Wall clock time and date at job start Sat Apr 11 2020 06:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47064 * 2 1 4 4 H 1.08998 * 109.47035 * 302.76606 * 3 2 1 5 5 C 1.50694 * 109.47288 * 182.76433 * 3 2 1 6 6 H 1.08002 * 120.00099 * 240.00196 * 5 3 2 7 7 C 1.37877 * 119.99903 * 59.99899 * 5 3 2 8 8 N 1.31519 * 120.00076 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 120.00024 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47074 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46923 * 120.00124 * 9 7 5 12 12 H 1.48503 * 109.46930 * 239.99888 * 9 7 5 13 13 N 1.46898 * 109.47346 * 62.76286 * 3 2 1 14 14 C 1.48507 * 110.99838 * 60.92833 * 13 3 2 15 15 C 1.54268 * 104.74832 * 159.32283 * 14 13 3 16 16 H 1.08999 * 112.65829 * 212.98229 * 15 14 13 17 17 C 1.54391 * 108.77458 * 86.62139 * 15 14 13 18 18 O 1.44380 * 104.91800 * 272.87955 * 17 15 14 19 19 C 1.44390 * 105.25562 * 319.23601 * 18 17 15 20 20 C 1.54391 * 104.91812 * 40.75359 * 19 18 17 21 21 C 1.53006 * 113.20055 * 213.19449 * 20 19 18 22 22 O 1.42899 * 109.46983 * 297.60750 * 21 20 19 23 23 C 1.42900 * 113.99918 * 180.02562 * 22 21 20 24 24 C 1.50691 * 109.47395 * 180.02562 * 23 22 21 25 25 O 1.21280 * 120.00298 * 359.97438 * 24 23 22 26 26 N 1.34783 * 120.00239 * 180.02562 * 24 23 22 27 27 C 1.46499 * 119.99961 * 179.97438 * 26 24 23 28 28 C 1.46507 * 119.99591 * 359.97438 * 26 24 23 29 29 C 1.48501 * 111.00176 * 176.32247 * 13 3 2 30 30 H 1.08998 * 109.46911 * 174.61763 * 1 2 3 31 31 H 1.09001 * 109.47318 * 294.61404 * 1 2 3 32 32 H 1.08997 * 109.47040 * 54.61666 * 1 2 3 33 33 H 1.08997 * 109.47018 * 240.00016 * 2 1 3 34 34 H 1.09003 * 109.46970 * 119.99631 * 2 1 3 35 35 H 0.97003 * 120.00103 * 180.02562 * 8 7 5 36 36 H 1.09005 * 110.38200 * 40.50625 * 14 13 3 37 37 H 1.09003 * 110.38464 * 278.14214 * 14 13 3 38 38 H 1.08999 * 110.35027 * 31.73920 * 17 15 14 39 39 H 1.09004 * 110.35145 * 154.01491 * 17 15 14 40 40 H 1.08999 * 110.35135 * 281.89238 * 19 18 17 41 41 H 1.09002 * 110.43776 * 159.66446 * 19 18 17 42 42 H 1.08998 * 109.46658 * 57.60958 * 21 20 19 43 43 H 1.08996 * 109.46727 * 177.60790 * 21 20 19 44 44 H 1.09005 * 109.47182 * 300.00360 * 23 22 21 45 45 H 1.09004 * 109.47088 * 59.99342 * 23 22 21 46 46 H 1.09003 * 109.46696 * 90.00016 * 27 26 24 47 47 H 1.09002 * 109.46553 * 209.99547 * 27 26 24 48 48 H 1.08993 * 109.47519 * 329.99479 * 27 26 24 49 49 H 1.08993 * 109.46984 * 0.02562 * 28 26 24 50 50 H 1.08994 * 109.46536 * 120.00446 * 28 26 24 51 51 H 1.08998 * 109.46576 * 240.00269 * 28 26 24 52 52 H 1.09000 * 110.38980 * 319.48514 * 29 13 3 53 53 H 1.09002 * 110.38285 * 81.74559 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6368 1.9704 -0.8641 5 6 3.5454 1.4431 -0.0685 6 1 4.1219 1.8979 0.7235 7 6 4.1868 0.8630 -1.1423 8 7 3.4849 0.3096 -2.1071 9 14 6.0530 0.8631 -1.2270 10 1 6.6029 1.5439 -0.0272 11 1 6.5465 -0.5367 -1.2722 12 1 6.4930 1.5829 -2.4491 13 7 1.6056 2.1155 1.2314 14 6 2.1555 1.4356 2.4318 15 6 2.0859 2.4960 3.5501 16 1 2.9025 2.4051 4.2663 17 6 0.6904 2.4339 4.2076 18 8 -0.1374 3.3032 3.4053 19 6 0.6908 4.4477 3.1070 20 6 2.0863 3.8604 2.8046 21 6 3.2327 4.7750 3.2411 22 8 3.1649 6.0035 2.5143 23 6 4.1970 6.9339 2.8480 24 6 4.0289 8.1863 2.0271 25 8 3.1155 8.2736 1.2340 26 7 4.8942 9.2093 2.1735 27 6 4.7311 10.4267 1.3750 28 6 5.9979 9.1037 3.1312 29 6 2.1566 3.4924 1.3081 30 1 -0.3633 -1.0231 -0.0964 31 1 -0.3634 0.4280 0.9343 32 1 -0.3633 0.5951 -0.8378 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.9362 -0.0988 -2.8624 36 1 3.1886 1.1346 2.2577 37 1 1.5455 0.5702 2.6907 38 1 0.3049 1.4147 4.1832 39 1 0.7385 2.7974 5.2341 40 1 0.7388 5.1154 3.9672 41 1 0.3064 4.9792 2.2364 42 1 3.1483 4.9791 4.3085 43 1 4.1852 4.2853 3.0389 44 1 4.1332 7.1828 3.9073 45 1 5.1694 6.4887 2.6374 46 1 4.0927 11.1294 1.9105 47 1 5.7067 10.8811 1.2021 48 1 4.2728 10.1753 0.4187 49 1 5.9570 8.1340 3.6272 50 1 6.9469 9.2021 2.6041 51 1 5.9111 9.8963 3.8743 52 1 3.1899 3.5078 0.9615 53 1 1.5486 4.1780 0.7179 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255167741.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:38 Heat of formation + Delta-G solvation = -100.903928 kcal Electronic energy + Delta-G solvation = -32064.431403 eV Core-core repulsion = 27937.093622 eV Total energy + Delta-G solvation = -4127.337781 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.38102 -39.95511 -37.45027 -36.62238 -35.71879 -33.73408 -31.82677 -30.83856 -30.18841 -29.47828 -27.63355 -26.55890 -25.71146 -25.34302 -24.82202 -23.87801 -22.07072 -20.73907 -19.76676 -19.27375 -18.56782 -17.47008 -16.79060 -16.63432 -16.54241 -15.93512 -15.49146 -15.43598 -15.05867 -14.95984 -14.62425 -14.17323 -13.88558 -13.57603 -13.16519 -13.10255 -13.01827 -12.90737 -12.82384 -12.62644 -12.42015 -12.36533 -12.27852 -12.05027 -11.56902 -11.27574 -11.06415 -10.93691 -10.88948 -10.67440 -10.60840 -10.52843 -10.35116 -10.11370 -9.88610 -9.84587 -9.71617 -9.59575 -9.37781 -9.25673 -9.00872 -8.94378 -8.33222 -7.10088 -5.96106 -4.08967 2.43077 2.49571 3.24855 3.33443 3.34301 3.62875 4.30432 4.39428 4.41218 4.62759 4.77500 4.84561 4.92611 4.93621 4.98258 5.01786 5.13290 5.23350 5.26312 5.28145 5.29311 5.30230 5.44347 5.52132 5.54330 5.55667 5.85849 5.95667 6.02681 6.08958 6.09764 6.26166 6.32513 6.42453 6.54034 6.60011 6.69712 6.77234 6.79745 6.88858 6.92144 7.11789 7.14723 7.25565 7.28456 7.35691 7.64995 7.78108 7.98532 8.03743 8.19334 8.29110 8.47813 9.01564 9.57244 11.03127 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009335 B = 0.003862 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2998.697331 B = 7248.167491 C = 9215.003587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 C 0.203 3.797 4 H 0.040 0.960 5 C -0.540 4.540 6 H 0.057 0.943 7 C 0.069 3.931 8 N -0.883 5.883 9 Si 0.885 3.115 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.497 5.497 14 C 0.047 3.953 15 C -0.121 4.121 16 H 0.086 0.914 17 C 0.061 3.939 18 O -0.358 6.358 19 C 0.074 3.926 20 C -0.094 4.094 21 C 0.086 3.914 22 O -0.354 6.354 23 C 0.046 3.954 24 C 0.513 3.487 25 O -0.508 6.508 26 N -0.627 5.627 27 C 0.087 3.913 28 C 0.075 3.925 29 C 0.060 3.940 30 H 0.023 0.977 31 H 0.048 0.952 32 H 0.040 0.960 33 H 0.090 0.910 34 H 0.030 0.970 35 H 0.260 0.740 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.093 0.907 42 H 0.049 0.951 43 H 0.057 0.943 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.054 0.946 47 H 0.069 0.931 48 H 0.078 0.922 49 H 0.078 0.922 50 H 0.064 0.936 51 H 0.063 0.937 52 H 0.060 0.940 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.578 13.990 15.017 21.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.147 4.147 3 C 0.096 3.904 4 H 0.057 0.943 5 C -0.579 4.579 6 H 0.075 0.925 7 C -0.133 4.133 8 N -0.521 5.521 9 Si 0.713 3.287 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.221 5.221 14 C -0.082 4.082 15 C -0.140 4.140 16 H 0.104 0.896 17 C -0.016 4.016 18 O -0.276 6.276 19 C -0.003 4.003 20 C -0.095 4.095 21 C 0.009 3.991 22 O -0.272 6.272 23 C -0.034 4.034 24 C 0.300 3.700 25 O -0.381 6.381 26 N -0.365 5.365 27 C -0.055 4.055 28 C -0.068 4.068 29 C -0.069 4.069 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.108 0.892 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.111 0.889 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.094 0.906 45 H 0.097 0.903 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.097 0.903 49 H 0.097 0.903 50 H 0.083 0.917 51 H 0.082 0.918 52 H 0.078 0.922 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.106 13.913 14.149 20.085 hybrid contribution 2.754 0.003 0.174 2.760 sum 5.860 13.915 14.323 20.812 Atomic orbital electron populations 1.21701 0.98724 0.98206 1.00838 1.21555 0.92286 0.99015 1.01813 1.19397 0.92635 0.91136 0.87260 0.94257 1.21722 0.92743 1.37265 1.06220 0.92472 1.24900 0.97705 0.95134 0.95602 1.69891 1.34756 1.37706 1.09777 0.86666 0.86550 0.77626 0.77871 1.20108 1.21041 1.21049 1.65769 1.52534 1.00818 1.02940 1.22955 0.99782 0.95278 0.90140 1.23318 0.97772 0.94948 0.97995 0.89600 1.23297 0.89702 0.95656 0.92939 1.89141 1.35730 1.31566 1.71178 1.23218 0.88841 0.88383 0.99886 1.22627 0.94392 0.93517 0.98946 1.22421 0.98430 0.83984 0.94216 1.88061 1.48863 1.25932 1.64299 1.22180 0.93341 0.89699 0.98212 1.20374 0.81986 0.84102 0.83571 1.90760 1.31160 1.80656 1.35539 1.47687 1.29773 1.16870 1.42137 1.21612 1.01791 0.85592 0.96531 1.21875 0.89417 1.03039 0.92508 1.22875 1.00276 0.92434 0.91271 0.95769 0.93339 0.94131 0.89155 0.95123 0.92985 0.92482 0.91367 0.89224 0.93727 0.93702 0.88869 0.93279 0.92483 0.90586 0.90289 0.92723 0.91192 0.90294 0.90343 0.91708 0.91802 0.92203 0.91255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.71 37.16 0.36 -2.57 16 2 C -0.11 -2.60 5.05 -26.73 -0.14 -2.74 16 3 C 0.20 5.07 1.92 -68.87 -0.13 4.94 16 4 H 0.04 1.12 8.14 -51.93 -0.42 0.70 16 5 C -0.54 -14.29 6.51 -34.44 -0.22 -14.52 16 6 H 0.06 1.50 5.67 -52.49 -0.30 1.21 16 7 C 0.07 1.88 5.30 -17.82 -0.09 1.78 16 8 N -0.88 -24.98 11.30 55.43 0.63 -24.36 16 9 Si 0.88 21.00 29.54 -169.99 -5.02 15.98 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 N -0.50 -10.74 4.73 -223.65 -1.06 -11.80 16 14 C 0.05 0.89 4.59 -2.27 -0.01 0.88 16 15 C -0.12 -1.85 3.85 -87.91 -0.34 -2.19 16 16 H 0.09 1.11 7.96 -51.93 -0.41 0.69 16 17 C 0.06 0.89 7.05 37.89 0.27 1.16 16 18 O -0.36 -6.30 11.50 -35.23 -0.41 -6.70 16 19 C 0.07 1.19 6.49 37.89 0.25 1.44 16 20 C -0.09 -1.52 0.86 -151.80 -0.13 -1.65 16 21 C 0.09 1.18 5.00 37.16 0.19 1.36 16 22 O -0.35 -5.40 9.50 -55.14 -0.52 -5.92 16 23 C 0.05 0.51 4.73 36.00 0.17 0.68 16 24 C 0.51 6.80 7.75 -10.99 -0.09 6.72 16 25 O -0.51 -9.23 16.08 -14.35 -0.23 -9.46 16 26 N -0.63 -5.97 3.27 -189.52 -0.62 -6.59 16 27 C 0.09 0.72 10.48 59.85 0.63 1.34 16 28 C 0.07 0.39 10.60 59.85 0.63 1.03 16 29 C 0.06 1.23 5.06 -2.27 -0.01 1.22 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 1.01 7.85 -51.93 -0.41 0.60 16 32 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 2.42 6.00 -51.93 -0.31 2.11 16 34 H 0.03 0.71 6.81 -51.93 -0.35 0.36 16 35 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.06 1.19 6.16 -51.93 -0.32 0.87 16 37 H 0.07 1.27 6.95 -51.93 -0.36 0.91 16 38 H 0.09 1.27 7.50 -51.93 -0.39 0.88 16 39 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.04 0.64 8.01 -51.93 -0.42 0.23 16 41 H 0.09 1.63 7.51 -51.93 -0.39 1.24 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.08 0.61 7.79 -51.93 -0.40 0.20 16 45 H 0.08 0.74 7.79 -51.93 -0.40 0.34 16 46 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 48 H 0.08 0.81 7.42 -51.93 -0.39 0.42 16 49 H 0.08 0.33 5.76 -51.93 -0.30 0.03 16 50 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 51 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 52 H 0.06 1.36 5.80 -51.93 -0.30 1.06 16 53 H 0.07 1.51 7.51 -51.93 -0.39 1.12 16 LS Contribution 404.34 15.07 6.09 6.09 Total: -1.00 -33.25 404.34 -9.01 -42.27 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -9.20 Total: 1.62 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 1.33 Total: -1.12 kcal Atomic # 7 Polarization: -41.69 SS G_CDS: -1.05 Total: -42.75 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -1.16 Total: -22.09 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.25 -9.01 -42.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167741.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.635 kcal (2) G-P(sol) polarization free energy of solvation -33.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds