Wall clock time and date at job start Sat Apr 11 2020 06:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47025 * 2 1 4 4 H 1.08993 * 109.47063 * 56.26452 * 3 2 1 5 5 C 1.50696 * 109.47018 * 176.26533 * 3 2 1 6 6 H 1.08001 * 120.00293 * 121.91004 * 5 3 2 7 7 C 1.37875 * 120.00261 * 301.90632 * 5 3 2 8 8 N 1.31515 * 120.00323 * 180.02562 * 7 5 3 9 9 Si 1.86806 * 119.99692 * 0.02562 * 7 5 3 10 10 H 1.48495 * 109.47092 * 89.99750 * 9 7 5 11 11 H 1.48507 * 109.46733 * 209.99699 * 9 7 5 12 12 H 1.48496 * 109.46908 * 329.99403 * 9 7 5 13 13 N 1.46902 * 109.46578 * 296.26293 * 3 2 1 14 14 C 1.46853 * 110.99823 * 191.04933 * 13 3 2 15 15 C 1.53397 * 107.97858 * 183.38045 * 14 13 3 16 16 O 1.42609 * 108.22949 * 299.05513 * 15 14 13 17 17 C 1.42894 * 115.55606 * 60.49198 * 16 15 14 18 18 H 1.09005 * 111.96594 * 75.01094 * 17 16 15 19 19 C 1.55081 * 106.71237 * 198.16286 * 17 16 15 20 20 N 1.47105 * 107.10273 * 92.73331 * 19 17 16 21 21 C 1.34778 * 125.64703 * 180.17610 * 20 19 17 22 22 O 1.21511 * 119.99908 * 180.02562 * 21 20 19 23 23 O 1.34637 * 119.99919 * 0.02562 * 21 20 19 24 24 C 1.45197 * 117.00250 * 179.97438 * 23 21 20 25 25 C 1.53008 * 109.46650 * 59.99778 * 24 23 21 26 26 C 1.52999 * 109.47335 * 179.97438 * 24 23 21 27 27 C 1.52998 * 109.47019 * 300.00649 * 24 23 21 28 28 C 1.47694 * 108.70896 * 0.43909 * 20 19 17 29 29 C 1.45024 * 111.00321 * 317.50022 * 13 3 2 30 30 H 1.09006 * 109.68953 * 61.42356 * 29 13 3 31 31 H 1.08993 * 109.47551 * 295.03155 * 1 2 3 32 32 H 1.08999 * 109.47305 * 55.04100 * 1 2 3 33 33 H 1.09009 * 109.46994 * 175.03301 * 1 2 3 34 34 H 1.08997 * 109.47385 * 239.99174 * 2 1 3 35 35 H 1.09006 * 109.46823 * 119.99550 * 2 1 3 36 36 H 0.97000 * 120.00066 * 180.02562 * 8 7 5 37 37 H 1.09008 * 109.75920 * 63.75842 * 14 13 3 38 38 H 1.08995 * 109.80141 * 303.03009 * 14 13 3 39 39 H 1.09003 * 109.71163 * 179.37580 * 15 14 13 40 40 H 1.08998 * 109.74872 * 58.76212 * 15 14 13 41 41 H 1.09010 * 109.91044 * 333.36685 * 19 17 16 42 42 H 1.08999 * 110.07071 * 212.18780 * 19 17 16 43 43 H 1.09001 * 109.46889 * 60.00679 * 25 24 23 44 44 H 1.09004 * 109.46901 * 179.97438 * 25 24 23 45 45 H 1.08994 * 109.47301 * 300.00063 * 25 24 23 46 46 H 1.08993 * 109.46914 * 60.00181 * 26 24 23 47 47 H 1.09003 * 109.46816 * 179.97438 * 26 24 23 48 48 H 1.08997 * 109.46851 * 299.99805 * 26 24 23 49 49 H 1.08994 * 109.47744 * 59.99439 * 27 24 23 50 50 H 1.09003 * 109.47084 * 180.02562 * 27 24 23 51 51 H 1.09002 * 109.46926 * 299.99522 * 27 24 23 52 52 H 1.08997 * 110.45824 * 141.91800 * 28 20 19 53 53 H 1.09001 * 110.45809 * 264.47963 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6230 1.9752 0.8546 5 6 3.5441 1.4435 0.0925 6 1 4.1322 1.9209 -0.6773 7 6 4.1695 0.8350 1.1600 8 7 5.4822 0.8364 1.2411 9 14 3.1524 0.0088 2.4913 10 1 2.9280 -1.4143 2.1312 11 1 3.8766 0.0837 3.7856 12 1 1.8441 0.7003 2.6154 13 7 1.6253 2.1083 -1.2421 14 6 2.3089 3.3983 -1.4012 15 6 1.7648 4.0693 -2.6687 16 8 2.0534 3.2237 -3.7802 17 6 1.4762 1.9176 -3.7274 18 1 0.4075 1.9352 -3.9413 19 6 2.2622 1.0415 -4.7372 20 7 3.3463 0.3863 -3.9892 21 6 4.2596 -0.4582 -4.5080 22 8 5.1140 -0.9432 -3.7929 23 8 4.2253 -0.7645 -5.8187 24 6 5.2402 -1.6801 -6.3085 25 6 5.1210 -3.0154 -5.5709 26 6 5.0413 -1.9070 -7.8084 27 6 6.6272 -1.0834 -6.0618 28 6 3.2644 0.8021 -2.5744 29 6 1.7995 1.2323 -2.3846 30 1 1.1768 0.3455 -2.2657 31 1 -0.3634 0.4348 0.9311 32 1 -0.3634 0.5888 -0.8422 33 1 -0.3633 -1.0239 -0.0890 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 5.9222 0.4080 1.9919 37 1 3.3822 3.2367 -1.5015 38 1 2.1109 4.0303 -0.5355 39 1 2.2466 5.0371 -2.8082 40 1 0.6869 4.2048 -2.5800 41 1 2.6807 1.6680 -5.5251 42 1 1.6037 0.2894 -5.1716 43 1 4.1328 -3.4405 -5.7466 44 1 5.8825 -3.7030 -5.9389 45 1 5.2624 -2.8541 -4.5023 46 1 5.1259 -0.9560 -8.3340 47 1 5.8035 -2.5941 -8.1761 48 1 4.0531 -2.3324 -7.9836 49 1 6.7687 -0.9221 -4.9932 50 1 7.3891 -1.7706 -6.4299 51 1 6.7122 -0.1322 -6.5872 52 1 3.5049 -0.0335 -1.9172 53 1 3.9331 1.6417 -2.3848 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167021.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:25 Heat of formation + Delta-G solvation = -110.878210 kcal Electronic energy + Delta-G solvation = -33460.679304 eV Core-core repulsion = 29332.909005 eV Total energy + Delta-G solvation = -4127.770299 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.21326 -41.33039 -38.44011 -38.07393 -36.93311 -35.00717 -34.50498 -33.66150 -31.94391 -29.67908 -29.46224 -28.40200 -28.28318 -28.00688 -25.08600 -24.76938 -23.49644 -22.64200 -21.92711 -20.54778 -20.06377 -19.37818 -18.57643 -17.85411 -17.70431 -17.55177 -17.10287 -16.57048 -16.26110 -16.08908 -15.55278 -15.49060 -15.42451 -15.12996 -14.71614 -14.59120 -14.50484 -14.04964 -13.76777 -13.65322 -13.56261 -13.40665 -13.32877 -13.11696 -12.91131 -12.89985 -12.87039 -12.74482 -12.60051 -12.49147 -12.45895 -12.35272 -12.21858 -11.88370 -11.62770 -11.41414 -11.36486 -11.22205 -11.11962 -11.07859 -10.68869 -10.42635 -9.81771 -9.04433 -8.29120 -6.33204 1.03220 1.27512 1.32079 1.41996 1.73414 2.29126 2.66648 2.88192 3.06073 3.09147 3.54409 3.74068 3.77943 3.78143 3.86307 3.93601 4.17236 4.22655 4.30328 4.39667 4.43718 4.46649 4.47552 4.54681 4.57883 4.58341 4.66953 4.71565 4.73314 4.76712 4.80694 4.85874 4.87558 4.89242 5.00690 5.04455 5.07365 5.14478 5.15619 5.20482 5.26145 5.26651 5.34926 5.44260 5.44910 5.48996 5.57945 6.08791 6.26975 6.31766 6.39574 6.43945 6.75330 7.26237 7.33432 8.86025 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011327 B = 0.004536 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.348931 B = 6171.889194 C = 7399.580806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.135 4.135 3 C 0.186 3.814 4 H 0.044 0.956 5 C -0.537 4.537 6 H 0.051 0.949 7 C 0.017 3.983 8 N -0.946 5.946 9 Si 0.944 3.056 10 H -0.278 1.278 11 H -0.307 1.307 12 H -0.236 1.236 13 N -0.499 5.499 14 C 0.022 3.978 15 C 0.075 3.925 16 O -0.398 6.398 17 C 0.095 3.905 18 H 0.137 0.863 19 C 0.109 3.891 20 N -0.607 5.607 21 C 0.658 3.342 22 O -0.601 6.601 23 O -0.359 6.359 24 C 0.122 3.878 25 C -0.179 4.179 26 C -0.129 4.129 27 C -0.181 4.181 28 C 0.130 3.870 29 C 0.056 3.944 30 H 0.111 0.889 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.032 0.968 36 H 0.261 0.739 37 H 0.019 0.981 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.111 0.889 43 H 0.067 0.933 44 H 0.094 0.906 45 H 0.047 0.953 46 H 0.071 0.929 47 H 0.104 0.896 48 H 0.075 0.925 49 H 0.046 0.954 50 H 0.095 0.905 51 H 0.062 0.938 52 H 0.051 0.949 53 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.215 -1.502 -17.072 20.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.172 4.172 3 C 0.078 3.922 4 H 0.061 0.939 5 C -0.576 4.576 6 H 0.069 0.931 7 C -0.181 4.181 8 N -0.586 5.586 9 Si 0.772 3.228 10 H -0.205 1.205 11 H -0.236 1.236 12 H -0.160 1.160 13 N -0.221 5.221 14 C -0.106 4.106 15 C -0.002 4.002 16 O -0.317 6.317 17 C 0.037 3.963 18 H 0.154 0.846 19 C -0.013 4.013 20 N -0.349 5.349 21 C 0.413 3.587 22 O -0.492 6.492 23 O -0.273 6.273 24 C 0.086 3.914 25 C -0.237 4.237 26 C -0.186 4.186 27 C -0.239 4.239 28 C 0.007 3.993 29 C -0.055 4.055 30 H 0.129 0.871 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.070 0.930 37 H 0.038 0.962 38 H 0.103 0.897 39 H 0.128 0.872 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.129 0.871 43 H 0.086 0.914 44 H 0.113 0.887 45 H 0.066 0.934 46 H 0.090 0.910 47 H 0.123 0.877 48 H 0.094 0.906 49 H 0.065 0.935 50 H 0.114 0.886 51 H 0.081 0.919 52 H 0.070 0.930 53 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -11.116 -1.610 -16.985 20.363 hybrid contribution 1.839 -0.793 1.751 2.661 sum -9.277 -2.403 -15.234 17.997 Atomic orbital electron populations 1.21725 0.93381 1.01648 1.02757 1.22087 0.97504 0.97667 0.99966 1.19647 0.91652 0.91514 0.89379 0.93855 1.22076 0.92558 1.35193 1.07779 0.93070 1.25787 0.95390 0.96654 1.00292 1.70081 1.10298 1.46112 1.32150 0.85944 0.79889 0.79281 0.77656 1.20511 1.23575 1.15983 1.61616 1.55693 1.03412 1.01358 1.22745 0.96517 0.91409 0.99941 1.22790 1.01288 0.92905 0.83195 1.87747 1.75300 1.24532 1.44116 1.23477 0.98592 0.82113 0.92080 0.84602 1.22515 0.88496 0.95877 0.94419 1.47489 1.30586 1.45649 1.11169 1.17736 0.80650 0.78839 0.81451 1.90940 1.39129 1.57286 1.61842 1.86293 1.55591 1.63089 1.22341 1.22479 0.85503 0.87234 0.96215 1.22468 1.03522 0.96284 1.01394 1.21850 1.04412 1.03695 0.88604 1.22478 0.96612 1.02103 1.02663 1.22756 0.99937 0.98453 0.78115 1.22683 0.92749 0.97815 0.92225 0.87086 0.93082 0.90304 0.92397 0.92792 0.95034 0.93024 0.96227 0.89677 0.87215 0.90007 0.89754 0.87073 0.91369 0.88750 0.93351 0.91039 0.87739 0.90604 0.93517 0.88620 0.91934 0.93024 0.94255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.10 9.47 71.98 0.68 -3.42 16 2 C -0.13 -5.33 4.24 30.59 0.13 -5.20 16 3 C 0.19 7.97 1.60 44.17 0.07 8.04 16 4 H 0.04 1.92 7.33 -2.39 -0.02 1.90 16 5 C -0.54 -29.06 6.33 25.60 0.16 -28.90 16 6 H 0.05 3.12 4.31 -2.91 -0.01 3.11 16 7 C 0.02 0.97 5.45 84.65 0.46 1.43 16 8 N -0.95 -60.62 13.96 21.45 0.30 -60.32 16 9 Si 0.94 45.37 24.33 68.60 1.67 47.04 16 10 H -0.28 -13.17 6.84 99.48 0.68 -12.49 16 11 H -0.31 -15.05 7.11 99.48 0.71 -14.34 16 12 H -0.24 -10.16 6.54 99.48 0.65 -9.51 16 13 N -0.50 -17.72 4.12 -850.12 -3.50 -21.22 16 14 C 0.02 0.78 4.97 86.45 0.43 1.21 16 15 C 0.07 1.95 7.05 72.12 0.51 2.46 16 16 O -0.40 -11.53 10.02 -148.98 -1.49 -13.03 16 17 C 0.10 2.46 4.11 31.71 0.13 2.59 16 18 H 0.14 2.44 8.14 -2.38 -0.02 2.42 16 19 C 0.11 2.88 6.56 86.98 0.57 3.45 16 20 N -0.61 -22.57 3.34 -941.76 -3.14 -25.71 16 21 C 0.66 26.16 7.93 129.79 1.03 27.19 16 22 O -0.60 -28.84 12.16 19.81 0.24 -28.60 16 23 O -0.36 -11.36 9.49 -55.46 -0.53 -11.89 16 24 C 0.12 3.15 1.13 -10.79 -0.01 3.14 16 25 C -0.18 -4.69 8.37 71.98 0.60 -4.09 16 26 C -0.13 -2.07 8.85 71.98 0.64 -1.43 16 27 C -0.18 -5.00 8.37 71.98 0.60 -4.40 16 28 C 0.13 5.60 4.24 86.44 0.37 5.97 16 29 C 0.06 1.87 1.92 45.96 0.09 1.96 16 30 H 0.11 3.46 5.36 -2.38 -0.01 3.45 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 2.09 6.81 -2.39 -0.02 2.07 16 33 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.05 2.21 4.90 -2.39 -0.01 2.20 16 35 H 0.03 1.37 2.96 -2.38 -0.01 1.37 16 36 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 37 H 0.02 0.87 4.94 -2.38 -0.01 0.86 16 38 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 39 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.08 2.19 8.00 -2.38 -0.02 2.17 16 42 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.09 1.89 8.14 -2.38 -0.02 1.88 16 45 H 0.05 1.70 5.88 -2.39 -0.01 1.69 16 46 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.05 1.72 5.88 -2.39 -0.01 1.71 16 50 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 51 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 52 H 0.05 2.68 6.07 -2.39 -0.01 2.66 16 53 H 0.04 2.01 5.10 -2.39 -0.01 2.00 16 Total: -1.00 -75.58 378.32 0.84 -74.74 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: 0.83 Total: 29.01 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 6.46 Total: 9.99 kcal Atomic # 7 Polarization: -100.91 SS G_CDS: -6.34 Total: -107.26 kcal Atomic # 8 Polarization: -51.74 SS G_CDS: -1.78 Total: -53.52 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.67 Total: 47.04 kcal Total: -75.58 0.84 -74.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167021.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.142 kcal (2) G-P(sol) polarization free energy of solvation -75.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds