.1329 6 1 4.1511 1.8876 -0.6405 7 6 4.1358 0.8811 1.2419 8 7 5.4458 0.8825 1.3577 9 14 3.0806 0.1157 2.5799 10 1 2.8607 -1.3211 2.2755 11 1 3.7706 0.2444 3.8887 12 1 1.7721 0.8151 2.6393 13 7 1.6589 2.0966 -1.2590 14 6 0.5996 3.0898 -1.0368 15 1 -0.0590 2.7701 -0.2293 16 6 1.2099 4.4692 -0.7255 17 7 0.3022 5.4665 -1.3050 18 6 0.2402 6.7647 -0.9481 19 8 -0.5508 7.5078 -1.4945 20 8 1.0544 7.2380 0.0140 21 6 0.9322 8.6460 0.3472 22 6 -0.4895 8.9334 0.8338 23 6 1.9306 8.9971 1.4521 24 6 1.2272 9.4911 -0.8935 25 6 -0.5260 4.8291 -2.3338 26 1 -0.3637 5.2695 -3.3176 27 6 -2.0078 4.9144 -1.9157 28 6 -2.4037 3.4627 -1.5919 29 8 -1.4512 2.6222 -2.2560 30 6 -0.2043 3.3204 -2.3302 31 1 0.3696 3.0334 -3.2113 32 1 -0.3633 0.4921 -0.9022 33 1 -0.3633 -1.0273 0.0249 34 1 -0.3634 0.5352 0.8773 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 5.8642 0.4858 2.1377 38 1 1.3777 1.4164 -1.9492 39 1 1.2819 4.6113 0.3528 40 1 2.1971 4.5523 -1.1800 41 1 -0.6997 8.3312 1.7178 42 1 -0.5812 9.9902 1.0844 43 1 -1.2006 8.6833 0.0464 44 1 2.9434 8.7924 1.1050 45 1 1.8392 10.0541 1.7019 46 1 1.7209 8.3949 2.3361 47 1 0.5162 9.2411 -1.6810 48 1 1.1359 10.5481 -0.6433 49 1 2.2401 9.2864 -1.2403 50 1 -2.1181 5.5443 -1.0331 51 1 -2.6128 5.2993 -2.7367 52 1 -2.3630 3.2956 -0.5156 53 1 -3.4071 3.2571 -1.9646 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152238.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:14 Heat of formation + Delta-G solvation = -129.487317 kcal Electronic energy + Delta-G solvation = -32630.264217 eV Core-core repulsion = 28501.686967 eV Total energy + Delta-G solvation = -4128.577250 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.36058 -41.19419 -38.44278 -38.25982 -36.81443 -35.02650 -34.51632 -33.42499 -31.99932 -30.46679 -29.13285 -28.37513 -28.35874 -28.25434 -24.89522 -24.12833 -23.47569 -22.33818 -21.91370 -21.50407 -20.42000 -19.04473 -18.72142 -18.05074 -17.66398 -17.20722 -16.88012 -16.71676 -16.44394 -16.16976 -15.81514 -15.49744 -15.39127 -15.05077 -14.81515 -14.63293 -14.41252 -14.25577 -13.75074 -13.58122 -13.49923 -13.37848 -13.33480 -13.08460 -13.02995 -12.91532 -12.88222 -12.87342 -12.55300 -12.47808 -12.39617 -12.32670 -12.26343 -12.22679 -11.88933 -11.63369 -11.39676 -11.30682 -11.22924 -11.07291 -10.72145 -10.54196 -9.89981 -9.11324 -8.22871 -6.23325 0.98964 1.29786 1.35191 1.44033 1.66424 2.33668 2.59076 2.83938 3.10040 3.21160 3.36258 3.56576 3.70421 3.74078 3.79799 3.92778 3.94099 4.03363 4.12915 4.22295 4.29057 4.35145 4.37090 4.43932 4.50811 4.61531 4.65874 4.66119 4.75244 4.75859 4.78341 4.81109 4.83198 4.84815 4.86314 4.95031 4.97900 5.03472 5.09482 5.11132 5.18681 5.23888 5.27684 5.32369 5.43082 5.47174 5.72518 5.85220 6.03641 6.30156 6.62612 6.77163 6.85423 7.19563 7.40759 8.94365 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010418 B = 0.004128 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2687.002139 B = 6780.826432 C = 8637.187245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.154 4.154 3 C 0.199 3.801 4 H 0.017 0.983 5 C -0.492 4.492 6 H 0.040 0.960 7 C 0.011 3.989 8 N -0.951 5.951 9 Si 0.942 3.058 10 H -0.267 1.267 11 H -0.303 1.303 12 H -0.251 1.251 13 N -0.663 5.663 14 C 0.066 3.934 15 H 0.058 0.942 16 C 0.122 3.878 17 N -0.593 5.593 18 C 0.667 3.333 19 O -0.578 6.578 20 O -0.374 6.374 21 C 0.121 3.879 22 C -0.176 4.176 23 C -0.139 4.139 24 C -0.177 4.177 25 C 0.130 3.870 26 H 0.110 0.890 27 C -0.151 4.151 28 C 0.047 3.953 29 O -0.364 6.364 30 C 0.083 3.917 31 H 0.140 0.860 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.042 0.958 35 H 0.066 0.934 36 H 0.037 0.963 37 H 0.263 0.737 38 H 0.347 0.653 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.095 0.905 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.108 0.892 46 H 0.063 0.937 47 H 0.067 0.933 48 H 0.095 0.905 49 H 0.055 0.945 50 H 0.071 0.929 51 H 0.102 0.898 52 H 0.051 0.949 53 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.219 12.832 -4.275 21.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.192 4.192 3 C 0.089 3.911 4 H 0.034 0.966 5 C -0.531 4.531 6 H 0.058 0.942 7 C -0.185 4.185 8 N -0.592 5.592 9 Si 0.770 3.230 10 H -0.194 1.194 11 H -0.231 1.231 12 H -0.176 1.176 13 N -0.295 5.295 14 C -0.045 4.045 15 H 0.076 0.924 16 C -0.002 4.002 17 N -0.334 5.334 18 C 0.423 3.577 19 O -0.469 6.469 20 O -0.289 6.289 21 C 0.085 3.915 22 C -0.233 4.233 23 C -0.196 4.196 24 C -0.234 4.234 25 C 0.027 3.973 26 H 0.128 0.872 27 C -0.190 4.190 28 C -0.029 4.029 29 O -0.282 6.282 30 C 0.024 3.976 31 H 0.157 0.843 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.085 0.915 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.167 0.833 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.113 0.887 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.127 0.873 46 H 0.082 0.918 47 H 0.085 0.915 48 H 0.114 0.886 49 H 0.074 0.926 50 H 0.090 0.910 51 H 0.120 0.880 52 H 0.070 0.930 53 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -16.845 13.412 -4.316 21.961 hybrid contribution -0.182 -0.826 1.224 1.487 sum -17.028 12.586 -3.093 21.399 Atomic orbital electron populations 1.21822 0.94635 1.02087 1.01793 1.22441 0.96186 0.99458 1.01142 1.19463 0.93603 0.89945 0.88045 0.96560 1.21333 0.91571 1.35440 1.04790 0.94214 1.25722 0.95679 0.96837 1.00291 1.70037 1.10839 1.47801 1.30538 0.85968 0.79496 0.79575 0.77985 1.19371 1.23107 1.17555 1.60352 1.38901 1.19099 1.11168 1.22683 0.91862 0.92327 0.97668 0.92429 1.21929 0.93297 0.86621 0.98376 1.46936 1.40687 1.05732 1.40052 1.17534 0.79601 0.81627 0.78966 1.90862 1.41684 1.56191 1.58151 1.86395 1.58618 1.31199 1.52642 1.22474 0.97849 0.74729 0.96417 1.22449 0.95232 1.03837 1.01763 1.21906 0.97864 1.03546 0.96263 1.22455 1.02182 1.01132 0.97617 1.22634 0.90527 0.92467 0.91649 0.87223 1.23126 0.94707 0.97788 1.03333 1.23309 0.94290 0.88067 0.97208 1.88536 1.19837 1.40918 1.78928 1.23545 0.86361 0.89233 0.98482 0.84277 0.91313 0.91731 0.93893 0.91488 0.94427 0.92825 0.83314 0.91920 0.91168 0.92480 0.88658 0.91403 0.91923 0.87302 0.91808 0.91453 0.88631 0.92585 0.91025 0.87990 0.93029 0.86552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.48 9.14 71.98 0.66 -3.82 16 2 C -0.15 -5.99 4.71 30.60 0.14 -5.85 16 3 C 0.20 8.67 1.68 44.17 0.07 8.74 16 4 H 0.02 0.76 6.43 -2.39 -0.02 0.74 16 5 C -0.49 -27.34 9.42 25.60 0.24 -27.10 16 6 H 0.04 2.50 8.06 -2.91 -0.02 2.47 16 7 C 0.01 0.64 5.45 84.66 0.46 1.11 16 8 N -0.95 -59.28 13.96 21.45 0.30 -58.98 16 9 Si 0.94 44.54 24.41 68.60 1.67 46.22 16 10 H -0.27 -12.05 6.83 99.48 0.68 -11.37 16 11 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 12 H -0.25 -11.04 6.53 99.48 0.65 -10.39 16 13 N -0.66 -24.05 5.85 -469.77 -2.75 -26.80 16 14 C 0.07 2.03 2.12 45.61 0.10 2.13 16 15 H 0.06 1.85 6.81 -2.39 -0.02 1.83 16 16 C 0.12 3.98 6.57 86.67 0.57 4.55 16 17 N -0.59 -17.09 2.98 -920.38 -2.75 -19.83 16 18 C 0.67 20.28 7.36 129.79 0.95 21.23 16 19 O -0.58 -17.85 11.44 19.81 0.23 -17.62 16 20 O -0.37 -11.26 9.42 -55.48 -0.52 -11.78 16 21 C 0.12 2.77 1.13 -10.80 -0.01 2.76 16 22 C -0.18 -3.60 8.37 71.98 0.60 -3.00 16 23 C -0.14 -2.54 8.85 71.98 0.64 -1.90 16 24 C -0.18 -3.74 8.37 71.98 0.60 -3.14 16 25 C 0.13 3.08 3.89 45.80 0.18 3.26 16 26 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 27 C -0.15 -3.07 6.27 31.31 0.20 -2.88 16 28 C 0.05 0.91 7.40 72.29 0.53 1.45 16 29 O -0.36 -8.46 11.06 -148.98 -1.65 -10.10 16 30 C 0.08 2.00 3.87 31.37 0.12 2.12 16 31 H 0.14 3.09 7.99 -2.39 -0.02 3.07 16 32 H 0.07 1.94 7.00 -2.39 -0.02 1.92 16 33 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.07 2.56 8.06 -2.39 -0.02 2.54 16 36 H 0.04 1.60 3.22 -2.39 -0.01 1.59 16 37 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 38 H 0.35 11.32 7.27 -89.70 -0.65 10.67 16 39 H 0.06 2.22 8.08 -2.39 -0.02 2.20 16 40 H 0.07 2.58 8.07 -2.39 -0.02 2.56 16 41 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.07 1.67 5.88 -2.38 -0.01 1.66 16 44 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.07 1.71 5.88 -2.39 -0.01 1.70 16 48 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.07 1.69 7.15 -2.39 -0.02 1.67 16 51 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 52 H 0.05 1.06 8.07 -2.39 -0.02 1.04 16 53 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -67.60 398.17 0.76 -66.84 By element: Atomic # 1 Polarization: 32.23 SS G_CDS: 0.16 Total: 32.39 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: 6.06 Total: -0.33 kcal Atomic # 7 Polarization: -100.42 SS G_CDS: -5.19 Total: -105.61 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -1.94 Total: -39.50 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.67 Total: 46.22 kcal Total: -67.60 0.76 -66.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152238.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.645 kcal (2) G-P(sol) polarization free energy of solvation -67.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds