Wall clock time and date at job start Sat Apr 11 2020 06:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47152 * 2 1 4 4 H 1.08998 * 109.47525 * 56.41164 * 3 2 1 5 5 C 1.50704 * 109.47105 * 176.41469 * 3 2 1 6 6 H 1.07997 * 119.99787 * 120.00085 * 5 3 2 7 7 C 1.37876 * 119.99801 * 299.99825 * 5 3 2 8 8 N 1.31516 * 119.99854 * 180.02562 * 7 5 3 9 9 Si 1.86799 * 120.00231 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47002 * 89.99934 * 9 7 5 11 11 H 1.48495 * 109.47231 * 210.00137 * 9 7 5 12 12 H 1.48500 * 109.47129 * 330.00312 * 9 7 5 13 13 N 1.46902 * 109.47073 * 296.41357 * 3 2 1 14 14 C 1.46847 * 111.00309 * 174.38804 * 13 3 2 15 15 C 1.53080 * 109.49530 * 186.12755 * 14 13 3 16 16 C 1.52887 * 109.26699 * 301.28270 * 15 14 13 17 17 C 1.54171 * 109.49804 * 177.27606 * 16 15 14 18 18 C 1.55356 * 102.18838 * 98.54877 * 17 16 15 19 19 H 1.09006 * 111.11755 * 276.02534 * 18 17 16 20 20 O 1.42902 * 111.15359 * 151.89596 * 18 17 16 21 21 C 1.42901 * 114.00000 * 156.94472 * 20 18 17 22 22 C 1.50700 * 109.46999 * 179.97438 * 21 20 18 23 23 O 1.21276 * 120.00215 * 359.97438 * 22 21 20 24 24 N 1.34777 * 119.99840 * 179.97438 * 22 21 20 25 25 C 1.46500 * 120.00030 * 179.97438 * 24 22 21 26 26 C 1.54957 * 100.97094 * 33.95175 * 18 17 16 27 27 O 1.43014 * 110.06648 * 295.64912 * 16 15 14 28 28 C 1.52887 * 109.84215 * 56.99845 * 16 15 14 29 29 C 1.46843 * 110.99815 * 298.69648 * 13 3 2 30 30 H 1.08995 * 109.47116 * 305.07703 * 1 2 3 31 31 H 1.09004 * 109.46658 * 65.07824 * 1 2 3 32 32 H 1.08996 * 109.46999 * 185.07379 * 1 2 3 33 33 H 1.09000 * 109.47499 * 239.99277 * 2 1 3 34 34 H 1.09007 * 109.46806 * 119.99649 * 2 1 3 35 35 H 0.96999 * 119.99932 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.45959 * 306.13755 * 14 13 3 37 37 H 1.08999 * 109.46339 * 66.11597 * 14 13 3 38 38 H 1.09010 * 109.50575 * 181.34369 * 15 14 13 39 39 H 1.09000 * 109.54336 * 61.24640 * 15 14 13 40 40 H 1.08999 * 110.85699 * 216.72203 * 17 16 15 41 41 H 1.08995 * 110.85730 * 340.37318 * 17 16 15 42 42 H 1.09004 * 109.46877 * 299.99460 * 21 20 18 43 43 H 1.08995 * 109.47531 * 59.99382 * 21 20 18 44 44 H 0.97007 * 119.99683 * 0.02562 * 24 22 21 45 45 H 1.09000 * 109.47017 * 180.02562 * 25 24 22 46 46 H 1.08993 * 109.47190 * 299.99808 * 25 24 22 47 47 H 1.08995 * 109.46978 * 60.00072 * 25 24 22 48 48 H 1.09002 * 110.31144 * 204.75759 * 26 18 17 49 49 H 1.09002 * 110.39298 * 82.62666 * 26 18 17 50 50 H 1.09010 * 109.50087 * 183.07032 * 28 16 15 51 51 H 1.08991 * 109.50928 * 62.93905 * 28 16 15 52 52 H 1.09003 * 109.46703 * 293.87504 * 29 13 3 53 53 H 1.09001 * 109.46527 * 53.86885 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6252 1.9745 0.8560 5 6 3.5444 1.4433 0.0889 6 1 4.1315 1.8943 -0.6975 7 6 4.1712 0.8684 1.1740 8 7 5.4841 0.8697 1.2518 9 14 3.1557 0.0891 2.5344 10 1 2.9266 -1.3444 2.2218 11 1 3.8837 0.2044 3.8236 12 1 1.8496 0.7877 2.6393 13 7 1.6224 2.1095 -1.2404 14 6 1.9790 3.5338 -1.2179 15 6 1.3961 4.2260 -2.4526 16 6 1.9425 3.5543 -3.7126 17 6 1.3062 4.2024 -4.9584 18 6 2.4070 5.2034 -5.4057 19 1 2.3332 6.1406 -4.8539 20 8 2.3527 5.4337 -6.8150 21 6 2.9380 6.6713 -7.2247 22 6 2.8262 6.8088 -8.7212 23 8 2.2978 5.9330 -9.3728 24 7 3.3133 7.9050 -9.3355 25 6 3.2052 8.0385 -10.7904 26 6 3.6891 4.4254 -5.0159 27 8 3.3577 3.7433 -3.7951 28 6 1.6129 2.0615 -3.6895 29 6 2.1893 1.4368 -2.4162 30 1 -0.3633 0.5905 0.8410 31 1 -0.3633 0.4331 -0.9320 32 1 -0.3633 -1.0236 0.0909 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 5.9251 0.4649 2.0151 36 1 1.5740 3.9954 -0.3174 37 1 3.0641 3.6366 -1.2221 38 1 1.6808 5.2782 -2.4484 39 1 0.3093 4.1431 -2.4380 40 1 1.1217 3.4572 -5.7321 41 1 0.3876 4.7273 -4.6964 42 1 2.4146 7.4975 -6.7434 43 1 3.9888 6.6895 -6.9360 44 1 3.7363 8.6054 -8.8142 45 1 3.6515 8.9825 -11.1028 46 1 3.7295 7.2126 -11.2709 47 1 2.1545 8.0195 -11.0798 48 1 4.5156 5.1166 -4.8506 49 1 3.9479 3.7060 -5.7929 50 1 2.0516 1.5784 -4.5626 51 1 0.5314 1.9273 -3.7034 52 1 3.2731 1.5522 -2.4133 53 1 1.9367 0.3769 -2.3853 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167933.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:45 Heat of formation + Delta-G solvation = -139.934518 kcal Electronic energy + Delta-G solvation = -31244.061028 eV Core-core repulsion = 27115.030753 eV Total energy + Delta-G solvation = -4129.030275 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.54971 -40.72463 -39.36070 -38.06266 -35.67082 -35.62580 -34.04656 -32.91720 -31.90527 -31.43883 -29.78743 -29.00169 -27.04750 -26.48571 -24.54885 -24.31777 -23.11861 -22.43804 -21.71842 -21.27345 -20.42284 -18.73765 -18.49083 -18.25681 -17.55861 -17.05303 -16.84843 -16.66327 -16.12217 -15.91837 -15.84930 -15.62605 -15.39976 -15.18507 -14.96886 -14.61481 -14.40472 -14.31948 -14.07386 -13.82124 -13.65655 -13.49829 -13.39168 -13.13382 -13.09308 -12.99821 -12.91672 -12.54284 -12.45155 -12.32094 -12.18493 -11.98475 -11.91564 -11.59815 -11.47494 -11.36422 -11.10842 -11.01609 -10.92321 -10.67528 -10.63803 -10.31800 -10.18264 -8.85254 -8.29404 -6.32928 1.29680 1.34496 1.45620 1.52190 1.77633 2.31414 2.70172 3.05438 3.09721 3.37277 3.41823 3.73476 3.77074 3.81379 3.99943 4.07047 4.13065 4.22110 4.28725 4.33644 4.42098 4.46163 4.49139 4.61038 4.62808 4.65492 4.66456 4.68921 4.74256 4.76871 4.80283 4.93868 4.94494 4.97101 4.99009 5.09664 5.11715 5.19552 5.26050 5.32161 5.34983 5.36851 5.41433 5.50574 5.59060 5.66066 5.98001 6.21060 6.22917 6.44363 6.51843 6.57291 6.77060 7.20646 7.34546 8.87582 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.026150 B = 0.002243 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.498201 B =12479.469550 C =13023.244274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.123 4.123 3 C 0.183 3.817 4 H 0.032 0.968 5 C -0.531 4.531 6 H 0.030 0.970 7 C 0.010 3.990 8 N -0.951 5.951 9 Si 0.951 3.049 10 H -0.269 1.269 11 H -0.302 1.302 12 H -0.243 1.243 13 N -0.510 5.510 14 C 0.065 3.935 15 C -0.103 4.103 16 C 0.108 3.892 17 C -0.131 4.131 18 C 0.066 3.934 19 H 0.110 0.890 20 O -0.372 6.372 21 C 0.036 3.964 22 C 0.506 3.494 23 O -0.578 6.578 24 N -0.719 5.719 25 C 0.084 3.916 26 C 0.022 3.978 27 O -0.388 6.388 28 C -0.110 4.110 29 C 0.068 3.932 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.033 0.967 35 H 0.263 0.737 36 H 0.063 0.937 37 H 0.004 0.996 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.113 0.887 42 H 0.117 0.883 43 H 0.106 0.894 44 H 0.423 0.577 45 H 0.115 0.885 46 H 0.046 0.954 47 H 0.049 0.951 48 H 0.097 0.903 49 H 0.053 0.947 50 H 0.063 0.937 51 H 0.096 0.904 52 H 0.001 0.999 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.373 17.452 -18.150 26.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.161 4.161 3 C 0.074 3.926 4 H 0.050 0.950 5 C -0.570 4.570 6 H 0.048 0.952 7 C -0.188 4.188 8 N -0.592 5.592 9 Si 0.778 3.222 10 H -0.195 1.195 11 H -0.230 1.230 12 H -0.166 1.166 13 N -0.233 5.233 14 C -0.064 4.064 15 C -0.141 4.141 16 C 0.069 3.931 17 C -0.169 4.169 18 C 0.008 3.992 19 H 0.128 0.872 20 O -0.291 6.291 21 C -0.043 4.043 22 C 0.292 3.708 23 O -0.457 6.457 24 N -0.373 5.373 25 C -0.060 4.060 26 C -0.055 4.055 27 O -0.308 6.308 28 C -0.148 4.148 29 C -0.060 4.060 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.022 0.978 38 H 0.100 0.900 39 H 0.117 0.883 40 H 0.100 0.900 41 H 0.131 0.869 42 H 0.135 0.865 43 H 0.124 0.876 44 H 0.260 0.740 45 H 0.134 0.866 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.115 0.885 49 H 0.072 0.928 50 H 0.082 0.918 51 H 0.115 0.885 52 H 0.020 0.980 53 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.073 16.566 -18.550 26.833 hybrid contribution 1.946 -0.254 1.065 2.233 sum -8.126 16.313 -17.486 25.257 Atomic orbital electron populations 1.21618 0.93889 1.00889 1.02456 1.21877 0.97066 0.97449 0.99698 1.19614 0.91141 0.92049 0.89758 0.95017 1.21900 0.92948 1.36432 1.05766 0.95198 1.25895 0.95694 0.96456 1.00706 1.70093 1.10189 1.47141 1.31760 0.85811 0.79503 0.79472 0.77373 1.19504 1.22973 1.16649 1.62398 1.56980 1.01984 1.01961 1.21822 0.97077 0.89171 0.98332 1.21874 1.01429 0.98905 0.91845 1.21981 0.80482 0.95250 0.95388 1.23142 0.99046 0.98614 0.96078 1.23862 0.94339 0.99553 0.81422 0.87228 1.88023 1.80223 1.38524 1.22320 1.22537 1.01578 0.88823 0.91360 1.20822 0.77612 0.81878 0.90475 1.90731 1.44823 1.42080 1.68034 1.45604 1.60713 1.21461 1.09539 1.21679 1.01941 1.03494 0.78880 1.23969 0.98723 0.95868 0.86972 1.88606 1.23606 1.78627 1.39995 1.21902 1.02208 0.94370 0.96326 1.21802 0.95742 0.97976 0.90503 0.93407 0.91112 0.92614 0.92833 0.94919 0.92827 0.91827 0.97784 0.90041 0.88295 0.89965 0.86875 0.86492 0.87630 0.74019 0.86631 0.93532 0.93222 0.88514 0.92847 0.91838 0.88526 0.98038 0.91719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.37 9.72 71.98 0.70 -3.67 16 2 C -0.12 -5.24 4.71 30.59 0.14 -5.10 16 3 C 0.18 8.62 1.35 44.17 0.06 8.68 16 4 H 0.03 1.54 7.12 -2.39 -0.02 1.52 16 5 C -0.53 -30.88 7.78 25.60 0.20 -30.68 16 6 H 0.03 1.99 6.09 -2.91 -0.02 1.98 16 7 C 0.01 0.57 5.45 84.65 0.46 1.03 16 8 N -0.95 -61.36 13.96 21.45 0.30 -61.06 16 9 Si 0.95 46.20 24.40 68.60 1.67 47.88 16 10 H -0.27 -12.52 6.84 99.48 0.68 -11.84 16 11 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 12 H -0.24 -10.84 6.53 99.48 0.65 -10.19 16 13 N -0.51 -20.64 4.11 -875.33 -3.60 -24.24 16 14 C 0.06 2.48 5.01 86.34 0.43 2.91 16 15 C -0.10 -2.82 4.94 30.58 0.15 -2.67 16 16 C 0.11 3.04 0.79 -10.47 -0.01 3.03 16 17 C -0.13 -2.80 5.82 31.80 0.18 -2.61 16 18 C 0.07 1.30 3.54 32.07 0.11 1.41 16 19 H 0.11 1.53 7.91 -2.38 -0.02 1.51 16 20 O -0.37 -8.07 9.70 -129.94 -1.26 -9.33 16 21 C 0.04 0.47 6.30 71.24 0.45 0.92 16 22 C 0.51 9.15 7.91 87.66 0.69 9.85 16 23 O -0.58 -17.30 16.50 16.02 0.26 -17.04 16 24 N -0.72 -6.72 5.71 -484.54 -2.77 -9.49 16 25 C 0.08 0.72 10.70 127.77 1.37 2.09 16 26 C 0.02 0.55 7.52 72.65 0.55 1.09 16 27 O -0.39 -13.20 9.79 -148.98 -1.46 -14.65 16 28 C -0.11 -3.40 4.95 30.59 0.15 -3.24 16 29 C 0.07 2.75 4.69 86.34 0.40 3.15 16 30 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 2.21 7.86 -2.38 -0.02 2.19 16 32 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.05 2.31 6.13 -2.39 -0.01 2.30 16 34 H 0.03 1.47 3.22 -2.38 -0.01 1.46 16 35 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 36 H 0.06 2.37 8.06 -2.39 -0.02 2.35 16 37 H 0.00 0.18 6.72 -2.39 -0.02 0.16 16 38 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.10 2.28 8.12 -2.39 -0.02 2.26 16 40 H 0.08 1.89 7.83 -2.39 -0.02 1.87 16 41 H 0.11 1.85 7.78 -2.39 -0.02 1.84 16 42 H 0.12 0.71 8.11 -2.38 -0.02 0.70 16 43 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.42 0.53 8.83 -92.70 -0.82 -0.29 16 45 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 46 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 49 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 50 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 51 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 52 H 0.00 0.06 6.32 -2.39 -0.02 0.05 16 53 H 0.06 2.59 5.96 -2.39 -0.01 2.58 16 Total: -1.00 -84.34 399.79 -0.80 -85.15 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.00 Total: 16.59 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: 6.05 Total: -13.80 kcal Atomic # 7 Polarization: -88.72 SS G_CDS: -6.07 Total: -94.79 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -2.46 Total: -41.03 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.67 Total: 47.88 kcal Total: -84.34 -0.80 -85.15 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167933.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.788 kcal (2) G-P(sol) polarization free energy of solvation -84.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds