Wall clock time and date at job start Sat Apr 11 2020 06:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47342 * 2 1 4 4 H 1.09005 * 109.46965 * 299.73607 * 3 2 1 5 5 C 1.50694 * 109.47522 * 179.73589 * 3 2 1 6 6 H 1.08000 * 120.00645 * 245.27418 * 5 3 2 7 7 C 1.37880 * 119.99843 * 65.27741 * 5 3 2 8 8 N 1.31515 * 120.00140 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00029 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47208 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47057 * 120.00121 * 9 7 5 12 12 H 1.48501 * 109.47074 * 240.00052 * 9 7 5 13 13 N 1.46907 * 109.47448 * 59.73519 * 3 2 1 14 14 C 1.47882 * 111.00035 * 195.16972 * 13 3 2 15 15 C 1.52573 * 111.75382 * 182.64401 * 14 13 3 16 16 O 1.44027 * 111.74945 * 49.74864 * 15 14 13 17 17 C 1.41216 * 110.56091 * 304.55071 * 16 15 14 18 18 H 1.08995 * 109.74627 * 306.01216 * 17 16 15 19 19 C 1.52206 * 118.53769 * 178.86729 * 17 16 15 20 20 N 1.48222 * 105.94883 * 214.74758 * 19 17 16 21 21 C 1.34773 * 125.80054 * 183.08198 * 20 19 17 22 22 O 1.21514 * 120.00092 * 179.97438 * 21 20 19 23 23 O 1.34632 * 120.00312 * 359.97438 * 21 20 19 24 24 C 1.45191 * 117.00519 * 179.97438 * 23 21 20 25 25 C 1.53000 * 109.47022 * 60.00106 * 24 23 21 26 26 C 1.53001 * 109.47592 * 180.02562 * 24 23 21 27 27 C 1.53000 * 109.47531 * 300.00499 * 24 23 21 28 28 C 1.48642 * 108.39834 * 3.06393 * 20 19 17 29 29 C 1.45559 * 110.99698 * 75.13245 * 13 3 2 30 30 H 1.09000 * 110.66183 * 65.84037 * 29 13 3 31 31 H 1.09005 * 109.46836 * 174.99134 * 1 2 3 32 32 H 1.09004 * 109.47143 * 294.99101 * 1 2 3 33 33 H 1.08993 * 109.46794 * 54.99252 * 1 2 3 34 34 H 1.09000 * 109.47790 * 239.99809 * 2 1 3 35 35 H 1.09000 * 109.47006 * 119.99355 * 2 1 3 36 36 H 0.96993 * 120.00314 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.02113 * 303.22887 * 14 13 3 38 38 H 1.08995 * 109.02416 * 62.13633 * 14 13 3 39 39 H 1.09002 * 109.02080 * 170.33023 * 15 14 13 40 40 H 1.08993 * 109.02849 * 289.23543 * 15 14 13 41 41 H 1.09003 * 110.15009 * 333.86479 * 19 17 16 42 42 H 1.08990 * 110.15601 * 95.55074 * 19 17 16 43 43 H 1.09008 * 109.47370 * 59.99865 * 25 24 23 44 44 H 1.08993 * 109.47720 * 180.02562 * 25 24 23 45 45 H 1.09004 * 109.47299 * 300.00548 * 25 24 23 46 46 H 1.08994 * 109.46886 * 60.00195 * 26 24 23 47 47 H 1.08993 * 109.47216 * 180.02562 * 26 24 23 48 48 H 1.09001 * 109.46618 * 300.00435 * 26 24 23 49 49 H 1.08996 * 109.47469 * 59.99252 * 27 24 23 50 50 H 1.09003 * 109.47246 * 179.97438 * 27 24 23 51 51 H 1.09000 * 109.46599 * 299.99432 * 27 24 23 52 52 H 1.08999 * 110.60571 * 142.90100 * 28 20 19 53 53 H 1.08998 * 110.60664 * 265.72044 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6806 1.9549 -0.8924 5 6 3.5470 1.4425 0.0065 6 1 4.0834 1.8350 0.8578 7 6 4.2411 0.9415 -1.0743 8 7 3.5880 0.4640 -2.1112 9 14 6.1090 0.9422 -1.0666 10 1 6.5986 1.5307 0.2059 11 1 6.6051 -0.4520 -1.1909 12 1 6.6085 1.7490 -2.2089 13 7 1.5452 2.1369 1.1963 14 6 1.7024 3.6012 1.0620 15 6 1.2534 4.3359 2.3216 16 8 1.8426 3.7704 3.5079 17 6 1.5603 2.3893 3.5919 18 1 0.4847 2.2283 3.5207 19 6 2.1214 1.6026 4.7679 20 7 2.4406 0.2545 4.2409 21 6 2.9075 -0.7837 4.9623 22 8 3.1341 -1.8473 4.4200 23 8 3.1230 -0.6426 6.2837 24 6 3.6259 -1.8027 6.9973 25 6 4.9722 -2.2223 6.4039 26 6 3.8064 -1.4534 8.4759 27 6 2.6286 -2.9553 6.8642 28 6 2.1579 0.2422 2.7817 29 6 2.2742 1.7149 2.3833 30 1 3.3173 2.0259 2.3249 31 1 -0.3633 -1.0238 -0.0897 32 1 -0.3634 0.4342 0.9315 33 1 -0.3632 0.5895 -0.8417 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5137 0.8900 36 1 4.0762 0.1112 -2.8714 37 1 2.7510 3.8300 0.8719 38 1 1.1049 3.9469 0.2185 39 1 1.5449 5.3835 2.2448 40 1 0.1682 4.2743 2.4012 41 1 3.0250 2.0826 5.1438 42 1 1.3772 1.5306 5.5608 43 1 5.6829 -1.4012 6.4987 44 1 5.3497 -3.0935 6.9392 45 1 4.8433 -2.4713 5.3505 46 1 2.8471 -1.1548 8.8984 47 1 4.1844 -2.3242 9.0115 48 1 4.5168 -0.6321 8.5711 49 1 2.4995 -3.2044 5.8110 50 1 3.0064 -3.8264 7.3996 51 1 1.6694 -2.6564 7.2871 52 1 2.8983 -0.3577 2.2525 53 1 1.1529 -0.1330 2.5888 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167019.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:21 Heat of formation + Delta-G solvation = -112.160388 kcal Electronic energy + Delta-G solvation = -33013.264812 eV Core-core repulsion = 28885.438914 eV Total energy + Delta-G solvation = -4127.825898 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.11657 -41.27711 -38.53864 -37.91273 -37.11377 -35.01778 -34.55870 -33.21296 -31.86050 -29.70686 -29.51754 -28.35602 -28.26059 -27.69077 -25.34179 -24.14911 -23.51050 -22.37599 -21.64373 -21.14772 -20.47975 -19.23078 -18.29830 -17.71927 -17.61626 -17.09951 -16.86031 -16.55064 -16.30267 -16.00888 -15.70179 -15.45249 -15.34803 -15.21854 -14.83167 -14.52591 -14.28330 -14.07688 -13.78665 -13.61722 -13.33821 -13.30399 -13.25400 -13.06503 -12.95903 -12.87992 -12.84332 -12.69927 -12.58944 -12.44184 -12.39041 -12.28182 -12.16006 -11.91560 -11.58477 -11.43330 -11.38507 -11.31286 -11.12818 -11.09211 -10.49762 -10.32708 -9.86954 -9.13559 -8.12483 -6.29104 0.92735 1.28717 1.33803 1.41027 1.71695 2.34725 2.42185 2.89538 3.11852 3.29179 3.52342 3.76307 3.79717 3.81750 3.96582 4.08557 4.11292 4.21229 4.32087 4.43561 4.47940 4.52859 4.58148 4.62489 4.64488 4.68292 4.72838 4.77319 4.77839 4.79535 4.84900 4.88979 4.90222 4.93217 5.01243 5.03629 5.14869 5.15573 5.18998 5.30013 5.36549 5.42164 5.44773 5.47684 5.59787 5.76202 5.94960 6.07767 6.09581 6.23492 6.35986 6.47447 6.89608 7.21843 7.41383 8.87302 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010406 B = 0.004240 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.014941 B = 6602.490481 C = 7709.143640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.112 4.112 3 C 0.218 3.782 4 H 0.015 0.985 5 C -0.550 4.550 6 H 0.049 0.951 7 C 0.030 3.970 8 N -0.906 5.906 9 Si 0.933 3.067 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.277 1.277 13 N -0.498 5.498 14 C 0.017 3.983 15 C 0.071 3.929 16 O -0.376 6.376 17 C 0.080 3.920 18 H 0.092 0.908 19 C 0.126 3.874 20 N -0.608 5.608 21 C 0.667 3.333 22 O -0.592 6.592 23 O -0.361 6.361 24 C 0.122 3.878 25 C -0.182 4.182 26 C -0.132 4.132 27 C -0.179 4.179 28 C 0.156 3.844 29 C 0.045 3.955 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.061 0.939 33 H 0.037 0.963 34 H 0.047 0.953 35 H 0.045 0.955 36 H 0.261 0.739 37 H 0.022 0.978 38 H 0.088 0.912 39 H 0.120 0.880 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.110 0.890 43 H 0.058 0.942 44 H 0.095 0.905 45 H 0.053 0.947 46 H 0.074 0.926 47 H 0.104 0.896 48 H 0.067 0.933 49 H 0.055 0.945 50 H 0.093 0.907 51 H 0.066 0.934 52 H 0.059 0.941 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.142 1.319 18.981 19.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.151 4.151 3 C 0.111 3.889 4 H 0.033 0.967 5 C -0.589 4.589 6 H 0.067 0.933 7 C -0.171 4.171 8 N -0.545 5.545 9 Si 0.760 3.240 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.222 5.222 14 C -0.112 4.112 15 C -0.005 4.005 16 O -0.294 6.294 17 C 0.021 3.979 18 H 0.110 0.890 19 C 0.004 3.996 20 N -0.351 5.351 21 C 0.423 3.577 22 O -0.483 6.483 23 O -0.275 6.275 24 C 0.086 3.914 25 C -0.239 4.239 26 C -0.189 4.189 27 C -0.236 4.236 28 C 0.035 3.965 29 C -0.066 4.066 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.040 0.960 38 H 0.106 0.894 39 H 0.138 0.862 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.128 0.872 43 H 0.077 0.923 44 H 0.114 0.886 45 H 0.072 0.928 46 H 0.093 0.907 47 H 0.123 0.877 48 H 0.086 0.914 49 H 0.074 0.926 50 H 0.112 0.888 51 H 0.085 0.915 52 H 0.077 0.923 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.413 0.820 18.942 19.717 hybrid contribution 2.284 -0.238 -1.408 2.694 sum -3.129 0.582 17.534 17.820 Atomic orbital electron populations 1.21566 0.95817 0.99631 1.01213 1.21643 0.94888 0.98091 1.00470 1.19118 0.91083 0.91459 0.87284 0.96718 1.21952 0.93870 1.40710 1.02342 0.93327 1.25461 1.01182 0.95011 0.95414 1.70007 1.36207 1.41399 1.06887 0.85896 0.82711 0.77592 0.77786 1.20266 1.21053 1.20239 1.63390 1.51836 1.04060 1.02903 1.22754 1.00065 0.88744 0.99604 1.22878 0.98494 0.97495 0.81650 1.87896 1.77045 1.20745 1.43679 1.22506 0.99606 0.82507 0.93308 0.88996 1.21532 1.02128 0.80612 0.95364 1.47774 1.66961 1.11074 1.09306 1.17524 0.76677 0.82375 0.81172 1.90907 1.57971 1.26995 1.72433 1.86315 1.79070 1.43525 1.18600 1.22488 0.93548 0.82847 0.92538 1.22494 0.95986 1.02866 1.02596 1.21865 1.03702 1.03952 0.89335 1.22466 0.99178 0.98379 1.03567 1.21895 1.01255 0.96923 0.76424 1.22727 0.96671 0.94234 0.92994 0.94152 0.94017 0.91958 0.94361 0.93392 0.93690 0.92947 0.95994 0.89383 0.86186 0.90413 0.90379 0.87187 0.92286 0.88644 0.92797 0.90719 0.87724 0.91354 0.92570 0.88808 0.91453 0.92281 0.89605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.69 9.52 71.98 0.69 -4.00 16 2 C -0.11 -5.15 4.83 30.59 0.15 -5.00 16 3 C 0.22 10.26 1.63 44.17 0.07 10.33 16 4 H 0.01 0.79 8.00 -2.38 -0.02 0.77 16 5 C -0.55 -29.09 7.17 25.60 0.18 -28.91 16 6 H 0.05 2.65 5.60 -2.91 -0.02 2.64 16 7 C 0.03 1.65 5.32 84.66 0.45 2.10 16 8 N -0.91 -51.37 11.72 21.45 0.25 -51.12 16 9 Si 0.93 44.50 29.54 68.60 2.03 46.52 16 10 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 11 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 13 N -0.50 -19.09 4.06 -846.24 -3.44 -22.52 16 14 C 0.02 0.57 5.35 85.97 0.46 1.03 16 15 C 0.07 1.81 6.84 71.84 0.49 2.30 16 16 O -0.38 -10.95 10.93 -148.13 -1.62 -12.56 16 17 C 0.08 2.33 3.02 31.27 0.09 2.43 16 18 H 0.09 2.45 8.06 -2.39 -0.02 2.43 16 19 C 0.13 3.40 6.85 85.79 0.59 3.99 16 20 N -0.61 -20.44 3.38 -943.65 -3.19 -23.63 16 21 C 0.67 23.25 7.94 129.79 1.03 24.28 16 22 O -0.59 -23.88 12.18 19.80 0.24 -23.64 16 23 O -0.36 -10.34 9.50 -55.41 -0.53 -10.86 16 24 C 0.12 2.77 1.13 -10.79 -0.01 2.76 16 25 C -0.18 -4.39 8.37 71.98 0.60 -3.79 16 26 C -0.13 -1.90 8.85 71.98 0.64 -1.27 16 27 C -0.18 -3.92 8.37 71.98 0.60 -3.31 16 28 C 0.16 5.91 4.51 85.97 0.39 6.30 16 29 C 0.04 1.67 1.46 46.11 0.07 1.74 16 30 H 0.04 1.82 6.00 -2.39 -0.01 1.80 16 31 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.06 2.14 7.47 -2.38 -0.02 2.12 16 33 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.05 2.53 6.51 -2.39 -0.02 2.52 16 35 H 0.04 2.07 4.01 -2.39 -0.01 2.06 16 36 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 37 H 0.02 0.86 7.54 -2.39 -0.02 0.84 16 38 H 0.09 2.81 8.12 -2.39 -0.02 2.79 16 39 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.08 1.67 8.13 -2.39 -0.02 1.65 16 41 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.11 2.34 8.14 -2.39 -0.02 2.33 16 43 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 44 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.05 1.71 5.88 -2.38 -0.01 1.70 16 46 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.06 1.64 5.88 -2.39 -0.01 1.63 16 50 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 51 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 52 H 0.06 2.70 6.90 -2.39 -0.02 2.68 16 53 H 0.09 3.15 6.98 -2.39 -0.02 3.13 16 Total: -1.00 -64.84 394.89 1.12 -63.72 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 0.89 Total: 23.14 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 6.49 Total: 10.96 kcal Atomic # 7 Polarization: -90.90 SS G_CDS: -6.38 Total: -97.27 kcal Atomic # 8 Polarization: -45.17 SS G_CDS: -1.90 Total: -47.07 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -64.84 1.12 -63.72 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167019.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.443 kcal (2) G-P(sol) polarization free energy of solvation -64.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds