Wall clock time and date at job start Sat Apr 11 2020 06:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47064 * 2 1 4 4 H 1.08998 * 109.47035 * 302.76606 * 3 2 1 5 5 C 1.50694 * 109.47288 * 182.76433 * 3 2 1 6 6 H 1.08002 * 120.00099 * 240.00196 * 5 3 2 7 7 C 1.37877 * 119.99903 * 59.99899 * 5 3 2 8 8 N 1.31519 * 120.00076 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 120.00024 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47074 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46923 * 120.00124 * 9 7 5 12 12 H 1.48503 * 109.46930 * 239.99888 * 9 7 5 13 13 N 1.46898 * 109.47346 * 62.76286 * 3 2 1 14 14 C 1.48507 * 110.99838 * 60.92833 * 13 3 2 15 15 C 1.54268 * 104.74832 * 159.32283 * 14 13 3 16 16 H 1.08999 * 112.65829 * 212.98229 * 15 14 13 17 17 C 1.54391 * 108.77458 * 86.62139 * 15 14 13 18 18 O 1.44380 * 104.91800 * 272.87955 * 17 15 14 19 19 C 1.44390 * 105.25562 * 319.23601 * 18 17 15 20 20 C 1.54391 * 104.91812 * 40.75359 * 19 18 17 21 21 C 1.53006 * 113.20055 * 213.19449 * 20 19 18 22 22 O 1.42899 * 109.46983 * 297.60750 * 21 20 19 23 23 C 1.42900 * 113.99918 * 180.02562 * 22 21 20 24 24 C 1.50691 * 109.47395 * 180.02562 * 23 22 21 25 25 O 1.21280 * 120.00298 * 359.97438 * 24 23 22 26 26 N 1.34783 * 120.00239 * 180.02562 * 24 23 22 27 27 C 1.46499 * 119.99961 * 179.97438 * 26 24 23 28 28 C 1.46507 * 119.99591 * 359.97438 * 26 24 23 29 29 C 1.48501 * 111.00176 * 176.32247 * 13 3 2 30 30 H 1.08998 * 109.46911 * 174.61763 * 1 2 3 31 31 H 1.09001 * 109.47318 * 294.61404 * 1 2 3 32 32 H 1.08997 * 109.47040 * 54.61666 * 1 2 3 33 33 H 1.08997 * 109.47018 * 240.00016 * 2 1 3 34 34 H 1.09003 * 109.46970 * 119.99631 * 2 1 3 35 35 H 0.97003 * 120.00103 * 180.02562 * 8 7 5 36 36 H 1.09005 * 110.38200 * 40.50625 * 14 13 3 37 37 H 1.09003 * 110.38464 * 278.14214 * 14 13 3 38 38 H 1.08999 * 110.35027 * 31.73920 * 17 15 14 39 39 H 1.09004 * 110.35145 * 154.01491 * 17 15 14 40 40 H 1.08999 * 110.35135 * 281.89238 * 19 18 17 41 41 H 1.09002 * 110.43776 * 159.66446 * 19 18 17 42 42 H 1.08998 * 109.46658 * 57.60958 * 21 20 19 43 43 H 1.08996 * 109.46727 * 177.60790 * 21 20 19 44 44 H 1.09005 * 109.47182 * 300.00360 * 23 22 21 45 45 H 1.09004 * 109.47088 * 59.99342 * 23 22 21 46 46 H 1.09003 * 109.46696 * 90.00016 * 27 26 24 47 47 H 1.09002 * 109.46553 * 209.99547 * 27 26 24 48 48 H 1.08993 * 109.47519 * 329.99479 * 27 26 24 49 49 H 1.08993 * 109.46984 * 0.02562 * 28 26 24 50 50 H 1.08994 * 109.46536 * 120.00446 * 28 26 24 51 51 H 1.08998 * 109.46576 * 240.00269 * 28 26 24 52 52 H 1.09000 * 110.38980 * 319.48514 * 29 13 3 53 53 H 1.09002 * 110.38285 * 81.74559 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6368 1.9704 -0.8641 5 6 3.5454 1.4431 -0.0685 6 1 4.1219 1.8979 0.7235 7 6 4.1868 0.8630 -1.1423 8 7 3.4849 0.3096 -2.1071 9 14 6.0530 0.8631 -1.2270 10 1 6.6029 1.5439 -0.0272 11 1 6.5465 -0.5367 -1.2722 12 1 6.4930 1.5829 -2.4491 13 7 1.6056 2.1155 1.2314 14 6 2.1555 1.4356 2.4318 15 6 2.0859 2.4960 3.5501 16 1 2.9025 2.4051 4.2663 17 6 0.6904 2.4339 4.2076 18 8 -0.1374 3.3032 3.4053 19 6 0.6908 4.4477 3.1070 20 6 2.0863 3.8604 2.8046 21 6 3.2327 4.7750 3.2411 22 8 3.1649 6.0035 2.5143 23 6 4.1970 6.9339 2.8480 24 6 4.0289 8.1863 2.0271 25 8 3.1155 8.2736 1.2340 26 7 4.8942 9.2093 2.1735 27 6 4.7311 10.4267 1.3750 28 6 5.9979 9.1037 3.1312 29 6 2.1566 3.4924 1.3081 30 1 -0.3633 -1.0231 -0.0964 31 1 -0.3634 0.4280 0.9343 32 1 -0.3633 0.5951 -0.8378 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.9362 -0.0988 -2.8624 36 1 3.1886 1.1346 2.2577 37 1 1.5455 0.5702 2.6907 38 1 0.3049 1.4147 4.1832 39 1 0.7385 2.7974 5.2341 40 1 0.7388 5.1154 3.9672 41 1 0.3064 4.9792 2.2364 42 1 3.1483 4.9791 4.3085 43 1 4.1852 4.2853 3.0389 44 1 4.1332 7.1828 3.9073 45 1 5.1694 6.4887 2.6374 46 1 4.0927 11.1294 1.9105 47 1 5.7067 10.8811 1.2021 48 1 4.2728 10.1753 0.4187 49 1 5.9570 8.1340 3.6272 50 1 6.9469 9.2021 2.6041 51 1 5.9111 9.8963 3.8743 52 1 3.1899 3.5078 0.9615 53 1 1.5486 4.1780 0.7179 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167741.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:37 Heat of formation + Delta-G solvation = -124.772422 kcal Electronic energy + Delta-G solvation = -32065.466419 eV Core-core repulsion = 27937.093622 eV Total energy + Delta-G solvation = -4128.372797 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.69852 -40.92134 -38.51012 -38.25156 -36.59184 -35.40839 -33.70852 -32.24639 -31.68630 -30.35480 -28.52556 -28.18179 -26.84268 -26.60411 -25.78897 -25.63579 -23.74932 -22.19688 -20.98545 -20.65401 -19.97972 -18.62109 -18.35336 -17.60974 -17.51101 -17.27594 -16.78754 -16.43772 -16.36059 -16.31863 -15.99441 -15.66999 -15.04736 -14.90663 -14.72119 -14.45618 -14.27316 -14.19166 -14.06566 -13.50762 -13.48730 -13.38366 -13.27976 -13.22280 -13.07625 -12.89064 -12.74365 -12.55977 -12.48107 -12.31215 -12.14397 -11.97312 -11.79633 -11.73255 -11.53453 -11.45283 -11.24975 -11.00364 -10.87098 -10.66589 -10.45173 -10.37618 -9.75515 -8.94726 -8.02616 -6.24896 1.34905 1.36741 1.46402 1.49476 1.72689 2.39091 2.74303 3.14272 3.16861 3.48842 3.54213 3.64524 3.68847 3.99828 4.07227 4.16538 4.22507 4.25861 4.32011 4.34278 4.39713 4.44964 4.49884 4.54790 4.65969 4.68628 4.70964 4.75025 4.84381 4.87285 4.88318 4.90881 4.91863 4.98211 5.01235 5.02273 5.14343 5.15567 5.22937 5.25579 5.40158 5.42766 5.47658 5.61153 5.77487 6.01302 6.04512 6.08830 6.18396 6.31291 6.37618 6.54062 6.96565 7.09496 7.44825 8.93372 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009335 B = 0.003862 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2998.697331 B = 7248.167491 C = 9215.003587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.100 4.100 3 C 0.210 3.790 4 H -0.012 1.012 5 C -0.544 4.544 6 H 0.057 0.943 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.948 3.052 10 H -0.265 1.265 11 H -0.278 1.278 12 H -0.287 1.287 13 N -0.503 5.503 14 C 0.046 3.954 15 C -0.108 4.108 16 H 0.125 0.875 17 C 0.060 3.940 18 O -0.387 6.387 19 C 0.078 3.922 20 C -0.088 4.088 21 C 0.090 3.910 22 O -0.393 6.393 23 C 0.044 3.956 24 C 0.500 3.500 25 O -0.577 6.577 26 N -0.622 5.622 27 C 0.082 3.918 28 C 0.066 3.934 29 C 0.063 3.937 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.026 0.974 33 H 0.061 0.939 34 H 0.036 0.964 35 H 0.260 0.740 36 H 0.037 0.963 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.093 0.907 43 H 0.059 0.941 44 H 0.119 0.881 45 H 0.099 0.901 46 H 0.063 0.937 47 H 0.102 0.898 48 H 0.048 0.952 49 H 0.093 0.907 50 H 0.078 0.922 51 H 0.085 0.915 52 H 0.032 0.968 53 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.649 14.550 19.163 24.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.139 4.139 3 C 0.102 3.898 4 H 0.006 0.994 5 C -0.583 4.583 6 H 0.075 0.925 7 C -0.182 4.182 8 N -0.554 5.554 9 Si 0.774 3.226 10 H -0.189 1.189 11 H -0.204 1.204 12 H -0.214 1.214 13 N -0.226 5.226 14 C -0.082 4.082 15 C -0.127 4.127 16 H 0.143 0.857 17 C -0.016 4.016 18 O -0.306 6.306 19 C 0.001 3.999 20 C -0.089 4.089 21 C 0.014 3.986 22 O -0.312 6.312 23 C -0.035 4.035 24 C 0.288 3.712 25 O -0.456 6.456 26 N -0.357 5.357 27 C -0.060 4.060 28 C -0.075 4.075 29 C -0.065 4.065 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.090 0.910 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.111 0.889 43 H 0.077 0.923 44 H 0.136 0.864 45 H 0.117 0.883 46 H 0.081 0.919 47 H 0.120 0.880 48 H 0.067 0.933 49 H 0.111 0.889 50 H 0.097 0.903 51 H 0.104 0.896 52 H 0.051 0.949 53 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.228 14.497 18.347 23.961 hybrid contribution 2.118 -0.089 -1.142 2.408 sum 7.346 14.409 17.205 23.614 Atomic orbital electron populations 1.21555 0.96610 0.99477 1.00530 1.21378 0.94103 0.97891 1.00496 1.19125 0.91966 0.91393 0.87306 0.99410 1.21936 0.93533 1.36643 1.06161 0.92477 1.25674 1.02151 0.95001 0.95355 1.70039 1.36438 1.38580 1.10311 0.85661 0.81244 0.77777 0.77902 1.18900 1.20383 1.21369 1.65639 1.52820 1.01430 1.02703 1.22993 0.98338 0.96635 0.90274 1.23337 0.99981 0.92274 0.97144 0.85703 1.23491 0.88285 0.95638 0.94223 1.89115 1.36940 1.32406 1.72138 1.23160 0.88295 0.88433 1.00032 1.22600 0.95985 0.95048 0.95260 1.22437 0.96882 0.83131 0.96175 1.88023 1.50615 1.26942 1.65595 1.22433 0.93079 0.88045 0.99954 1.20980 0.81628 0.85476 0.83071 1.90728 1.34217 1.82100 1.38570 1.47876 1.29663 1.16041 1.42117 1.21726 1.03563 0.85486 0.95259 1.22210 0.88266 1.04805 0.92241 1.22743 0.97594 0.91380 0.94828 0.93400 0.92710 0.95501 0.92091 0.94558 0.93073 0.94443 0.90975 0.89015 0.89809 0.90667 0.91657 0.88905 0.92307 0.86389 0.88282 0.91888 0.87999 0.93264 0.88871 0.90305 0.89638 0.94947 0.94329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.39 9.71 71.98 0.70 -4.69 16 2 C -0.10 -4.98 5.05 30.60 0.15 -4.83 16 3 C 0.21 11.07 1.92 44.17 0.08 11.15 16 4 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 5 C -0.54 -29.79 6.51 25.60 0.17 -29.62 16 6 H 0.06 3.07 5.67 -2.91 -0.02 3.06 16 7 C 0.02 0.98 5.30 84.65 0.45 1.43 16 8 N -0.91 -53.80 11.30 21.45 0.24 -53.56 16 9 Si 0.95 43.74 29.54 68.60 2.03 45.77 16 10 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 13 N -0.50 -22.47 4.73 -861.49 -4.08 -26.55 16 14 C 0.05 1.70 4.59 86.42 0.40 2.10 16 15 C -0.11 -2.99 3.85 -9.04 -0.03 -3.02 16 16 H 0.13 2.55 7.96 -2.39 -0.02 2.53 16 17 C 0.06 1.53 7.05 72.45 0.51 2.04 16 18 O -0.39 -12.99 11.50 -148.98 -1.71 -14.71 16 19 C 0.08 2.43 6.49 72.45 0.47 2.90 16 20 C -0.09 -2.73 0.86 -50.42 -0.04 -2.77 16 21 C 0.09 2.19 5.00 71.98 0.36 2.55 16 22 O -0.39 -11.57 9.50 -129.94 -1.23 -12.80 16 23 C 0.04 0.88 4.73 71.23 0.34 1.21 16 24 C 0.50 13.08 7.75 87.65 0.68 13.76 16 25 O -0.58 -22.17 16.08 16.01 0.26 -21.91 16 26 N -0.62 -10.83 3.27 -871.90 -2.85 -13.69 16 27 C 0.08 1.29 10.48 127.77 1.34 2.63 16 28 C 0.07 0.45 10.60 127.77 1.35 1.81 16 29 C 0.06 2.71 5.06 86.42 0.44 3.15 16 30 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.05 2.28 7.85 -2.39 -0.02 2.26 16 32 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 3.41 6.00 -2.39 -0.01 3.39 16 34 H 0.04 1.72 6.81 -2.39 -0.02 1.70 16 35 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 36 H 0.04 1.54 6.16 -2.38 -0.01 1.53 16 37 H 0.07 2.60 6.95 -2.39 -0.02 2.59 16 38 H 0.09 2.31 7.50 -2.39 -0.02 2.29 16 39 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.08 1.91 8.01 -2.39 -0.02 1.89 16 41 H 0.07 2.38 7.51 -2.39 -0.02 2.36 16 42 H 0.09 1.47 8.14 -2.39 -0.02 1.46 16 43 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.12 1.33 7.79 -2.38 -0.02 1.31 16 45 H 0.10 1.55 7.79 -2.39 -0.02 1.53 16 46 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.10 0.92 8.07 -2.39 -0.02 0.90 16 48 H 0.05 1.08 7.42 -2.39 -0.02 1.06 16 49 H 0.09 0.38 5.76 -2.39 -0.01 0.37 16 50 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 51 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 52 H 0.03 1.55 5.80 -2.39 -0.01 1.53 16 53 H 0.04 1.84 7.51 -2.39 -0.02 1.82 16 Total: -1.00 -79.88 404.34 0.89 -78.99 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.88 Total: 18.66 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: 7.36 Total: -0.20 kcal Atomic # 7 Polarization: -87.10 SS G_CDS: -6.69 Total: -93.79 kcal Atomic # 8 Polarization: -46.73 SS G_CDS: -2.69 Total: -49.42 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -79.88 0.89 -78.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167741.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.786 kcal (2) G-P(sol) polarization free energy of solvation -79.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds