Wall clock time and date at job start Sat Apr 11 2020 06:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52999 * 109.47198 * 2 1 4 4 H 1.09001 * 109.47016 * 55.38491 * 3 2 1 5 5 C 1.50698 * 109.47030 * 175.38265 * 3 2 1 6 6 H 1.08000 * 119.99827 * 120.00119 * 5 3 2 7 7 C 1.37880 * 119.99939 * 300.00064 * 5 3 2 8 8 N 1.31503 * 120.00118 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99533 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47294 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47099 * 120.00046 * 9 7 5 12 12 H 1.48503 * 109.47336 * 240.00038 * 9 7 5 13 13 N 1.46902 * 109.47134 * 295.38666 * 3 2 1 14 14 C 1.46896 * 110.99816 * 153.96509 * 13 3 2 15 15 H 1.09004 * 110.87817 * 33.42376 * 14 13 3 16 16 C 1.54841 * 110.96386 * 269.62841 * 14 13 3 17 17 N 1.47390 * 104.80447 * 204.66282 * 16 14 13 18 18 C 1.34773 * 125.57118 * 204.72169 * 17 16 14 19 19 O 1.21519 * 119.99755 * 179.97438 * 18 17 16 20 20 O 1.34632 * 120.00392 * 359.97438 * 18 17 16 21 21 C 1.45198 * 117.00349 * 179.97438 * 20 18 17 22 22 C 1.52998 * 109.47237 * 59.99934 * 21 20 18 23 23 C 1.53004 * 109.47427 * 180.02562 * 21 20 18 24 24 C 1.53009 * 109.46874 * 299.99880 * 21 20 18 25 25 C 1.46733 * 108.85212 * 24.72269 * 17 16 14 26 26 H 1.08995 * 111.78821 * 235.05072 * 25 17 16 27 27 C 1.53897 * 109.81237 * 109.30965 * 25 17 16 28 28 O 1.42789 * 107.13079 * 272.39681 * 27 25 17 29 29 C 1.42804 * 110.74729 * 342.00184 * 28 27 25 30 30 C 1.53792 * 108.33391 * 1.65552 * 29 28 27 31 31 H 1.09002 * 113.34393 * 250.44103 * 30 29 28 32 32 H 1.08996 * 109.47123 * 176.17777 * 1 2 3 33 33 H 1.09004 * 109.47061 * 296.17676 * 1 2 3 34 34 H 1.09001 * 109.47134 * 56.17270 * 1 2 3 35 35 H 1.09000 * 109.46995 * 239.99813 * 2 1 3 36 36 H 1.09002 * 109.46933 * 119.99930 * 2 1 3 37 37 H 0.97003 * 119.99984 * 179.97438 * 8 7 5 38 38 H 1.00900 * 110.99744 * 277.92400 * 13 3 2 39 39 H 1.09003 * 110.36860 * 323.49062 * 16 14 13 40 40 H 1.08999 * 110.37235 * 85.82816 * 16 14 13 41 41 H 1.08995 * 109.46900 * 60.00183 * 22 21 20 42 42 H 1.08996 * 109.46998 * 180.02562 * 22 21 20 43 43 H 1.09006 * 109.47036 * 299.99968 * 22 21 20 44 44 H 1.08999 * 109.47533 * 59.99663 * 23 21 20 45 45 H 1.08999 * 109.47109 * 180.02562 * 23 21 20 46 46 H 1.09000 * 109.46611 * 299.99430 * 23 21 20 47 47 H 1.08999 * 109.46941 * 59.99941 * 24 21 20 48 48 H 1.08999 * 109.46941 * 179.97438 * 24 21 20 49 49 H 1.08999 * 109.47239 * 299.99817 * 24 21 20 50 50 H 1.09002 * 109.89714 * 31.80657 * 27 25 17 51 51 H 1.08996 * 109.90014 * 152.87439 * 27 25 17 52 52 H 1.09002 * 109.69573 * 241.93029 * 29 28 27 53 53 H 1.09002 * 109.70241 * 121.38016 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6108 1.9796 0.8458 5 6 3.5427 1.4440 0.1144 6 1 4.1431 1.8903 -0.6646 7 6 4.1510 0.8756 1.2135 8 7 3.4200 0.3317 2.1617 9 14 6.0137 0.8768 1.3548 10 1 6.5999 1.5447 0.1650 11 1 6.4165 1.6098 2.5819 12 1 6.5054 -0.5224 1.4301 13 7 1.6435 2.1021 -1.2513 14 6 1.5420 3.5563 -1.0705 15 1 2.2783 3.9104 -0.3489 16 6 0.1097 3.9631 -0.6454 17 7 -0.0280 5.3650 -1.0791 18 6 -0.8689 6.2722 -0.5440 19 8 -0.8989 7.4053 -0.9820 20 8 -1.6757 5.9231 0.4757 21 6 -2.5548 6.9516 1.0027 22 6 -3.4851 7.4450 -0.1071 23 6 -3.3882 6.3726 2.1477 24 6 -1.7167 8.1211 1.5233 25 6 0.9001 5.6114 -2.1886 26 1 1.5606 6.4539 -1.9840 27 6 0.1123 5.7821 -3.4996 28 8 -0.0661 4.4791 -4.0557 29 6 0.8564 3.5530 -3.4807 30 6 1.6931 4.2957 -2.4254 31 1 2.7309 4.4446 -2.7235 32 1 -0.3633 -1.0253 -0.0685 33 1 -0.3633 0.4534 0.9223 34 1 -0.3633 0.5721 -0.8537 35 1 1.8934 -0.5139 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 3.8480 -0.0685 2.9347 38 1 2.2823 1.8742 -1.9983 39 1 -0.6274 3.3365 -1.1475 40 1 -0.0008 3.8879 0.4364 41 1 -4.0821 6.6119 -0.4780 42 1 -4.1447 8.2174 0.2884 43 1 -2.8910 7.8577 -0.9226 44 1 -2.7252 6.0213 2.9383 45 1 -4.0485 7.1445 2.5430 46 1 -3.9852 5.5393 1.7772 47 1 -1.1226 8.5337 0.7079 48 1 -2.3767 8.8933 1.9185 49 1 -1.0539 7.7695 2.3140 50 1 -0.8579 6.2341 -3.2932 51 1 0.6744 6.4094 -4.1912 52 1 1.5114 3.1571 -4.2569 53 1 0.3109 2.7359 -3.0086 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152285.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:26 Heat of formation + Delta-G solvation = -134.680491 kcal Electronic energy + Delta-G solvation = -32521.200937 eV Core-core repulsion = 28392.398494 eV Total energy + Delta-G solvation = -4128.802443 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.35232 -41.15274 -38.21770 -38.09973 -36.73903 -35.10364 -34.40117 -33.21828 -31.51788 -30.51263 -28.57812 -28.35881 -28.30220 -27.68876 -24.91525 -24.45475 -24.04073 -22.10278 -21.31486 -21.15347 -20.26949 -19.08225 -18.57826 -18.02783 -17.55282 -17.07989 -16.97020 -16.67886 -16.14094 -16.02393 -15.56537 -15.43741 -15.23049 -15.04146 -14.83258 -14.62247 -14.30312 -13.98224 -13.68443 -13.40460 -13.36089 -13.20755 -13.09265 -13.04428 -12.92990 -12.88041 -12.85801 -12.77501 -12.56627 -12.46027 -12.39949 -12.29191 -12.22828 -11.97529 -11.80023 -11.45600 -11.39844 -11.28923 -11.12106 -10.95339 -10.43520 -10.42199 -9.87102 -9.12301 -8.03834 -6.24422 1.00054 1.38834 1.43338 1.51107 1.66578 2.41938 2.68069 2.90496 3.16720 3.18778 3.44795 3.56038 3.74842 3.79980 3.85777 3.93473 3.94666 4.18487 4.24462 4.33923 4.45780 4.51394 4.61801 4.65290 4.66904 4.72467 4.74333 4.76167 4.76308 4.82775 4.83874 4.86931 4.96164 4.98994 5.01876 5.07160 5.13281 5.22314 5.24041 5.28132 5.33075 5.43069 5.47879 5.57137 5.67123 5.81715 6.07750 6.13388 6.21889 6.33486 6.36971 6.79828 7.03014 7.19215 7.47407 8.93481 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011100 B = 0.003597 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.861141 B = 7782.331879 C = 8689.623873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 C 0.226 3.774 4 H 0.001 0.999 5 C -0.555 4.555 6 H 0.057 0.943 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.945 3.055 10 H -0.267 1.267 11 H -0.288 1.288 12 H -0.284 1.284 13 N -0.661 5.661 14 C 0.095 3.905 15 H 0.045 0.955 16 C 0.125 3.875 17 N -0.596 5.596 18 C 0.667 3.333 19 O -0.583 6.583 20 O -0.371 6.371 21 C 0.121 3.879 22 C -0.176 4.176 23 C -0.137 4.137 24 C -0.178 4.178 25 C 0.128 3.872 26 H 0.114 0.886 27 C 0.054 3.946 28 O -0.396 6.396 29 C 0.061 3.939 30 C -0.122 4.122 31 H 0.134 0.866 32 H 0.042 0.958 33 H 0.027 0.973 34 H 0.061 0.939 35 H 0.032 0.968 36 H 0.058 0.942 37 H 0.260 0.740 38 H 0.342 0.658 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.095 0.905 43 H 0.064 0.936 44 H 0.062 0.938 45 H 0.108 0.892 46 H 0.066 0.934 47 H 0.064 0.936 48 H 0.096 0.904 49 H 0.054 0.946 50 H 0.069 0.931 51 H 0.092 0.908 52 H 0.086 0.914 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.030 12.055 -5.769 16.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.140 4.140 3 C 0.117 3.883 4 H 0.019 0.981 5 C -0.594 4.594 6 H 0.075 0.925 7 C -0.178 4.178 8 N -0.549 5.549 9 Si 0.772 3.228 10 H -0.191 1.191 11 H -0.214 1.214 12 H -0.210 1.210 13 N -0.291 5.291 14 C -0.017 4.017 15 H 0.063 0.937 16 C 0.002 3.998 17 N -0.337 5.337 18 C 0.422 3.578 19 O -0.475 6.475 20 O -0.286 6.286 21 C 0.085 3.915 22 C -0.233 4.233 23 C -0.194 4.194 24 C -0.235 4.235 25 C 0.025 3.975 26 H 0.132 0.868 27 C -0.024 4.024 28 O -0.315 6.315 29 C -0.015 4.015 30 C -0.141 4.141 31 H 0.152 0.848 32 H 0.061 0.939 33 H 0.046 0.954 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.161 0.839 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.114 0.886 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.126 0.874 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.114 0.886 49 H 0.073 0.927 50 H 0.088 0.912 51 H 0.110 0.890 52 H 0.104 0.896 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.979 12.215 -5.683 17.379 hybrid contribution 2.257 0.068 0.918 2.437 sum -8.722 12.283 -4.766 15.801 Atomic orbital electron populations 1.21587 0.96620 0.99820 1.00398 1.21347 0.94141 0.98372 1.00171 1.18926 0.91511 0.91457 0.86376 0.98140 1.22213 0.93944 1.37640 1.05604 0.92504 1.25601 1.01580 0.94968 0.95678 1.70009 1.36201 1.38797 1.09916 0.85711 0.81725 0.77540 0.77818 1.19089 1.21423 1.20956 1.60717 1.54758 1.04794 1.08869 1.22304 0.94327 0.89945 0.95151 0.93656 1.22224 0.98079 0.80049 0.99450 1.47093 1.39305 1.11374 1.35899 1.17567 0.78555 0.82720 0.78913 1.90861 1.72003 1.19246 1.65348 1.86370 1.50450 1.44941 1.46850 1.22488 0.88324 0.86169 0.94522 1.22444 0.99502 1.02376 0.98958 1.21894 0.99231 1.02761 0.95498 1.22467 1.01123 0.98143 1.01775 1.22878 0.89909 0.99246 0.85483 0.86838 1.23316 1.00468 0.85653 0.92928 1.88110 1.59515 1.19080 1.64840 1.23140 0.91357 0.92226 0.94816 1.23827 1.01546 0.92904 0.95806 0.84790 0.93927 0.95395 0.92002 0.94908 0.92352 0.93086 0.83915 0.90528 0.92078 0.92290 0.88623 0.91707 0.91902 0.87357 0.91473 0.91682 0.88573 0.92678 0.91246 0.89026 0.89614 0.89688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.79 9.84 71.99 0.71 -4.08 16 2 C -0.10 -4.52 5.45 30.60 0.17 -4.35 16 3 C 0.23 10.15 1.86 44.17 0.08 10.23 16 4 H 0.00 0.03 7.84 -2.39 -0.02 0.01 16 5 C -0.55 -27.54 8.37 25.60 0.21 -27.32 16 6 H 0.06 2.74 7.73 -2.91 -0.02 2.71 16 7 C 0.02 1.14 5.29 84.66 0.45 1.59 16 8 N -0.91 -49.95 11.29 21.45 0.24 -49.71 16 9 Si 0.95 41.45 29.54 68.60 2.03 43.48 16 10 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 11 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 13 N -0.66 -23.20 4.20 -466.45 -1.96 -25.16 16 14 C 0.09 3.03 2.78 46.26 0.13 3.16 16 15 H 0.05 1.71 7.77 -2.38 -0.02 1.69 16 16 C 0.13 4.05 6.15 86.84 0.53 4.59 16 17 N -0.60 -18.13 2.99 -915.31 -2.73 -20.87 16 18 C 0.67 21.27 7.55 129.79 0.98 22.25 16 19 O -0.58 -19.23 11.72 19.78 0.23 -18.99 16 20 O -0.37 -11.29 9.40 -55.41 -0.52 -11.81 16 21 C 0.12 2.80 1.13 -10.79 -0.01 2.79 16 22 C -0.18 -3.71 8.37 71.98 0.60 -3.11 16 23 C -0.14 -2.40 8.85 71.98 0.64 -1.77 16 24 C -0.18 -3.92 8.37 71.99 0.60 -3.32 16 25 C 0.13 3.31 3.73 46.09 0.17 3.48 16 26 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 27 C 0.05 1.34 7.34 72.28 0.53 1.87 16 28 O -0.40 -11.03 11.26 -148.98 -1.68 -12.71 16 29 C 0.06 1.52 6.39 72.25 0.46 1.98 16 30 C -0.12 -3.03 3.97 -8.97 -0.04 -3.07 16 31 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.06 2.17 7.64 -2.39 -0.02 2.15 16 35 H 0.03 1.41 8.14 -2.39 -0.02 1.40 16 36 H 0.06 3.01 5.96 -2.39 -0.01 2.99 16 37 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 38 H 0.34 11.45 7.80 -89.69 -0.70 10.75 16 39 H 0.08 2.52 7.49 -2.39 -0.02 2.50 16 40 H 0.06 2.19 8.02 -2.39 -0.02 2.17 16 41 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.06 1.69 5.88 -2.38 -0.01 1.67 16 44 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.06 1.75 5.88 -2.39 -0.01 1.73 16 48 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.07 1.96 7.34 -2.39 -0.02 1.94 16 51 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 52 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 53 H 0.09 2.40 6.04 -2.39 -0.01 2.38 16 Total: -1.00 -59.44 404.85 2.02 -57.42 By element: Atomic # 1 Polarization: 33.25 SS G_CDS: 0.19 Total: 33.43 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 6.22 Total: 4.92 kcal Atomic # 7 Polarization: -91.29 SS G_CDS: -4.45 Total: -95.73 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -1.97 Total: -43.52 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -59.44 2.02 -57.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152285.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.261 kcal (2) G-P(sol) polarization free energy of solvation -59.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds