Wall clock time and date at job start Sat Apr 11 2020 06:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47253 * 2 1 4 4 H 1.09006 * 109.47009 * 54.99747 * 3 2 1 5 5 C 1.50703 * 109.47144 * 174.99901 * 3 2 1 6 6 H 1.08001 * 119.99704 * 120.00062 * 5 3 2 7 7 C 1.37872 * 119.99931 * 299.99930 * 5 3 2 8 8 N 1.31515 * 120.00470 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99884 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46904 * 89.99982 * 9 7 5 11 11 H 1.48505 * 109.47211 * 210.00154 * 9 7 5 12 12 H 1.48498 * 109.47237 * 330.00045 * 9 7 5 13 13 N 1.46902 * 109.47196 * 295.00139 * 3 2 1 14 14 C 1.48118 * 111.36252 * 295.11856 * 13 3 2 15 15 C 1.52579 * 112.16028 * 183.24427 * 14 13 3 16 16 O 1.44023 * 111.74362 * 49.48545 * 15 14 13 17 17 C 1.41214 * 110.56608 * 304.56071 * 16 15 14 18 18 H 1.08995 * 109.74031 * 306.00819 * 17 16 15 19 19 C 1.52164 * 118.62875 * 179.13810 * 17 16 15 20 20 N 1.48228 * 105.96262 * 214.97466 * 19 17 16 21 21 C 1.34777 * 125.80350 * 182.92856 * 20 19 17 22 22 O 1.21507 * 120.00068 * 179.69128 * 21 20 19 23 23 O 1.34644 * 119.99419 * 359.68454 * 21 20 19 24 24 C 1.45206 * 116.99182 * 180.02562 * 23 21 20 25 25 C 1.52997 * 109.47226 * 60.00595 * 24 23 21 26 26 C 1.52992 * 109.47178 * 300.00057 * 24 23 21 27 27 C 1.53006 * 109.46497 * 180.02562 * 24 23 21 28 28 C 1.48633 * 108.39772 * 2.66122 * 20 19 17 29 29 C 1.45558 * 110.99993 * 175.00053 * 13 3 2 30 30 H 1.09004 * 110.67245 * 65.23316 * 29 13 3 31 31 H 1.08998 * 109.47280 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47381 * 299.99856 * 1 2 3 33 33 H 1.09009 * 109.47250 * 60.00035 * 1 2 3 34 34 H 1.08999 * 109.47381 * 240.00144 * 2 1 3 35 35 H 1.09005 * 109.46770 * 119.99977 * 2 1 3 36 36 H 0.97000 * 120.00583 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.02742 * 62.39766 * 14 13 3 38 38 H 1.08998 * 108.55203 * 303.76657 * 14 13 3 39 39 H 1.08996 * 109.02110 * 288.90454 * 15 14 13 40 40 H 1.08999 * 109.02765 * 170.07119 * 15 14 13 41 41 H 1.09004 * 110.27078 * 95.78659 * 19 17 16 42 42 H 1.09004 * 110.03101 * 334.03069 * 19 17 16 43 43 H 1.09002 * 109.47153 * 299.99431 * 25 24 23 44 44 H 1.09001 * 109.46832 * 179.97438 * 25 24 23 45 45 H 1.09004 * 109.47261 * 59.99603 * 25 24 23 46 46 H 1.09001 * 109.47066 * 180.02562 * 26 24 23 47 47 H 1.08996 * 109.47747 * 300.00217 * 26 24 23 48 48 H 1.09002 * 109.47103 * 60.00629 * 26 24 23 49 49 H 1.08993 * 109.46955 * 300.00264 * 27 24 23 50 50 H 1.09000 * 109.47050 * 60.00093 * 27 24 23 51 51 H 1.09001 * 109.47002 * 179.97438 * 27 24 23 52 52 H 1.08998 * 110.61077 * 143.15741 * 28 20 19 53 53 H 1.09004 * 110.60901 * 266.14279 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0050 0.8799 1.3812 10 1 6.4428 2.1129 2.0837 11 1 6.4390 -0.3112 2.1546 12 1 6.6131 0.8393 0.0270 13 7 1.6514 2.0993 -1.2552 14 6 2.3140 1.4702 -2.4210 15 6 1.9852 2.1882 -3.7266 16 8 2.1799 3.6109 -3.6167 17 6 1.4285 4.1329 -2.5410 18 1 0.3831 3.8435 -2.6476 19 6 1.5156 5.6231 -2.2462 20 7 1.4222 5.7533 -0.7726 21 6 1.4016 6.9111 -0.0831 22 8 1.3165 6.8951 1.1289 23 8 1.4755 8.0856 -0.7373 24 6 1.4484 9.2924 0.0697 25 6 2.6335 9.2857 1.0372 26 6 0.1418 9.3456 0.8639 27 6 1.5407 10.5177 -0.8421 28 6 1.3486 4.3900 -0.1850 29 6 2.0174 3.5080 -1.2419 30 1 3.1009 3.6238 -1.2114 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8932 -0.5139 0.8900 36 1 3.8292 -0.0612 2.9499 37 1 1.9912 0.4317 -2.4956 38 1 3.3921 1.4964 -2.2629 39 1 0.9457 1.9909 -3.9884 40 1 2.6288 1.8014 -4.5167 41 1 0.6898 6.1513 -2.7230 42 1 2.4684 6.0184 -2.5984 43 1 2.5674 8.4128 1.6867 44 1 2.6134 10.1918 1.6427 45 1 3.5644 9.2477 0.4713 46 1 0.1213 10.2518 1.4694 47 1 -0.7025 9.3505 0.1746 48 1 0.0757 8.4728 1.5134 49 1 2.4713 10.4799 -1.4082 50 1 0.6962 10.5223 -1.5311 51 1 1.5200 11.4237 -0.2364 52 1 1.8990 4.3471 0.7548 53 1 0.3107 4.0915 -0.0371 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167017.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:13 Heat of formation + Delta-G solvation = -119.160251 kcal Electronic energy + Delta-G solvation = -32568.194015 eV Core-core repulsion = 28440.064580 eV Total energy + Delta-G solvation = -4128.129435 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.08230 -41.24026 -38.62066 -37.86365 -37.16408 -35.06580 -34.54749 -33.06089 -31.88052 -29.76674 -29.41768 -28.36408 -28.26603 -27.68711 -25.30735 -23.95877 -23.83779 -22.37704 -21.79281 -20.85332 -20.40319 -19.03357 -18.42097 -17.84760 -17.57004 -17.16926 -16.93754 -16.54436 -16.32931 -16.06214 -15.67012 -15.47778 -15.38067 -15.06620 -14.77711 -14.61101 -14.34376 -14.00451 -13.77472 -13.67562 -13.38719 -13.31508 -13.20261 -13.07371 -12.89383 -12.85355 -12.83493 -12.79152 -12.57636 -12.47539 -12.38906 -12.31674 -12.17338 -11.99784 -11.60272 -11.52140 -11.39987 -11.20567 -11.14830 -11.12552 -10.44901 -10.36432 -9.90866 -9.12789 -8.08335 -6.28298 0.89056 1.31716 1.35315 1.42112 1.68734 2.36120 2.40661 2.87118 3.12653 3.28413 3.48136 3.74678 3.78026 3.80903 3.95771 4.07416 4.12600 4.18623 4.32876 4.40938 4.46092 4.53330 4.56803 4.61961 4.65933 4.70741 4.71648 4.74950 4.76907 4.77230 4.84307 4.89214 4.89650 4.91395 4.99442 5.06435 5.14284 5.16172 5.25044 5.29237 5.35423 5.43089 5.44357 5.45565 5.61515 5.77724 5.97809 6.07552 6.11672 6.29802 6.31858 6.47500 6.89760 7.18748 7.42014 8.87989 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011230 B = 0.003735 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.648031 B = 7495.076202 C = 8517.139836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.105 4.105 3 C 0.218 3.782 4 H 0.010 0.990 5 C -0.550 4.550 6 H 0.047 0.953 7 C 0.028 3.972 8 N -0.906 5.906 9 Si 0.936 3.064 10 H -0.286 1.286 11 H -0.280 1.280 12 H -0.271 1.271 13 N -0.497 5.497 14 C 0.016 3.984 15 C 0.069 3.931 16 O -0.375 6.375 17 C 0.084 3.916 18 H 0.092 0.908 19 C 0.127 3.873 20 N -0.605 5.605 21 C 0.668 3.332 22 O -0.592 6.592 23 O -0.359 6.359 24 C 0.122 3.878 25 C -0.182 4.182 26 C -0.179 4.179 27 C -0.132 4.132 28 C 0.153 3.847 29 C 0.041 3.959 30 H 0.035 0.965 31 H 0.046 0.954 32 H 0.029 0.971 33 H 0.061 0.939 34 H 0.037 0.963 35 H 0.061 0.939 36 H 0.261 0.739 37 H 0.090 0.910 38 H 0.026 0.974 39 H 0.077 0.923 40 H 0.119 0.881 41 H 0.111 0.889 42 H 0.079 0.921 43 H 0.053 0.947 44 H 0.095 0.905 45 H 0.059 0.941 46 H 0.093 0.907 47 H 0.067 0.933 48 H 0.055 0.945 49 H 0.068 0.932 50 H 0.074 0.926 51 H 0.104 0.896 52 H 0.052 0.948 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.708 14.533 -11.122 19.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.144 4.144 3 C 0.111 3.889 4 H 0.027 0.973 5 C -0.589 4.589 6 H 0.065 0.935 7 C -0.173 4.173 8 N -0.545 5.545 9 Si 0.763 3.237 10 H -0.212 1.212 11 H -0.205 1.205 12 H -0.196 1.196 13 N -0.221 5.221 14 C -0.112 4.112 15 C -0.007 4.007 16 O -0.293 6.293 17 C 0.025 3.975 18 H 0.110 0.890 19 C 0.005 3.995 20 N -0.348 5.348 21 C 0.423 3.577 22 O -0.484 6.484 23 O -0.274 6.274 24 C 0.086 3.914 25 C -0.239 4.239 26 C -0.236 4.236 27 C -0.189 4.189 28 C 0.031 3.969 29 C -0.071 4.071 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.108 0.892 38 H 0.045 0.955 39 H 0.095 0.905 40 H 0.137 0.863 41 H 0.129 0.871 42 H 0.098 0.902 43 H 0.072 0.928 44 H 0.114 0.886 45 H 0.078 0.922 46 H 0.112 0.888 47 H 0.086 0.914 48 H 0.074 0.926 49 H 0.087 0.913 50 H 0.093 0.907 51 H 0.123 0.877 52 H 0.071 0.929 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.133 14.644 -10.716 19.497 hybrid contribution 2.232 -0.602 1.323 2.663 sum -4.901 14.042 -9.393 17.590 Atomic orbital electron populations 1.21582 0.96106 0.99937 1.00781 1.21427 0.94584 0.97753 1.00637 1.19122 0.91720 0.91922 0.86173 0.97252 1.21894 0.94137 1.37685 1.05223 0.93475 1.25486 1.01135 0.95016 0.95653 1.69975 1.36020 1.38800 1.09678 0.85894 0.82339 0.77342 0.78090 1.21240 1.20545 1.19558 1.63336 1.54709 0.99887 1.04200 1.22805 0.97687 0.99851 0.90831 1.22905 1.03082 0.78511 0.96175 1.87894 1.68923 1.22681 1.49843 1.22437 0.96319 0.93205 0.85568 0.88990 1.21546 1.04469 0.94765 0.78708 1.47598 1.75576 1.03304 1.08296 1.17512 0.76119 0.80845 0.83185 1.90909 1.56995 1.86970 1.13480 1.86324 1.86211 1.13421 1.41441 1.22500 0.96461 0.81015 0.91439 1.22495 0.97308 1.04161 0.99983 1.22469 0.95998 1.04157 1.01010 1.21869 1.03755 0.93668 0.99574 1.21563 1.01200 0.78101 0.95995 1.22737 0.97136 0.91075 0.96105 0.94730 0.93528 0.95131 0.91953 0.94450 0.92074 0.92944 0.89206 0.95518 0.90485 0.86324 0.87057 0.90235 0.92817 0.88620 0.92220 0.88776 0.91444 0.92593 0.91306 0.90718 0.87708 0.92922 0.89771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.72 9.80 71.98 0.71 -4.02 16 2 C -0.11 -4.73 5.14 30.59 0.16 -4.58 16 3 C 0.22 10.29 1.66 44.17 0.07 10.36 16 4 H 0.01 0.52 7.41 -2.38 -0.02 0.50 16 5 C -0.55 -29.04 7.09 25.60 0.18 -28.86 16 6 H 0.05 2.54 5.57 -2.91 -0.02 2.53 16 7 C 0.03 1.50 5.29 84.65 0.45 1.95 16 8 N -0.91 -51.21 11.29 21.45 0.24 -50.97 16 9 Si 0.94 43.94 29.54 68.60 2.03 45.96 16 10 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 13 N -0.50 -19.14 4.24 -845.48 -3.59 -22.73 16 14 C 0.02 0.56 4.94 85.93 0.42 0.98 16 15 C 0.07 1.80 6.84 71.84 0.49 2.29 16 16 O -0.38 -10.95 10.93 -148.13 -1.62 -12.57 16 17 C 0.08 2.43 3.02 31.26 0.09 2.53 16 18 H 0.09 2.44 8.06 -2.39 -0.02 2.42 16 19 C 0.13 3.37 6.86 85.77 0.59 3.96 16 20 N -0.60 -20.03 3.38 -943.61 -3.19 -23.22 16 21 C 0.67 22.98 7.94 129.79 1.03 24.01 16 22 O -0.59 -23.71 12.18 19.82 0.24 -23.47 16 23 O -0.36 -10.14 9.50 -55.53 -0.53 -10.67 16 24 C 0.12 2.72 1.13 -10.79 -0.01 2.71 16 25 C -0.18 -4.31 8.37 71.98 0.60 -3.71 16 26 C -0.18 -3.87 8.37 71.98 0.60 -3.27 16 27 C -0.13 -1.86 8.85 71.98 0.64 -1.22 16 28 C 0.15 5.78 5.86 85.98 0.50 6.28 16 29 C 0.04 1.52 1.81 46.13 0.08 1.60 16 30 H 0.03 1.55 6.99 -2.38 -0.02 1.53 16 31 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 2.12 7.75 -2.38 -0.02 2.10 16 34 H 0.04 1.60 6.37 -2.39 -0.02 1.59 16 35 H 0.06 3.18 5.95 -2.38 -0.01 3.16 16 36 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 37 H 0.09 2.96 6.47 -2.39 -0.02 2.95 16 38 H 0.03 1.08 6.04 -2.39 -0.01 1.06 16 39 H 0.08 1.69 8.13 -2.39 -0.02 1.67 16 40 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 42 H 0.08 2.10 8.14 -2.39 -0.02 2.09 16 43 H 0.05 1.69 5.88 -2.39 -0.01 1.67 16 44 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 46 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.06 1.62 5.88 -2.39 -0.01 1.60 16 49 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 50 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 51 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.05 2.37 8.07 -2.39 -0.02 2.35 16 53 H 0.08 3.05 8.14 -2.38 -0.02 3.03 16 Total: -1.00 -64.65 398.11 1.08 -63.57 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: 0.88 Total: 23.07 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 6.61 Total: 11.02 kcal Atomic # 7 Polarization: -90.38 SS G_CDS: -6.53 Total: -96.92 kcal Atomic # 8 Polarization: -44.80 SS G_CDS: -1.91 Total: -46.70 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -64.65 1.08 -63.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167017.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.595 kcal (2) G-P(sol) polarization free energy of solvation -64.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds