Wall clock time and date at job start Sat Apr 11 2020 06:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47214 * 2 1 4 4 H 1.09000 * 109.47175 * 54.99354 * 3 2 1 5 5 C 1.50703 * 109.47157 * 174.99617 * 3 2 1 6 6 H 1.07997 * 119.99578 * 119.99551 * 5 3 2 7 7 C 1.37871 * 119.99597 * 299.99755 * 5 3 2 8 8 N 1.31509 * 120.00340 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99557 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47029 * 59.99991 * 9 7 5 11 11 H 1.48496 * 109.46945 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.46994 * 300.00022 * 9 7 5 13 13 N 1.46906 * 109.46907 * 294.99551 * 3 2 1 14 14 C 1.46835 * 111.00032 * 175.00126 * 13 3 2 15 15 C 1.53605 * 109.23365 * 186.12182 * 14 13 3 16 16 H 1.08997 * 111.13479 * 181.59945 * 15 14 13 17 17 C 1.53652 * 108.28901 * 58.35345 * 15 14 13 18 18 O 1.42908 * 109.09020 * 299.96862 * 17 15 14 19 19 C 1.42910 * 114.75938 * 298.96326 * 18 17 15 20 20 C 1.53645 * 109.10795 * 61.02596 * 19 18 17 21 21 H 1.09000 * 111.13831 * 183.31602 * 20 19 18 22 22 C 1.46848 * 110.99826 * 300.03699 * 13 3 2 23 23 N 1.48032 * 107.12146 * 303.20611 * 15 14 13 24 24 C 1.34781 * 122.53206 * 238.41443 * 23 15 14 25 25 O 1.21503 * 119.99920 * 0.02562 * 24 23 15 26 26 O 1.34644 * 119.99587 * 179.97438 * 24 23 15 27 27 C 1.45194 * 116.99252 * 179.97438 * 26 24 23 28 28 C 1.52996 * 109.47790 * 60.00498 * 27 26 24 29 29 C 1.53001 * 109.46733 * 180.02562 * 27 26 24 30 30 C 1.53001 * 109.47514 * 299.99641 * 27 26 24 31 31 H 1.09006 * 109.46920 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47498 * 300.00552 * 1 2 3 33 33 H 1.09005 * 109.46330 * 60.00839 * 1 2 3 34 34 H 1.08998 * 109.47498 * 239.99447 * 2 1 3 35 35 H 1.09006 * 109.46813 * 119.99376 * 2 1 3 36 36 H 0.97002 * 119.99874 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.51221 * 306.04599 * 14 13 3 38 38 H 1.08996 * 109.51138 * 66.14494 * 14 13 3 39 39 H 1.08995 * 109.53816 * 59.85728 * 17 15 14 40 40 H 1.09004 * 109.53287 * 180.08769 * 17 15 14 41 41 H 1.09000 * 109.53345 * 301.13363 * 19 18 17 42 42 H 1.09007 * 109.58873 * 180.94909 * 19 18 17 43 43 H 1.09002 * 109.51078 * 293.78140 * 22 13 3 44 44 H 1.09003 * 109.51489 * 53.93879 * 22 13 3 45 45 H 1.09001 * 109.47347 * 59.99160 * 28 27 26 46 46 H 1.08997 * 109.47718 * 179.97438 * 28 27 26 47 47 H 1.09009 * 109.46662 * 299.99593 * 28 27 26 48 48 H 1.09002 * 109.47261 * 59.99726 * 29 27 26 49 49 H 1.09000 * 109.47660 * 180.02562 * 29 27 26 50 50 H 1.09004 * 109.47061 * 300.00209 * 29 27 26 51 51 H 1.09002 * 109.46635 * 60.00877 * 30 27 26 52 52 H 1.08997 * 109.47374 * 180.02562 * 30 27 26 53 53 H 1.08994 * 109.47431 * 300.00779 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5420 1.4443 0.1239 6 1 4.1473 1.8887 -0.6522 7 6 4.1432 0.8784 1.2281 8 7 3.4060 0.3376 2.1734 9 14 6.0049 0.8800 1.3814 10 1 6.5004 2.2799 1.3810 11 1 6.3976 0.2168 2.6507 12 1 6.5966 0.1451 0.2347 13 7 1.6515 2.0992 -1.2553 14 6 2.0208 3.5203 -1.2420 15 6 1.4626 4.2000 -2.5013 16 1 1.7433 5.2526 -2.5370 17 6 -0.0625 4.0138 -2.5139 18 8 -0.3627 2.6167 -2.5326 19 6 0.1337 1.9130 -3.6731 20 6 1.6660 2.0220 -3.7036 21 1 2.0764 1.5452 -4.5937 22 6 2.2197 1.3981 -2.4138 23 7 1.9994 3.4639 -3.6681 24 6 2.7356 4.0615 -4.6260 25 8 2.9819 5.2489 -4.5507 26 8 3.1990 3.3423 -5.6657 27 6 3.9843 4.0517 -6.6598 28 6 5.2219 4.6575 -5.9949 29 6 4.4193 3.0773 -7.7562 30 6 3.1387 5.1678 -7.2763 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3632 0.5137 -0.8901 34 1 1.8935 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8901 36 1 3.8291 -0.0602 2.9505 37 1 1.6025 3.9968 -0.3554 38 1 3.1066 3.6141 -1.2277 39 1 -0.4925 4.4671 -1.6208 40 1 -0.4803 4.4882 -3.4020 41 1 -0.2810 2.3514 -4.5808 42 1 -0.1558 0.8640 -3.6098 43 1 3.3055 1.4930 -2.4002 44 1 1.9450 0.3440 -2.3721 45 1 5.8244 3.8624 -5.5557 46 1 5.8117 5.1897 -6.7413 47 1 4.9116 5.3519 -5.2140 48 1 3.5374 2.6460 -8.2299 49 1 5.0092 3.6096 -8.5024 50 1 5.0216 2.2818 -7.3173 51 1 2.8285 5.8621 -6.4954 52 1 3.7280 5.7000 -8.0229 53 1 2.2570 4.7362 -7.7500 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167004.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:09 Heat of formation + Delta-G solvation = -112.469633 kcal Electronic energy + Delta-G solvation = -33632.189355 eV Core-core repulsion = 29504.350047 eV Total energy + Delta-G solvation = -4127.839308 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.22267 -40.93030 -38.20414 -37.87300 -36.01247 -35.06690 -34.16166 -33.76149 -32.67788 -29.53534 -28.38110 -28.29389 -27.91568 -27.51151 -25.53996 -24.37522 -23.64306 -23.50744 -21.17161 -21.01044 -19.76298 -19.07313 -17.84191 -17.79519 -17.23984 -17.08386 -16.85802 -16.41101 -16.25646 -15.97810 -15.67607 -15.47260 -15.28797 -15.19496 -14.87269 -14.50098 -14.25823 -14.05433 -13.66569 -13.38113 -13.28516 -13.18690 -13.03230 -12.95226 -12.88231 -12.86009 -12.74783 -12.72010 -12.49782 -12.42790 -12.30828 -12.16293 -12.05604 -11.96253 -11.52565 -11.44900 -11.39568 -11.18289 -11.02555 -10.90457 -10.74580 -10.40540 -9.61599 -8.71725 -7.99543 -6.24805 1.03207 1.32451 1.34694 1.40965 1.73463 2.37575 2.72503 3.06116 3.14761 3.41557 3.74062 3.76503 3.79548 3.91052 3.94124 3.96852 4.09172 4.22412 4.41225 4.46286 4.54533 4.56836 4.60518 4.68514 4.72307 4.75005 4.76417 4.77370 4.83335 4.86912 4.87176 4.90271 4.99285 5.04277 5.05143 5.08520 5.11324 5.26815 5.28211 5.33583 5.40392 5.46143 5.54025 5.58900 5.68515 5.87950 6.11211 6.22164 6.34012 6.42930 6.50626 6.69893 6.97796 7.23979 7.45770 8.90848 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011721 B = 0.004424 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.333081 B = 6327.515166 C = 7701.201526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.102 4.102 3 C 0.224 3.776 4 H 0.006 0.994 5 C -0.550 4.550 6 H 0.036 0.964 7 C 0.029 3.971 8 N -0.905 5.905 9 Si 0.935 3.065 10 H -0.282 1.282 11 H -0.280 1.280 12 H -0.277 1.277 13 N -0.493 5.493 14 C 0.063 3.937 15 C 0.128 3.872 16 H 0.110 0.890 17 C 0.075 3.925 18 O -0.353 6.353 19 C 0.071 3.929 20 C 0.110 3.890 21 H 0.121 0.879 22 C 0.063 3.937 23 N -0.595 5.595 24 C 0.654 3.346 25 O -0.595 6.595 26 O -0.367 6.367 27 C 0.123 3.877 28 C -0.180 4.180 29 C -0.134 4.134 30 C -0.175 4.175 31 H 0.040 0.960 32 H 0.026 0.974 33 H 0.069 0.931 34 H 0.034 0.966 35 H 0.057 0.943 36 H 0.261 0.739 37 H 0.077 0.923 38 H 0.002 0.998 39 H 0.115 0.885 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.116 0.884 43 H 0.003 0.997 44 H 0.087 0.913 45 H 0.050 0.950 46 H 0.094 0.906 47 H 0.057 0.943 48 H 0.074 0.926 49 H 0.104 0.896 50 H 0.062 0.938 51 H 0.059 0.941 52 H 0.092 0.908 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.746 4.937 -19.144 20.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.140 4.140 3 C 0.117 3.883 4 H 0.023 0.977 5 C -0.589 4.589 6 H 0.054 0.946 7 C -0.171 4.171 8 N -0.544 5.544 9 Si 0.762 3.238 10 H -0.208 1.208 11 H -0.205 1.205 12 H -0.202 1.202 13 N -0.216 5.216 14 C -0.066 4.066 15 C 0.026 3.974 16 H 0.128 0.872 17 C -0.003 4.003 18 O -0.270 6.270 19 C -0.007 4.007 20 C 0.007 3.993 21 H 0.139 0.861 22 C -0.067 4.067 23 N -0.336 5.336 24 C 0.410 3.590 25 O -0.487 6.487 26 O -0.282 6.282 27 C 0.087 3.913 28 C -0.238 4.238 29 C -0.191 4.191 30 C -0.232 4.232 31 H 0.059 0.941 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.020 0.980 39 H 0.133 0.867 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.134 0.866 43 H 0.021 0.979 44 H 0.105 0.895 45 H 0.069 0.931 46 H 0.113 0.887 47 H 0.076 0.924 48 H 0.093 0.907 49 H 0.123 0.877 50 H 0.081 0.919 51 H 0.078 0.922 52 H 0.111 0.889 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.217 5.090 -18.922 20.278 hybrid contribution 2.780 0.276 0.738 2.890 sum -2.437 5.366 -18.184 19.115 Atomic orbital electron populations 1.21556 0.95840 0.99444 1.01217 1.21415 0.94776 0.97681 1.00160 1.19023 0.90886 0.91846 0.86526 0.97657 1.21906 0.94549 1.37561 1.04884 0.94568 1.25458 1.00900 0.95089 0.95679 1.69971 1.35922 1.38827 1.09647 0.85985 0.82593 0.77815 0.77405 1.20833 1.20494 1.20249 1.62226 1.56839 1.00113 1.02399 1.22206 0.96408 0.91263 0.96769 1.22660 0.96003 0.96526 0.82188 0.87227 1.22816 0.90814 0.83788 1.02892 1.88020 1.75514 1.19705 1.43752 1.22883 0.89846 0.99044 0.88938 1.22848 0.98402 0.79231 0.98851 0.86106 1.22268 0.95234 0.98998 0.90182 1.47759 1.52743 1.10985 1.22097 1.18016 0.77678 0.83301 0.80036 1.90845 1.63142 1.15421 1.79314 1.86302 1.66104 1.42901 1.32867 1.22432 0.89627 0.93199 0.86034 1.22474 0.97209 1.01581 1.02491 1.21874 1.02635 0.98688 0.95886 1.22432 1.00565 0.98398 1.01805 0.94069 0.95435 0.91188 0.94761 0.92416 0.92921 0.90479 0.97979 0.86749 0.92427 0.92338 0.86562 0.97900 0.89474 0.93070 0.88688 0.92406 0.90686 0.87749 0.91858 0.92158 0.88944 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.71 9.80 71.98 0.71 -4.00 16 2 C -0.10 -4.65 5.04 30.60 0.15 -4.50 16 3 C 0.22 10.83 1.75 44.17 0.08 10.90 16 4 H 0.01 0.30 8.08 -2.39 -0.02 0.28 16 5 C -0.55 -29.66 7.20 25.60 0.18 -29.47 16 6 H 0.04 2.04 5.90 -2.91 -0.02 2.02 16 7 C 0.03 1.60 5.29 84.65 0.45 2.05 16 8 N -0.90 -51.15 11.29 21.44 0.24 -50.91 16 9 Si 0.94 44.24 29.54 68.60 2.03 46.26 16 10 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 N -0.49 -19.46 2.21 -873.21 -1.93 -21.38 16 14 C 0.06 2.44 4.70 86.52 0.41 2.85 16 15 C 0.13 4.00 3.72 45.12 0.17 4.17 16 16 H 0.11 3.41 7.29 -2.39 -0.02 3.39 16 17 C 0.07 1.95 6.40 72.20 0.46 2.41 16 18 O -0.35 -10.17 8.70 -148.98 -1.30 -11.46 16 19 C 0.07 1.73 6.40 72.20 0.46 2.19 16 20 C 0.11 3.15 3.74 45.12 0.17 3.32 16 21 H 0.12 3.09 7.23 -2.39 -0.02 3.07 16 22 C 0.06 2.29 4.39 86.52 0.38 2.67 16 23 N -0.59 -18.69 2.54 -892.17 -2.27 -20.96 16 24 C 0.65 21.33 7.82 129.79 1.01 22.35 16 25 O -0.60 -21.41 11.54 19.83 0.23 -21.18 16 26 O -0.37 -10.45 8.78 -55.54 -0.49 -10.93 16 27 C 0.12 2.76 1.13 -10.79 -0.01 2.74 16 28 C -0.18 -4.32 8.37 71.98 0.60 -3.72 16 29 C -0.13 -2.04 8.85 71.98 0.64 -1.41 16 30 C -0.17 -3.55 8.37 71.98 0.60 -2.94 16 31 H 0.04 1.39 8.14 -2.38 -0.02 1.38 16 32 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 2.51 7.53 -2.38 -0.02 2.49 16 34 H 0.03 1.51 6.03 -2.39 -0.01 1.49 16 35 H 0.06 3.04 5.95 -2.38 -0.01 3.02 16 36 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 37 H 0.08 2.95 8.07 -2.39 -0.02 2.93 16 38 H 0.00 0.09 6.98 -2.39 -0.02 0.07 16 39 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 40 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.12 2.49 8.14 -2.38 -0.02 2.47 16 43 H 0.00 0.12 6.69 -2.39 -0.02 0.11 16 44 H 0.09 3.14 5.90 -2.39 -0.01 3.13 16 45 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.06 1.76 5.88 -2.38 -0.01 1.75 16 48 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 49 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 51 H 0.06 1.59 5.88 -2.39 -0.01 1.58 16 52 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 53 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -64.50 390.48 3.87 -60.63 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.89 Total: 20.33 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 6.46 Total: 9.61 kcal Atomic # 7 Polarization: -89.30 SS G_CDS: -3.95 Total: -93.25 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -1.55 Total: -43.58 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -64.50 3.87 -60.63 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167004.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.836 kcal (2) G-P(sol) polarization free energy of solvation -64.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds