Wall clock time and date at job start Sat Apr 11 2020 06:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46850 * 2 1 4 4 H 1.08996 * 109.47246 * 182.76819 * 3 2 1 5 5 C 1.50698 * 109.47300 * 62.76204 * 3 2 1 6 6 H 1.07993 * 120.00604 * 242.68392 * 5 3 2 7 7 C 1.37879 * 119.99783 * 62.68344 * 5 3 2 8 8 N 1.31515 * 120.00187 * 195.35200 * 7 5 3 9 9 Si 1.86807 * 119.99998 * 15.08145 * 7 5 3 10 10 H 1.48503 * 109.47000 * 95.26594 * 9 7 5 11 11 H 1.48493 * 109.47485 * 215.26744 * 9 7 5 12 12 H 1.48503 * 109.46733 * 335.26986 * 9 7 5 13 13 N 1.46905 * 109.47218 * 302.76520 * 3 2 1 14 14 C 1.46848 * 110.99856 * 304.80268 * 13 3 2 15 15 C 1.53041 * 109.59697 * 173.92166 * 14 13 3 16 16 C 1.53171 * 109.23830 * 59.44516 * 15 14 13 17 17 C 1.52858 * 109.14964 * 302.81456 * 16 15 14 18 18 C 1.53862 * 109.72228 * 177.78770 * 17 16 15 19 19 C 1.54871 * 104.09099 * 121.40461 * 18 17 16 20 20 H 1.09001 * 110.90508 * 262.66502 * 19 18 17 21 21 O 1.42894 * 110.90599 * 139.05936 * 19 18 17 22 22 C 1.42899 * 114.00111 * 149.99893 * 21 19 18 23 23 C 1.50697 * 109.47434 * 180.02562 * 22 21 19 24 24 O 1.21289 * 119.99940 * 359.97438 * 23 22 21 25 25 N 1.34780 * 120.00129 * 180.02562 * 23 22 21 26 26 C 1.46500 * 119.99866 * 180.02562 * 25 23 22 27 27 C 1.55015 * 102.09746 * 20.86169 * 19 18 17 28 28 O 1.43503 * 109.85593 * 295.84225 * 17 16 15 29 29 C 1.46896 * 111.00096 * 180.62854 * 13 3 2 30 30 H 1.08999 * 109.46471 * 183.88319 * 1 2 3 31 31 H 1.08999 * 109.47362 * 303.88306 * 1 2 3 32 32 H 1.08998 * 109.47048 * 63.88544 * 1 2 3 33 33 H 1.09002 * 109.47111 * 240.00372 * 2 1 3 34 34 H 1.08995 * 109.47531 * 119.99603 * 2 1 3 35 35 H 0.97001 * 119.99730 * 179.72352 * 8 7 5 36 36 H 1.08996 * 109.44817 * 293.96115 * 14 13 3 37 37 H 1.09006 * 109.44924 * 53.88499 * 14 13 3 38 38 H 1.08999 * 109.50769 * 299.51567 * 15 14 13 39 39 H 1.09003 * 109.51010 * 179.37527 * 15 14 13 40 40 H 1.09004 * 109.52601 * 182.91504 * 16 15 14 41 41 H 1.08993 * 109.58326 * 62.74536 * 16 15 14 42 42 H 1.08994 * 110.50548 * 240.05982 * 18 17 16 43 43 H 1.09004 * 110.49806 * 2.61850 * 18 17 16 44 44 H 1.09004 * 109.47068 * 300.00446 * 22 21 19 45 45 H 1.09005 * 109.47189 * 60.00187 * 22 21 19 46 46 H 0.96997 * 119.99679 * 359.97438 * 25 23 22 47 47 H 1.09001 * 109.47646 * 59.99384 * 26 25 23 48 48 H 1.09001 * 109.46892 * 179.97438 * 26 25 23 49 49 H 1.09004 * 109.47033 * 299.99129 * 26 25 23 50 50 H 1.08998 * 110.61223 * 81.63647 * 27 19 18 51 51 H 1.09004 * 110.60836 * 204.45808 * 27 19 18 52 52 H 1.09001 * 109.46324 * 305.32114 * 29 13 3 53 53 H 1.08999 * 109.46812 * 65.29502 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1288 1.4430 -0.0496 5 6 1.5943 2.1329 1.2632 6 1 0.9346 2.9862 1.2084 7 6 2.0288 1.6751 2.4891 8 7 1.4225 2.0648 3.5892 9 14 3.4739 0.4955 2.5869 10 1 4.7221 1.2612 2.8340 11 1 3.2545 -0.4653 3.6977 12 1 3.5941 -0.2472 1.3065 13 7 1.4965 2.1541 -1.1647 14 6 1.8153 1.4450 -2.4104 15 6 1.1093 2.1272 -3.5845 16 6 1.5759 3.5831 -3.6770 17 6 1.2915 4.2861 -2.3498 18 6 1.8056 5.7351 -2.4090 19 6 0.5453 6.5937 -2.1387 20 1 0.1068 6.9455 -3.0726 21 8 0.8512 7.6908 -1.2758 22 6 0.0387 8.8459 -1.4939 23 6 0.4461 9.9349 -0.5352 24 8 1.3436 9.7408 0.2572 25 7 -0.1876 11.1242 -0.5576 26 6 0.2088 12.1831 0.3740 27 6 -0.3930 5.5806 -1.4342 28 8 -0.1240 4.3379 -2.1192 29 6 1.9778 3.5414 -1.2058 30 1 -0.3632 -1.0253 0.0696 31 1 -0.3634 0.5729 0.8531 32 1 -0.3633 0.4523 -0.9227 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 1.7256 1.7395 4.4512 36 1 2.8928 1.4647 -2.5737 37 1 1.4787 0.4109 -2.3358 38 1 0.0312 2.0997 -3.4266 39 1 1.3558 1.6064 -4.5098 40 1 1.0377 4.0880 -4.4792 41 1 2.6460 3.6115 -3.8821 42 1 2.5565 5.9056 -1.6376 43 1 2.2155 5.9546 -3.3949 44 1 0.1713 9.1953 -2.5178 45 1 -1.0082 8.5900 -1.3300 46 1 -0.9056 11.2793 -1.1911 47 1 1.2554 12.4392 0.2091 48 1 -0.4110 13.0641 0.2077 49 1 0.0772 11.8340 1.3982 50 1 -0.1431 5.4977 -0.3765 51 1 -1.4357 5.8724 -1.5592 52 1 1.7466 4.0341 -0.2614 53 1 3.0562 3.5472 -1.3639 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255168586.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:13 Heat of formation + Delta-G solvation = -136.483417 kcal Electronic energy + Delta-G solvation = -31842.771715 eV Core-core repulsion = 27713.891091 eV Total energy + Delta-G solvation = -4128.880624 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.51792 -40.73071 -39.26016 -37.97385 -35.87313 -35.66847 -33.98579 -32.66688 -32.45756 -31.02031 -29.60172 -28.80723 -26.78907 -26.46158 -25.55468 -24.27355 -23.00275 -22.39345 -21.74777 -20.94752 -20.26120 -18.56027 -18.49374 -18.26832 -17.41754 -17.08281 -16.90019 -16.71392 -16.26091 -16.07168 -15.75464 -15.40778 -15.36473 -15.14816 -14.82307 -14.71389 -14.52415 -14.23264 -14.06731 -13.85866 -13.71674 -13.48689 -13.43298 -13.21092 -13.10828 -12.95717 -12.72967 -12.56404 -12.47084 -12.36261 -12.12201 -11.98096 -11.79159 -11.60517 -11.51732 -11.30640 -11.14585 -10.98651 -10.77642 -10.70570 -10.53416 -10.28288 -10.18751 -8.81952 -8.26989 -6.22376 1.28545 1.32811 1.41879 1.52167 1.80879 2.34087 2.73169 3.05728 3.17750 3.35713 3.50194 3.68346 3.79138 3.81526 4.04869 4.09699 4.19569 4.21573 4.26745 4.31243 4.37708 4.44741 4.48516 4.50647 4.56980 4.59027 4.65972 4.73107 4.75154 4.78945 4.84721 4.85265 4.92905 4.96648 5.01042 5.05362 5.10083 5.15005 5.23853 5.29698 5.36163 5.37377 5.44406 5.56588 5.73182 5.83294 5.95830 6.11719 6.16928 6.49732 6.53668 6.80139 6.84377 7.22322 7.39100 8.90246 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011429 B = 0.003275 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.256095 B = 8548.445779 C =10242.541720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.115 4.115 3 C 0.193 3.807 4 H -0.022 1.022 5 C -0.491 4.491 6 H 0.028 0.972 7 C 0.017 3.983 8 N -0.943 5.943 9 Si 0.921 3.079 10 H -0.285 1.285 11 H -0.283 1.283 12 H -0.227 1.227 13 N -0.519 5.519 14 C 0.042 3.958 15 C -0.104 4.104 16 C -0.103 4.103 17 C 0.114 3.886 18 C -0.145 4.145 19 C 0.070 3.930 20 H 0.126 0.874 21 O -0.385 6.385 22 C 0.038 3.962 23 C 0.501 3.499 24 O -0.583 6.583 25 N -0.717 5.717 26 C 0.083 3.917 27 C 0.022 3.978 28 O -0.354 6.354 29 C 0.058 3.942 30 H 0.048 0.952 31 H 0.027 0.973 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.041 0.959 35 H 0.262 0.738 36 H 0.022 0.978 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.062 0.938 43 H 0.119 0.881 44 H 0.124 0.876 45 H 0.109 0.891 46 H 0.424 0.576 47 H 0.048 0.952 48 H 0.119 0.881 49 H 0.042 0.958 50 H 0.024 0.976 51 H 0.116 0.884 52 H 0.041 0.959 53 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.034 14.677 -21.207 26.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.153 4.153 3 C 0.085 3.915 4 H -0.004 1.004 5 C -0.529 4.529 6 H 0.047 0.953 7 C -0.180 4.180 8 N -0.584 5.584 9 Si 0.745 3.255 10 H -0.212 1.212 11 H -0.209 1.209 12 H -0.150 1.150 13 N -0.243 5.243 14 C -0.086 4.086 15 C -0.142 4.142 16 C -0.141 4.141 17 C 0.074 3.926 18 C -0.183 4.183 19 C 0.012 3.988 20 H 0.143 0.857 21 O -0.304 6.304 22 C -0.041 4.041 23 C 0.287 3.713 24 O -0.462 6.462 25 N -0.371 5.371 26 C -0.060 4.060 27 C -0.055 4.055 28 O -0.273 6.273 29 C -0.071 4.071 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.040 0.960 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.101 0.899 42 H 0.081 0.919 43 H 0.137 0.863 44 H 0.142 0.858 45 H 0.127 0.873 46 H 0.262 0.738 47 H 0.067 0.933 48 H 0.137 0.863 49 H 0.061 0.939 50 H 0.042 0.958 51 H 0.134 0.866 52 H 0.059 0.941 53 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -4.920 14.358 -20.328 25.369 hybrid contribution 1.304 -0.116 1.328 1.865 sum -3.615 14.242 -18.999 24.018 Atomic orbital electron populations 1.21332 0.95105 0.99191 1.01381 1.21892 0.97574 0.96316 0.99513 1.19478 0.90934 0.92039 0.89060 1.00435 1.20957 1.27903 1.13954 0.90095 0.95342 1.25667 0.98953 0.98157 0.95226 1.70123 1.41366 1.48126 0.98740 0.86296 0.80020 0.79677 0.79480 1.21179 1.20934 1.14983 1.61708 1.59597 1.01023 1.01950 1.22323 0.97222 0.98857 0.90162 1.21490 1.00589 0.95177 0.96942 1.21716 1.02096 0.95920 0.94328 1.21953 0.81629 0.93983 0.95028 1.23052 0.98025 0.92783 1.04414 1.23807 0.95115 0.86179 0.93719 0.85689 1.88087 1.59210 1.22791 1.60280 1.22569 0.96789 0.85117 0.99614 1.20996 0.81720 0.84357 0.84186 1.90762 1.32457 1.81651 1.41288 1.45561 1.38945 1.12737 1.39902 1.21679 1.01378 0.90370 0.92610 1.24010 1.01298 0.84518 0.95686 1.88931 1.22460 1.38945 1.76940 1.22321 0.95407 0.90804 0.98535 0.93293 0.95418 0.92359 0.91997 0.94066 0.92870 0.96010 0.90431 0.92000 0.88998 0.88685 0.89885 0.91930 0.86284 0.85844 0.87332 0.73848 0.93340 0.86258 0.93935 0.95766 0.86561 0.94078 0.95993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.84 9.42 71.98 0.68 -4.16 16 2 C -0.12 -5.06 4.41 30.60 0.13 -4.92 16 3 C 0.19 9.48 1.31 44.17 0.06 9.53 16 4 H -0.02 -1.10 6.90 -2.39 -0.02 -1.11 16 5 C -0.49 -29.33 7.07 25.60 0.18 -29.15 16 6 H 0.03 1.95 7.10 -2.91 -0.02 1.93 16 7 C 0.02 1.04 5.34 84.66 0.45 1.50 16 8 N -0.94 -61.67 13.96 21.45 0.30 -61.37 16 9 Si 0.92 45.93 25.74 68.60 1.77 47.70 16 10 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 11 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 12 H -0.23 -10.24 5.36 99.48 0.53 -9.70 16 13 N -0.52 -22.14 3.67 -875.87 -3.22 -25.36 16 14 C 0.04 1.39 4.86 86.33 0.42 1.81 16 15 C -0.10 -2.70 5.96 30.67 0.18 -2.51 16 16 C -0.10 -2.43 4.78 30.60 0.15 -2.28 16 17 C 0.11 3.55 0.74 -10.62 -0.01 3.54 16 18 C -0.14 -3.82 6.04 31.52 0.19 -3.63 16 19 C 0.07 1.65 3.63 31.92 0.12 1.77 16 20 H 0.13 1.79 7.83 -2.39 -0.02 1.77 16 21 O -0.38 -10.92 9.64 -129.94 -1.25 -12.17 16 22 C 0.04 0.65 6.25 71.23 0.45 1.10 16 23 C 0.50 11.72 7.91 87.66 0.69 12.41 16 24 O -0.58 -21.68 16.50 15.98 0.26 -21.42 16 25 N -0.72 -9.52 5.71 -484.50 -2.77 -12.29 16 26 C 0.08 1.07 10.70 127.77 1.37 2.44 16 27 C 0.02 0.68 7.39 72.67 0.54 1.22 16 28 O -0.35 -12.07 10.32 -148.98 -1.54 -13.61 16 29 C 0.06 2.42 3.94 86.23 0.34 2.76 16 30 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.03 1.39 7.18 -2.39 -0.02 1.38 16 32 H 0.06 2.39 7.22 -2.39 -0.02 2.37 16 33 H 0.06 2.32 6.37 -2.39 -0.02 2.30 16 34 H 0.04 1.89 4.65 -2.39 -0.01 1.88 16 35 H 0.26 16.13 8.31 -92.71 -0.77 15.35 16 36 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.08 2.50 5.66 -2.38 -0.01 2.49 16 38 H 0.06 1.81 7.87 -2.39 -0.02 1.79 16 39 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 41 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.06 2.03 7.62 -2.39 -0.02 2.01 16 43 H 0.12 2.21 7.69 -2.38 -0.02 2.19 16 44 H 0.12 1.02 8.12 -2.38 -0.02 1.00 16 45 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 46 H 0.42 1.71 8.83 -92.71 -0.82 0.89 16 47 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 49 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 50 H 0.02 0.97 8.12 -2.39 -0.02 0.95 16 51 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 52 H 0.04 2.11 6.37 -2.39 -0.02 2.10 16 53 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -89.18 400.25 -0.61 -89.79 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -0.09 Total: 17.31 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: 5.93 Total: -8.59 kcal Atomic # 7 Polarization: -93.33 SS G_CDS: -5.69 Total: -99.01 kcal Atomic # 8 Polarization: -44.67 SS G_CDS: -2.53 Total: -47.20 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.77 Total: 47.70 kcal Total: -89.18 -0.61 -89.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255168586.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.694 kcal (2) G-P(sol) polarization free energy of solvation -89.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds