Wall clock time and date at job start Sat Apr 11 2020 06:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47334 * 2 1 4 4 H 1.08997 * 109.47534 * 306.14521 * 3 2 1 5 5 C 1.50702 * 109.46826 * 186.14356 * 3 2 1 6 6 H 1.07999 * 120.00368 * 245.46520 * 5 3 2 7 7 C 1.37881 * 119.99740 * 65.47122 * 5 3 2 8 8 N 1.31513 * 120.00230 * 9.37075 * 7 5 3 9 9 Si 1.86802 * 119.99475 * 189.37376 * 7 5 3 10 10 H 1.48504 * 109.47177 * 84.99465 * 9 7 5 11 11 H 1.48502 * 109.46857 * 204.98978 * 9 7 5 12 12 H 1.48493 * 109.47567 * 324.98694 * 9 7 5 13 13 N 1.46897 * 109.47210 * 66.14916 * 3 2 1 14 14 C 1.47589 * 111.00054 * 276.09888 * 13 3 2 15 15 C 1.52924 * 87.79751 * 221.71111 * 14 13 3 16 16 C 1.47574 * 111.00402 * 179.97438 * 13 3 2 17 17 C 1.52799 * 113.99433 * 139.32071 * 15 14 13 18 18 N 1.47360 * 108.05135 * 181.07656 * 17 15 14 19 19 C 1.34777 * 121.06156 * 131.71882 * 18 17 15 20 20 O 1.21515 * 119.99895 * 0.02562 * 19 18 17 21 21 O 1.34636 * 119.99933 * 180.02562 * 19 18 17 22 22 C 1.45200 * 116.99955 * 179.97438 * 21 19 18 23 23 C 1.52995 * 109.47139 * 59.99649 * 22 21 19 24 24 C 1.52997 * 109.46976 * 179.97438 * 22 21 19 25 25 C 1.52997 * 109.47163 * 299.99544 * 22 21 19 26 26 C 1.47122 * 117.87397 * 311.73408 * 18 17 15 27 27 C 1.53225 * 108.73810 * 52.28640 * 26 18 17 28 28 O 1.42382 * 114.29761 * 271.67018 * 15 14 13 29 29 H 1.08996 * 109.47303 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46694 * 299.99948 * 1 2 3 31 31 H 1.09006 * 109.46543 * 59.99468 * 1 2 3 32 32 H 1.09000 * 109.46694 * 240.00051 * 2 1 3 33 33 H 1.08997 * 109.46688 * 120.00368 * 2 1 3 34 34 H 0.96996 * 120.00128 * 180.02562 * 8 7 5 35 35 H 1.09001 * 113.49782 * 336.44189 * 14 13 3 36 36 H 1.09000 * 113.50363 * 106.97691 * 14 13 3 37 37 H 1.09003 * 113.49966 * 253.01036 * 16 13 3 38 38 H 1.09000 * 113.50057 * 23.54670 * 16 13 3 39 39 H 1.09005 * 109.74196 * 300.70924 * 17 15 14 40 40 H 1.09000 * 109.74990 * 61.43317 * 17 15 14 41 41 H 1.09005 * 109.47220 * 59.99921 * 23 22 21 42 42 H 1.09001 * 109.47012 * 179.97438 * 23 22 21 43 43 H 1.09000 * 109.47333 * 300.00067 * 23 22 21 44 44 H 1.09007 * 109.47377 * 60.00212 * 24 22 21 45 45 H 1.09001 * 109.47095 * 179.97438 * 24 22 21 46 46 H 1.08997 * 109.47451 * 300.00046 * 24 22 21 47 47 H 1.08997 * 109.47355 * 60.00107 * 25 22 21 48 48 H 1.09001 * 109.47171 * 180.02562 * 25 22 21 49 49 H 1.08999 * 109.47181 * 300.00382 * 25 22 21 50 50 H 1.08994 * 109.59813 * 292.50961 * 26 18 17 51 51 H 1.09004 * 109.59032 * 172.06129 * 26 18 17 52 52 H 1.08997 * 109.49347 * 185.84785 * 27 26 18 53 53 H 1.09008 * 109.51178 * 65.78417 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5898 1.9871 -0.8298 5 6 3.5394 1.4450 -0.1521 6 1 4.1633 1.8037 0.6532 7 6 4.1147 0.9895 -1.3194 8 7 3.3614 0.7271 -2.3650 9 14 5.9641 0.7451 -1.4156 10 1 6.3142 -0.5976 -0.8866 11 1 6.4043 0.8499 -2.8301 12 1 6.6441 1.7886 -0.6071 13 7 1.6753 2.0908 1.2667 14 6 0.2980 2.6184 1.2134 15 6 0.8112 3.8663 1.9331 16 6 2.1526 3.4867 1.3030 17 6 0.2247 5.1742 1.4037 18 7 0.8231 6.2845 2.1658 19 6 1.3315 7.3638 1.5388 20 8 1.3004 7.4326 0.3260 21 8 1.8737 8.3658 2.2563 22 6 2.4023 9.4966 1.5146 23 6 1.2810 10.1379 0.6948 24 6 2.9718 10.5264 2.4923 25 6 3.5107 9.0171 0.5752 26 6 0.8482 6.1769 3.6328 27 6 1.4815 4.8356 4.0173 28 8 0.7860 3.7753 3.3537 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.7660 0.4063 -3.1861 35 1 -0.0534 2.8145 0.2004 36 1 -0.4127 2.0385 1.8022 37 1 3.0034 3.6380 1.9674 38 1 2.3064 3.9193 0.3144 39 1 0.4633 5.2831 0.3457 40 1 -0.8567 5.1747 1.5399 41 1 0.4913 10.4795 1.3640 42 1 1.6778 10.9871 0.1383 43 1 0.8749 9.4044 -0.0017 44 1 3.7707 10.0698 3.0767 45 1 3.3690 11.3751 1.9355 46 1 2.1819 10.8680 3.1612 47 1 3.1047 8.2836 -0.1213 48 1 3.9079 9.8661 0.0187 49 1 4.3096 8.5602 1.1593 50 1 -0.1694 6.2249 4.0204 51 1 1.4391 6.9928 4.0491 52 1 1.4125 4.6968 5.0962 53 1 2.5291 4.8280 3.7159 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166941.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:57 Heat of formation + Delta-G solvation = -97.767084 kcal Electronic energy + Delta-G solvation = -32392.434811 eV Core-core repulsion = 28265.233054 eV Total energy + Delta-G solvation = -4127.201758 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.34189 -41.51333 -39.12727 -37.97838 -36.15847 -35.63235 -34.81297 -33.62995 -31.67391 -29.69652 -28.69984 -28.38021 -28.28591 -26.84473 -26.18100 -24.60900 -24.10031 -22.60440 -21.31209 -20.57125 -20.14358 -19.09534 -18.55950 -17.90165 -17.50732 -17.43527 -17.02395 -16.44010 -16.25828 -16.06841 -15.67688 -15.55656 -15.25614 -15.20551 -14.83185 -14.58223 -14.42301 -14.15839 -13.85223 -13.54242 -13.42156 -13.33777 -13.16877 -13.11713 -13.07482 -12.88653 -12.86930 -12.75636 -12.65131 -12.52525 -12.50385 -12.36249 -12.16662 -11.97590 -11.70747 -11.58778 -11.41062 -11.17372 -11.00680 -10.92436 -10.76011 -10.56312 -9.78006 -9.43772 -8.20122 -6.27468 0.97474 1.35320 1.36895 1.45525 1.69264 2.37203 2.48311 2.71310 3.10211 3.25290 3.38648 3.60910 3.74227 3.79072 3.85424 3.94302 4.03849 4.22058 4.30904 4.39638 4.45015 4.51542 4.54836 4.55663 4.58283 4.60365 4.61758 4.66331 4.71137 4.75622 4.78712 4.80875 4.83373 4.87980 4.88458 4.91911 5.04922 5.10246 5.17312 5.23514 5.27646 5.31546 5.35196 5.43267 5.47293 5.55808 5.68323 6.00112 6.16429 6.21307 6.23917 6.49964 6.85450 7.19504 7.39918 8.88314 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011503 B = 0.003553 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.598202 B = 7878.813140 C = 9243.778444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 C 0.192 3.808 4 H -0.017 1.017 5 C -0.529 4.529 6 H 0.046 0.954 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 0.950 3.050 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.274 1.274 13 N -0.468 5.468 14 C 0.023 3.977 15 C 0.089 3.911 16 C 0.007 3.993 17 C 0.124 3.876 18 N -0.598 5.598 19 C 0.650 3.350 20 O -0.594 6.594 21 O -0.360 6.360 22 C 0.125 3.875 23 C -0.178 4.178 24 C -0.133 4.133 25 C -0.183 4.183 26 C 0.081 3.919 27 C 0.041 3.959 28 O -0.348 6.348 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.043 0.957 33 H 0.036 0.964 34 H 0.263 0.737 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.061 0.939 38 H 0.047 0.953 39 H 0.085 0.915 40 H 0.106 0.894 41 H 0.068 0.932 42 H 0.090 0.910 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.101 0.899 46 H 0.076 0.924 47 H 0.053 0.947 48 H 0.092 0.908 49 H 0.057 0.943 50 H 0.101 0.899 51 H 0.115 0.885 52 H 0.142 0.858 53 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.562 18.524 13.230 23.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.135 4.135 3 C 0.084 3.916 4 H 0.001 0.999 5 C -0.567 4.567 6 H 0.064 0.936 7 C -0.180 4.180 8 N -0.552 5.552 9 Si 0.775 3.225 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.199 1.199 13 N -0.190 5.190 14 C -0.107 4.107 15 C 0.047 3.953 16 C -0.123 4.123 17 C 0.002 3.998 18 N -0.339 5.339 19 C 0.405 3.595 20 O -0.485 6.485 21 O -0.275 6.275 22 C 0.089 3.911 23 C -0.236 4.236 24 C -0.189 4.189 25 C -0.241 4.241 26 C -0.040 4.040 27 C -0.035 4.035 28 O -0.266 6.266 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.124 0.876 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.103 0.897 40 H 0.124 0.876 41 H 0.087 0.913 42 H 0.109 0.891 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.120 0.880 46 H 0.095 0.905 47 H 0.072 0.928 48 H 0.110 0.890 49 H 0.076 0.924 50 H 0.119 0.881 51 H 0.133 0.867 52 H 0.160 0.840 53 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -6.387 17.914 13.265 23.188 hybrid contribution 1.289 0.121 -1.695 2.133 sum -5.099 18.035 11.570 22.026 Atomic orbital electron populations 1.21908 0.95800 1.01182 1.01181 1.21269 0.94940 0.97949 0.99369 1.19614 0.94415 0.92289 0.85256 0.99892 1.21297 0.92471 1.42796 1.00133 0.93619 1.25612 1.02120 0.95256 0.94990 1.70061 1.36900 1.45774 1.02495 0.85703 0.80849 0.78789 0.77127 1.19751 1.20704 1.19877 1.68933 1.04079 1.12069 1.33931 1.23885 0.94809 0.92911 0.99051 1.22454 0.95675 0.94139 0.83001 1.23829 0.97856 0.91681 0.98887 1.22093 0.98696 0.82485 0.96574 1.47072 1.61218 1.17048 1.08596 1.18095 0.76960 0.80808 0.83602 1.90912 1.62977 1.80705 1.13899 1.86270 1.71549 1.28804 1.40849 1.22425 0.93366 0.82759 0.92535 1.22461 0.98425 1.01857 1.00821 1.21868 1.01700 0.96635 0.98740 1.22496 0.98086 1.03261 1.00208 1.22596 1.04252 0.99489 0.77673 1.23233 0.95103 0.85680 0.99523 1.87916 1.74933 1.48498 1.15280 0.92733 0.91364 0.94276 0.93860 0.94506 0.92832 0.90538 0.87631 0.92094 0.93513 0.89699 0.87643 0.91338 0.89118 0.92442 0.91294 0.88040 0.90526 0.92781 0.88963 0.92395 0.88056 0.86703 0.84009 0.94039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.52 9.17 71.98 0.66 -4.86 16 2 C -0.10 -4.68 5.50 30.59 0.17 -4.51 16 3 C 0.19 9.88 1.22 44.17 0.05 9.94 16 4 H -0.02 -0.94 7.47 -2.39 -0.02 -0.96 16 5 C -0.53 -30.23 7.93 25.60 0.20 -30.03 16 6 H 0.05 2.67 7.58 -2.91 -0.02 2.65 16 7 C 0.02 1.14 5.15 84.66 0.44 1.58 16 8 N -0.91 -53.86 12.16 21.45 0.26 -53.60 16 9 Si 0.95 45.20 29.55 68.60 2.03 47.23 16 10 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 12 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 13 N -0.47 -20.55 6.11 -907.23 -5.54 -26.10 16 14 C 0.02 0.79 4.97 83.71 0.42 1.21 16 15 C 0.09 2.85 1.28 -10.89 -0.01 2.84 16 16 C 0.01 0.30 5.93 83.73 0.50 0.80 16 17 C 0.12 3.52 5.83 86.15 0.50 4.02 16 18 N -0.60 -15.74 3.03 -948.32 -2.87 -18.62 16 19 C 0.65 19.23 7.76 129.79 1.01 20.24 16 20 O -0.59 -21.24 11.38 19.79 0.23 -21.01 16 21 O -0.36 -8.79 8.58 -55.45 -0.48 -9.26 16 22 C 0.13 2.55 1.13 -10.80 -0.01 2.53 16 23 C -0.18 -3.50 8.37 71.98 0.60 -2.90 16 24 C -0.13 -1.66 8.85 71.98 0.64 -1.02 16 25 C -0.18 -4.23 8.37 71.98 0.60 -3.62 16 26 C 0.08 1.52 6.61 86.34 0.57 2.09 16 27 C 0.04 0.89 6.90 72.06 0.50 1.39 16 28 O -0.35 -10.14 10.54 -148.98 -1.57 -11.71 16 29 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.07 2.37 5.12 -2.39 -0.01 2.35 16 31 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 32 H 0.04 2.34 6.78 -2.39 -0.02 2.32 16 33 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 35 H 0.08 2.70 7.48 -2.39 -0.02 2.69 16 36 H 0.11 3.32 6.87 -2.39 -0.02 3.30 16 37 H 0.06 2.60 7.35 -2.39 -0.02 2.58 16 38 H 0.05 2.19 7.68 -2.39 -0.02 2.17 16 39 H 0.08 2.83 6.89 -2.38 -0.02 2.82 16 40 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.06 1.53 5.88 -2.39 -0.01 1.51 16 44 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 45 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.05 1.66 5.88 -2.39 -0.01 1.65 16 48 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 49 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 50 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 51 H 0.11 1.80 6.99 -2.38 -0.02 1.79 16 52 H 0.14 2.05 8.14 -2.39 -0.02 2.03 16 53 H 0.04 1.04 7.29 -2.38 -0.02 1.03 16 Total: -1.00 -70.76 401.02 -0.24 -71.00 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.88 Total: 22.39 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: 6.83 Total: -0.32 kcal Atomic # 7 Polarization: -90.16 SS G_CDS: -8.15 Total: -98.32 kcal Atomic # 8 Polarization: -40.17 SS G_CDS: -1.82 Total: -41.99 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -70.76 -0.24 -71.00 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166941.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.765 kcal (2) G-P(sol) polarization free energy of solvation -70.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds