Wall clock time and date at job start Sat Apr 11 2020 06:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47044 * 2 1 4 4 H 1.09005 * 109.46340 * 180.98423 * 3 2 1 5 5 C 1.50698 * 109.46904 * 300.98124 * 3 2 1 6 6 H 1.08004 * 119.99448 * 120.00655 * 5 3 2 7 7 C 1.37873 * 120.00641 * 300.00085 * 5 3 2 8 8 N 1.31512 * 120.00540 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 119.99520 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47106 * 90.00098 * 9 7 5 11 11 H 1.48502 * 109.46944 * 209.99607 * 9 7 5 12 12 H 1.48498 * 109.47319 * 330.00038 * 9 7 5 13 13 N 1.46895 * 109.47157 * 60.98705 * 3 2 1 14 14 C 1.48502 * 111.00452 * 63.65752 * 13 3 2 15 15 C 1.54258 * 104.74291 * 159.33492 * 14 13 3 16 16 H 1.09002 * 112.14039 * 213.25037 * 15 14 13 17 17 C 1.54395 * 109.35701 * 86.82584 * 15 14 13 18 18 O 1.44375 * 104.92215 * 272.61519 * 17 15 14 19 19 C 1.45415 * 105.75006 * 319.67342 * 18 17 15 20 20 C 1.54388 * 104.41004 * 39.87093 * 19 18 17 21 21 C 1.53002 * 112.68195 * 213.97088 * 20 19 18 22 22 O 1.42906 * 109.46804 * 297.47828 * 21 20 19 23 23 C 1.42904 * 113.99632 * 179.97438 * 22 21 20 24 24 C 1.50700 * 109.46816 * 180.02562 * 23 22 21 25 25 O 1.21283 * 120.00155 * 359.97438 * 24 23 22 26 26 N 1.34778 * 119.99832 * 180.02562 * 24 23 22 27 27 C 1.46497 * 119.99736 * 179.97438 * 26 24 23 28 28 C 1.46504 * 119.99849 * 359.97438 * 26 24 23 29 29 C 1.48501 * 110.99853 * 179.05459 * 13 3 2 30 30 H 1.08996 * 109.46987 * 305.59049 * 1 2 3 31 31 H 1.09008 * 109.46732 * 65.58508 * 1 2 3 32 32 H 1.08998 * 109.47558 * 185.58559 * 1 2 3 33 33 H 1.09003 * 109.46796 * 239.99981 * 2 1 3 34 34 H 1.08998 * 109.46622 * 120.00259 * 2 1 3 35 35 H 0.96997 * 120.00523 * 180.02562 * 8 7 5 36 36 H 1.09011 * 110.38152 * 278.14976 * 14 13 3 37 37 H 1.09002 * 110.38455 * 40.51337 * 14 13 3 38 38 H 1.09002 * 110.34680 * 31.47927 * 17 15 14 39 39 H 1.08999 * 110.34781 * 153.64330 * 17 15 14 40 40 H 1.08994 * 110.15682 * 281.38986 * 19 18 17 41 41 H 1.09000 * 111.02391 * 158.78346 * 19 18 17 42 42 H 1.09003 * 109.47432 * 177.48299 * 21 20 19 43 43 H 1.08996 * 109.46868 * 57.47967 * 21 20 19 44 44 H 1.09000 * 109.46897 * 300.00221 * 23 22 21 45 45 H 1.09000 * 109.47206 * 60.00391 * 23 22 21 46 46 H 1.09003 * 109.47214 * 90.00002 * 27 26 24 47 47 H 1.09002 * 109.46972 * 209.99383 * 27 26 24 48 48 H 1.08996 * 109.47218 * 329.99649 * 27 26 24 49 49 H 1.08998 * 109.46485 * 90.00681 * 28 26 24 50 50 H 1.09001 * 109.46889 * 210.00453 * 28 26 24 51 51 H 1.08994 * 109.47432 * 330.00386 * 28 26 24 52 52 H 1.09000 * 110.39019 * 81.85862 * 29 13 3 53 53 H 1.08998 * 110.38278 * 319.49078 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4424 -0.0177 5 6 1.5179 2.1599 -1.2181 6 1 0.8988 3.0374 -1.1039 7 6 1.8306 1.6961 -2.4783 8 7 1.3754 2.3224 -3.5413 9 14 2.9010 0.1779 -2.6757 10 1 2.0413 -1.0323 -2.7144 11 1 3.6727 0.2775 -3.9405 12 1 3.8399 0.0817 -1.5292 13 7 1.5700 2.1281 1.2111 14 6 2.1369 1.5007 2.4319 15 6 2.0165 2.5849 3.5226 16 1 2.8368 2.5398 4.2389 17 6 0.6248 2.4923 4.1848 18 8 -0.2331 3.3131 3.3634 19 6 0.5553 4.4850 3.0173 20 6 1.9694 3.9294 2.7432 21 6 3.0759 4.8986 3.1641 22 8 2.9736 6.1002 2.3974 23 6 3.9661 7.0783 2.7146 24 6 3.7640 8.2971 1.8516 25 8 2.8594 8.3253 1.0442 26 7 4.5890 9.3555 1.9765 27 6 4.3929 10.5401 1.1372 28 6 5.6820 9.3212 2.9514 29 6 2.0654 3.5272 1.2569 30 1 -0.3633 0.5981 0.8357 31 1 -0.3633 0.4248 -0.9359 32 1 -0.3634 -1.0227 0.1000 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.5950 1.9959 -4.4278 36 1 1.5596 0.6183 2.7083 37 1 3.1824 1.2368 2.2726 38 1 0.2738 1.4603 4.1865 39 1 0.6628 2.8806 5.2025 40 1 0.5778 5.1830 3.8540 41 1 0.1602 4.9727 2.1261 42 1 4.0483 4.4380 2.9896 43 1 2.9698 5.1332 4.2232 44 1 3.8780 7.3580 3.7644 45 1 4.9571 6.6631 2.5311 46 1 3.7215 11.2354 1.6412 47 1 5.3535 11.0247 0.9626 48 1 3.9577 10.2417 0.1835 49 1 6.5757 8.9114 2.4809 50 1 5.8875 10.3325 3.3026 51 1 5.3961 8.6944 3.7960 52 1 1.4343 4.1738 0.6472 53 1 3.0999 3.5749 0.9168 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255167742.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:42 Heat of formation + Delta-G solvation = -90.717690 kcal Electronic energy + Delta-G solvation = -31997.147819 eV Core-core repulsion = 27870.251747 eV Total energy + Delta-G solvation = -4126.896073 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.44410 -39.95168 -37.51228 -36.73885 -35.70863 -34.00754 -31.91116 -31.03780 -30.34625 -29.47950 -27.66568 -26.84168 -25.80820 -25.50569 -24.92824 -23.67922 -22.51964 -20.88955 -19.79722 -19.36131 -18.77157 -17.45726 -16.74323 -16.69538 -16.49356 -15.97518 -15.55491 -15.46448 -15.35106 -15.11449 -14.62321 -14.26290 -13.89424 -13.73807 -13.48007 -13.20188 -13.03371 -12.98960 -12.89288 -12.68119 -12.56868 -12.43996 -12.36744 -12.27689 -12.12916 -11.49462 -11.15140 -11.04476 -10.96268 -10.75258 -10.56747 -10.51859 -10.38347 -10.27688 -9.96641 -9.92878 -9.86874 -9.73927 -9.32413 -9.16889 -8.98751 -8.86027 -8.44385 -7.37861 -5.96738 -3.93636 2.44401 2.48901 3.31891 3.39901 3.42428 3.58312 4.20227 4.33358 4.47013 4.60033 4.63274 4.77134 4.82648 4.84401 4.91149 4.97592 5.03251 5.08866 5.15201 5.21853 5.27758 5.31128 5.31909 5.35117 5.44855 5.58900 5.64742 5.73213 5.90998 5.95449 6.04682 6.10628 6.12493 6.18710 6.23867 6.24968 6.33548 6.42115 6.53369 6.71440 6.79963 6.87779 6.98334 7.09170 7.16103 7.17891 7.20328 7.55480 7.62782 7.98007 8.00580 8.05516 8.73696 9.12961 9.65226 11.16335 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010475 B = 0.003588 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.328545 B = 7800.962097 C = 9551.640569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.117 4.117 3 C 0.176 3.824 4 H -0.005 1.005 5 C -0.494 4.494 6 H 0.082 0.918 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.880 3.120 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.271 1.271 13 N -0.479 5.479 14 C 0.036 3.964 15 C -0.118 4.118 16 H 0.088 0.912 17 C 0.063 3.937 18 O -0.359 6.359 19 C 0.075 3.925 20 C -0.098 4.098 21 C 0.086 3.914 22 O -0.352 6.352 23 C 0.047 3.953 24 C 0.511 3.489 25 O -0.504 6.504 26 N -0.628 5.628 27 C 0.087 3.913 28 C 0.076 3.924 29 C 0.075 3.925 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.019 0.981 33 H 0.043 0.957 34 H 0.031 0.969 35 H 0.262 0.738 36 H 0.077 0.923 37 H 0.032 0.968 38 H 0.090 0.910 39 H 0.047 0.953 40 H 0.048 0.952 41 H 0.099 0.901 42 H 0.054 0.946 43 H 0.051 0.949 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.054 0.946 47 H 0.069 0.931 48 H 0.079 0.921 49 H 0.059 0.941 50 H 0.074 0.926 51 H 0.071 0.929 52 H 0.090 0.910 53 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.051 10.443 19.862 24.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.154 4.154 3 C 0.069 3.931 4 H 0.013 0.987 5 C -0.532 4.532 6 H 0.100 0.900 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.711 3.289 10 H -0.205 1.205 11 H -0.226 1.226 12 H -0.197 1.197 13 N -0.203 5.203 14 C -0.092 4.092 15 C -0.137 4.137 16 H 0.106 0.894 17 C -0.015 4.015 18 O -0.277 6.277 19 C -0.002 4.002 20 C -0.099 4.099 21 C 0.009 3.991 22 O -0.270 6.270 23 C -0.033 4.033 24 C 0.297 3.703 25 O -0.376 6.376 26 N -0.365 5.365 27 C -0.056 4.056 28 C -0.067 4.067 29 C -0.053 4.053 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.038 0.962 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.051 0.949 38 H 0.108 0.892 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.118 0.882 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.098 0.902 49 H 0.077 0.923 50 H 0.093 0.907 51 H 0.090 0.910 52 H 0.108 0.892 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 8.571 10.393 18.958 23.257 hybrid contribution 2.291 -0.841 0.034 2.440 sum 10.862 9.553 18.992 23.873 Atomic orbital electron populations 1.21482 0.95140 0.98020 1.03659 1.21811 0.97751 0.97844 0.98042 1.19913 0.92707 0.91150 0.89371 0.98722 1.20876 1.31606 1.13050 0.87703 0.89956 1.24874 0.95592 0.96552 0.95936 1.69883 1.45561 1.40332 0.97915 0.86971 0.81035 0.84258 0.76615 1.20471 1.22630 1.19692 1.65345 1.53139 1.00869 1.00940 1.23110 0.97604 0.96641 0.91870 1.23261 0.98458 0.94490 0.97478 0.89382 1.23235 0.88829 0.96533 0.92862 1.89296 1.36090 1.32837 1.69447 1.23430 0.88765 0.87804 1.00196 1.22706 0.95217 0.93348 0.98653 1.22404 0.98111 0.84625 0.93923 1.88098 1.51321 1.25377 1.62184 1.22177 0.93786 0.89259 0.98047 1.20349 0.82054 0.83711 0.84167 1.90794 1.30720 1.80711 1.35410 1.47687 1.31827 1.16833 1.40189 1.21639 1.01581 0.86429 0.95921 1.21841 0.89630 1.03260 0.91944 1.22773 0.99070 0.91897 0.91516 0.91877 0.91630 0.96163 0.93900 0.95047 0.92775 0.90458 0.94943 0.89195 0.93478 0.93378 0.88248 0.92781 0.93070 0.90584 0.90392 0.92704 0.91201 0.90202 0.92277 0.90750 0.91013 0.89200 0.94511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.47 37.16 0.35 -2.41 16 2 C -0.12 -2.64 5.01 -26.73 -0.13 -2.77 16 3 C 0.18 4.26 1.12 -68.87 -0.08 4.18 16 4 H 0.00 -0.12 7.03 -51.93 -0.37 -0.48 16 5 C -0.49 -14.07 7.48 -34.44 -0.26 -14.33 16 6 H 0.08 2.61 7.25 -52.48 -0.38 2.23 16 7 C 0.07 2.11 5.45 -17.82 -0.10 2.01 16 8 N -0.90 -28.11 13.96 55.43 0.77 -27.33 16 9 Si 0.88 22.53 24.36 -169.99 -4.14 18.39 16 10 H -0.28 -6.95 6.88 56.52 0.39 -6.56 16 11 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 12 H -0.27 -6.69 6.53 56.52 0.37 -6.32 16 13 N -0.48 -10.05 4.28 -223.65 -0.96 -11.00 16 14 C 0.04 0.61 4.93 -2.28 -0.01 0.60 16 15 C -0.12 -1.60 3.81 -87.91 -0.33 -1.93 16 16 H 0.09 0.94 7.96 -51.93 -0.41 0.53 16 17 C 0.06 0.84 7.09 37.89 0.27 1.11 16 18 O -0.36 -6.20 11.56 -35.23 -0.41 -6.61 16 19 C 0.07 1.19 6.57 37.88 0.25 1.44 16 20 C -0.10 -1.50 0.85 -151.80 -0.13 -1.63 16 21 C 0.09 1.07 4.97 37.16 0.18 1.25 16 22 O -0.35 -5.19 9.48 -55.14 -0.52 -5.71 16 23 C 0.05 0.50 4.97 36.01 0.18 0.68 16 24 C 0.51 6.73 7.75 -10.98 -0.09 6.64 16 25 O -0.50 -9.36 16.08 -14.36 -0.23 -9.59 16 26 N -0.63 -5.87 3.27 -189.52 -0.62 -6.49 16 27 C 0.09 0.72 10.44 59.85 0.62 1.34 16 28 C 0.08 0.37 10.24 59.85 0.61 0.98 16 29 C 0.08 1.52 4.51 -2.27 -0.01 1.51 16 30 H 0.06 1.37 7.47 -51.93 -0.39 0.98 16 31 H 0.06 1.61 7.40 -51.92 -0.38 1.23 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.04 1.02 3.29 -51.93 -0.17 0.85 16 34 H 0.03 0.62 6.98 -51.93 -0.36 0.26 16 35 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 36 H 0.08 1.24 7.05 -51.92 -0.37 0.88 16 37 H 0.03 0.54 7.92 -51.93 -0.41 0.13 16 38 H 0.09 1.16 7.54 -51.93 -0.39 0.77 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.05 0.67 7.99 -51.93 -0.41 0.25 16 41 H 0.10 1.79 7.48 -51.93 -0.39 1.40 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.56 7.40 -51.93 -0.38 0.17 16 45 H 0.08 0.66 8.11 -51.93 -0.42 0.24 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.38 8.07 -51.93 -0.42 -0.04 16 48 H 0.08 0.85 7.42 -51.93 -0.39 0.46 16 49 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 50 H 0.07 0.23 8.07 -51.93 -0.42 -0.19 16 51 H 0.07 0.25 6.44 -51.93 -0.33 -0.08 16 52 H 0.09 2.09 6.79 -51.93 -0.35 1.73 16 53 H 0.04 0.78 7.81 -51.93 -0.41 0.37 16 LS Contribution 400.79 15.07 6.04 6.04 Total: -1.00 -36.54 400.79 -8.01 -44.54 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -9.28 Total: -0.93 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 1.33 Total: -1.31 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: -0.80 Total: -44.82 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -1.16 Total: -21.91 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.14 Total: 18.39 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.54 -8.01 -44.54 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167742.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.173 kcal (2) G-P(sol) polarization free energy of solvation -36.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds