Wall clock time and date at job start Sat Apr 11 2020 06:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47334 * 2 1 4 4 H 1.08997 * 109.47534 * 306.14521 * 3 2 1 5 5 C 1.50702 * 109.46826 * 186.14356 * 3 2 1 6 6 H 1.07999 * 120.00368 * 245.46520 * 5 3 2 7 7 C 1.37881 * 119.99740 * 65.47122 * 5 3 2 8 8 N 1.31513 * 120.00230 * 9.37075 * 7 5 3 9 9 Si 1.86802 * 119.99475 * 189.37376 * 7 5 3 10 10 H 1.48504 * 109.47177 * 84.99465 * 9 7 5 11 11 H 1.48502 * 109.46857 * 204.98978 * 9 7 5 12 12 H 1.48493 * 109.47567 * 324.98694 * 9 7 5 13 13 N 1.46897 * 109.47210 * 66.14916 * 3 2 1 14 14 C 1.47589 * 111.00054 * 276.09888 * 13 3 2 15 15 C 1.52924 * 87.79751 * 221.71111 * 14 13 3 16 16 C 1.47574 * 111.00402 * 179.97438 * 13 3 2 17 17 C 1.52799 * 113.99433 * 139.32071 * 15 14 13 18 18 N 1.47360 * 108.05135 * 181.07656 * 17 15 14 19 19 C 1.34777 * 121.06156 * 131.71882 * 18 17 15 20 20 O 1.21515 * 119.99895 * 0.02562 * 19 18 17 21 21 O 1.34636 * 119.99933 * 180.02562 * 19 18 17 22 22 C 1.45200 * 116.99955 * 179.97438 * 21 19 18 23 23 C 1.52995 * 109.47139 * 59.99649 * 22 21 19 24 24 C 1.52997 * 109.46976 * 179.97438 * 22 21 19 25 25 C 1.52997 * 109.47163 * 299.99544 * 22 21 19 26 26 C 1.47122 * 117.87397 * 311.73408 * 18 17 15 27 27 C 1.53225 * 108.73810 * 52.28640 * 26 18 17 28 28 O 1.42382 * 114.29761 * 271.67018 * 15 14 13 29 29 H 1.08996 * 109.47303 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46694 * 299.99948 * 1 2 3 31 31 H 1.09006 * 109.46543 * 59.99468 * 1 2 3 32 32 H 1.09000 * 109.46694 * 240.00051 * 2 1 3 33 33 H 1.08997 * 109.46688 * 120.00368 * 2 1 3 34 34 H 0.96996 * 120.00128 * 180.02562 * 8 7 5 35 35 H 1.09001 * 113.49782 * 336.44189 * 14 13 3 36 36 H 1.09000 * 113.50363 * 106.97691 * 14 13 3 37 37 H 1.09003 * 113.49966 * 253.01036 * 16 13 3 38 38 H 1.09000 * 113.50057 * 23.54670 * 16 13 3 39 39 H 1.09005 * 109.74196 * 300.70924 * 17 15 14 40 40 H 1.09000 * 109.74990 * 61.43317 * 17 15 14 41 41 H 1.09005 * 109.47220 * 59.99921 * 23 22 21 42 42 H 1.09001 * 109.47012 * 179.97438 * 23 22 21 43 43 H 1.09000 * 109.47333 * 300.00067 * 23 22 21 44 44 H 1.09007 * 109.47377 * 60.00212 * 24 22 21 45 45 H 1.09001 * 109.47095 * 179.97438 * 24 22 21 46 46 H 1.08997 * 109.47451 * 300.00046 * 24 22 21 47 47 H 1.08997 * 109.47355 * 60.00107 * 25 22 21 48 48 H 1.09001 * 109.47171 * 180.02562 * 25 22 21 49 49 H 1.08999 * 109.47181 * 300.00382 * 25 22 21 50 50 H 1.08994 * 109.59813 * 292.50961 * 26 18 17 51 51 H 1.09004 * 109.59032 * 172.06129 * 26 18 17 52 52 H 1.08997 * 109.49347 * 185.84785 * 27 26 18 53 53 H 1.09008 * 109.51178 * 65.78417 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5898 1.9871 -0.8298 5 6 3.5394 1.4450 -0.1521 6 1 4.1633 1.8037 0.6532 7 6 4.1147 0.9895 -1.3194 8 7 3.3614 0.7271 -2.3650 9 14 5.9641 0.7451 -1.4156 10 1 6.3142 -0.5976 -0.8866 11 1 6.4043 0.8499 -2.8301 12 1 6.6441 1.7886 -0.6071 13 7 1.6753 2.0908 1.2667 14 6 0.2980 2.6184 1.2134 15 6 0.8112 3.8663 1.9331 16 6 2.1526 3.4867 1.3030 17 6 0.2247 5.1742 1.4037 18 7 0.8231 6.2845 2.1658 19 6 1.3315 7.3638 1.5388 20 8 1.3004 7.4326 0.3260 21 8 1.8737 8.3658 2.2563 22 6 2.4023 9.4966 1.5146 23 6 1.2810 10.1379 0.6948 24 6 2.9718 10.5264 2.4923 25 6 3.5107 9.0171 0.5752 26 6 0.8482 6.1769 3.6328 27 6 1.4815 4.8356 4.0173 28 8 0.7860 3.7753 3.3537 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.7660 0.4063 -3.1861 35 1 -0.0534 2.8145 0.2004 36 1 -0.4127 2.0385 1.8022 37 1 3.0034 3.6380 1.9674 38 1 2.3064 3.9193 0.3144 39 1 0.4633 5.2831 0.3457 40 1 -0.8567 5.1747 1.5399 41 1 0.4913 10.4795 1.3640 42 1 1.6778 10.9871 0.1383 43 1 0.8749 9.4044 -0.0017 44 1 3.7707 10.0698 3.0767 45 1 3.3690 11.3751 1.9355 46 1 2.1819 10.8680 3.1612 47 1 3.1047 8.2836 -0.1213 48 1 3.9079 9.8661 0.0187 49 1 4.3096 8.5602 1.1593 50 1 -0.1694 6.2249 4.0204 51 1 1.4391 6.9928 4.0491 52 1 1.4125 4.6968 5.0962 53 1 2.5291 4.8280 3.7159 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166941.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:58 Heat of formation + Delta-G solvation = -76.245730 kcal Electronic energy + Delta-G solvation = -32391.501575 eV Core-core repulsion = 28265.233054 eV Total energy + Delta-G solvation = -4126.268522 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.12918 -40.24920 -37.86413 -36.82982 -34.93141 -33.93049 -33.83435 -31.67953 -30.38312 -28.24256 -27.59392 -27.49821 -27.20772 -25.27020 -24.49075 -23.39718 -22.61656 -21.40491 -19.56763 -19.36233 -18.92584 -18.02228 -16.86917 -16.58919 -16.24294 -16.06093 -15.55286 -15.40323 -14.80641 -14.66984 -14.50825 -14.35274 -13.99117 -13.85432 -13.63494 -13.24230 -13.06662 -12.75210 -12.62810 -12.33515 -12.28695 -12.18290 -12.04794 -11.85989 -11.65718 -11.62019 -11.51141 -11.49442 -11.42492 -11.15461 -11.02329 -10.80267 -10.60640 -10.49489 -10.42736 -10.06654 -10.00563 -9.72795 -9.55097 -9.35408 -8.82513 -8.56840 -8.42869 -7.72413 -6.05882 -4.06882 2.00143 2.81663 3.30924 3.37060 3.40006 3.66084 3.70500 4.40600 4.54977 4.59232 4.63851 4.73612 4.74499 4.86687 4.96134 4.99953 5.22504 5.27028 5.27729 5.31576 5.37539 5.50560 5.52306 5.58397 5.60176 5.71769 5.72611 5.78119 5.80398 5.86373 6.00850 6.11567 6.16593 6.17561 6.21825 6.29109 6.31087 6.35081 6.39743 6.43552 6.52402 6.71690 6.95687 7.10955 7.28375 7.35433 7.39921 7.49185 7.79497 7.96111 8.21727 8.29342 8.45464 8.99294 9.57100 11.03151 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011503 B = 0.003553 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.598202 B = 7878.813140 C = 9243.778444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.101 4.101 3 C 0.183 3.817 4 H 0.016 0.984 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.891 3.109 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.454 5.454 14 C 0.021 3.979 15 C 0.060 3.940 16 C 0.010 3.990 17 C 0.118 3.882 18 N -0.595 5.595 19 C 0.655 3.345 20 O -0.563 6.563 21 O -0.364 6.364 22 C 0.136 3.864 23 C -0.183 4.183 24 C -0.139 4.139 25 C -0.185 4.185 26 C 0.079 3.921 27 C 0.046 3.954 28 O -0.338 6.338 29 H 0.033 0.967 30 H 0.050 0.950 31 H 0.041 0.959 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.261 0.739 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.107 0.893 40 H 0.077 0.923 41 H 0.057 0.943 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.065 0.935 47 H 0.090 0.910 48 H 0.069 0.931 49 H 0.060 0.940 50 H 0.077 0.923 51 H 0.098 0.902 52 H 0.106 0.894 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.873 16.997 10.892 21.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.140 4.140 3 C 0.076 3.924 4 H 0.034 0.966 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.137 4.137 8 N -0.526 5.526 9 Si 0.719 3.281 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.177 5.177 14 C -0.109 4.109 15 C 0.019 3.981 16 C -0.120 4.120 17 C -0.004 4.004 18 N -0.337 5.337 19 C 0.410 3.590 20 O -0.452 6.452 21 O -0.279 6.279 22 C 0.099 3.901 23 C -0.240 4.240 24 C -0.197 4.197 25 C -0.242 4.242 26 C -0.044 4.044 27 C -0.032 4.032 28 O -0.256 6.256 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.126 0.874 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.084 0.916 47 H 0.109 0.891 48 H 0.088 0.912 49 H 0.079 0.921 50 H 0.095 0.905 51 H 0.116 0.884 52 H 0.124 0.876 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.699 16.376 10.889 20.475 hybrid contribution 1.030 0.535 -1.013 1.541 sum -4.669 16.911 9.876 20.133 Atomic orbital electron populations 1.22041 0.99212 0.99551 1.00471 1.21417 0.91879 0.99318 1.01353 1.19855 0.96037 0.91696 0.84802 0.96614 1.21031 0.90794 1.42763 1.00381 0.92267 1.24903 0.98015 0.95502 0.95309 1.69959 1.35298 1.45180 1.02146 0.86623 0.85739 0.78767 0.76965 1.20491 1.21366 1.20047 1.69012 1.01354 1.11212 1.36126 1.23880 0.96550 0.92058 0.98374 1.22863 0.99152 0.93818 0.82276 1.23920 0.95782 0.92139 1.00118 1.22265 0.97327 0.83090 0.97721 1.46968 1.61657 1.17708 1.07322 1.17895 0.77058 0.80203 0.83831 1.90914 1.61918 1.79988 1.12382 1.86259 1.71931 1.28789 1.40944 1.22057 0.93576 0.82803 0.91638 1.22513 0.98244 1.02111 1.01143 1.21851 1.01465 0.97213 0.99137 1.22526 0.97897 1.03303 1.00490 1.22401 1.02576 0.99798 0.79647 1.22941 0.96317 0.85942 0.97959 1.87938 1.74611 1.46663 1.16354 0.94827 0.93108 0.94022 0.90757 0.93813 0.92905 0.90539 0.89475 0.90955 0.90622 0.87440 0.90447 0.92346 0.91210 0.89291 0.91459 0.90206 0.91603 0.89145 0.91221 0.92068 0.90515 0.88373 0.87619 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 9.17 37.16 0.34 -2.71 16 2 C -0.10 -2.40 5.50 -26.73 -0.15 -2.54 16 3 C 0.18 4.53 1.22 -68.87 -0.08 4.44 16 4 H 0.02 0.44 7.47 -51.93 -0.39 0.05 16 5 C -0.51 -14.03 7.93 -34.44 -0.27 -14.31 16 6 H 0.06 1.66 7.58 -52.49 -0.40 1.26 16 7 C 0.07 1.80 5.15 -17.82 -0.09 1.71 16 8 N -0.89 -25.33 12.16 55.43 0.67 -24.65 16 9 Si 0.89 21.54 29.55 -169.99 -5.02 16.52 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 13 N -0.45 -9.76 6.11 -237.87 -1.45 -11.21 16 14 C 0.02 0.37 4.97 -7.24 -0.04 0.33 16 15 C 0.06 0.98 1.28 -90.77 -0.12 0.86 16 16 C 0.01 0.20 5.93 -7.22 -0.04 0.15 16 17 C 0.12 1.70 5.83 -3.68 -0.02 1.68 16 18 N -0.60 -8.11 3.03 -178.27 -0.54 -8.65 16 19 C 0.66 9.69 7.76 54.06 0.42 10.11 16 20 O -0.56 -9.64 11.38 -19.28 -0.22 -9.86 16 21 O -0.36 -4.64 8.58 -40.31 -0.35 -4.98 16 22 C 0.14 1.46 1.13 -90.63 -0.10 1.36 16 23 C -0.18 -1.89 8.37 37.15 0.31 -1.58 16 24 C -0.14 -1.07 8.85 37.16 0.33 -0.74 16 25 C -0.19 -2.14 8.37 37.16 0.31 -1.83 16 26 C 0.08 0.84 6.61 -3.59 -0.02 0.82 16 27 C 0.05 0.55 6.90 37.27 0.26 0.81 16 28 O -0.34 -5.25 10.54 -35.23 -0.37 -5.62 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.92 5.12 -51.93 -0.27 0.66 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.95 6.78 -51.93 -0.35 1.60 16 33 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.08 1.34 7.48 -51.93 -0.39 0.95 16 36 H 0.09 1.46 6.87 -51.93 -0.36 1.10 16 37 H 0.07 1.47 7.35 -51.93 -0.38 1.08 16 38 H 0.08 1.64 7.68 -51.93 -0.40 1.24 16 39 H 0.11 1.72 6.89 -51.93 -0.36 1.36 16 40 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.09 1.16 5.88 -51.93 -0.31 0.85 16 44 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.09 1.32 5.88 -51.93 -0.31 1.01 16 48 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.10 0.92 6.99 -51.93 -0.36 0.56 16 52 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 53 H 0.06 0.77 7.29 -51.92 -0.38 0.39 16 LS Contribution 401.02 15.07 6.04 6.04 Total: -1.00 -30.92 401.02 -9.47 -40.39 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -9.27 Total: 3.46 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 1.03 Total: -1.43 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: -1.32 Total: -44.51 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.94 Total: -20.46 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.92 -9.47 -40.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166941.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.856 kcal (2) G-P(sol) polarization free energy of solvation -30.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds