Wall clock time and date at job start Sat Apr 11 2020 06:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46866 * 2 1 4 4 H 1.08998 * 109.47156 * 304.99731 * 3 2 1 5 5 C 1.50695 * 109.46716 * 185.00056 * 3 2 1 6 6 H 1.08000 * 119.99656 * 239.99824 * 5 3 2 7 7 C 1.37874 * 120.00330 * 59.72785 * 5 3 2 8 8 N 1.31513 * 120.00206 * 0.26814 * 7 5 3 9 9 Si 1.86806 * 120.00033 * 180.27310 * 7 5 3 10 10 H 1.48498 * 109.47046 * 89.99930 * 9 7 5 11 11 H 1.48500 * 109.47083 * 209.99409 * 9 7 5 12 12 H 1.48493 * 109.47071 * 329.99699 * 9 7 5 13 13 N 1.46897 * 109.46785 * 64.99827 * 3 2 1 14 14 C 1.48628 * 111.00043 * 62.52961 * 13 3 2 15 15 C 1.55180 * 103.39631 * 159.13190 * 14 13 3 16 16 H 1.08999 * 110.94788 * 81.85361 * 15 14 13 17 17 N 1.46504 * 110.78486 * 205.22354 * 15 14 13 18 18 C 1.34775 * 119.99676 * 213.30231 * 17 15 14 19 19 O 1.21510 * 120.00259 * 0.02562 * 18 17 15 20 20 O 1.34633 * 119.99650 * 179.97438 * 18 17 15 21 21 C 1.45200 * 117.00032 * 180.02562 * 20 18 17 22 22 C 1.52992 * 109.47176 * 60.00658 * 21 20 18 23 23 C 1.53009 * 109.47108 * 180.02562 * 21 20 18 24 24 C 1.53005 * 109.47045 * 300.00232 * 21 20 18 25 25 C 1.53560 * 102.60536 * 323.50339 * 15 14 13 26 26 C 1.52902 * 115.62507 * 151.60023 * 25 15 14 27 27 O 1.44400 * 85.15033 * 95.02888 * 26 25 15 28 28 C 1.44398 * 93.54144 * 23.37652 * 27 26 25 29 29 C 1.48220 * 110.99482 * 179.97438 * 13 3 2 30 30 H 1.09002 * 109.47219 * 60.00178 * 1 2 3 31 31 H 1.09005 * 109.46939 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47061 * 300.00126 * 1 2 3 33 33 H 1.08997 * 109.47061 * 239.99874 * 2 1 3 34 34 H 1.09002 * 109.47219 * 119.99822 * 2 1 3 35 35 H 0.96993 * 120.00372 * 179.97438 * 8 7 5 36 36 H 1.09004 * 110.63381 * 277.60606 * 14 13 3 37 37 H 1.09002 * 110.64100 * 40.65125 * 14 13 3 38 38 H 0.96989 * 119.99745 * 33.30325 * 17 15 14 39 39 H 1.08993 * 109.47507 * 59.99578 * 22 21 20 40 40 H 1.09000 * 109.47208 * 180.02562 * 22 21 20 41 41 H 1.09002 * 109.47086 * 299.99595 * 22 21 20 42 42 H 1.08994 * 109.46914 * 59.99970 * 23 21 20 43 43 H 1.08999 * 109.47120 * 180.02562 * 23 21 20 44 44 H 1.09003 * 109.46678 * 299.99688 * 23 21 20 45 45 H 1.08997 * 109.46727 * 60.00552 * 24 21 20 46 46 H 1.08999 * 109.46780 * 179.97438 * 24 21 20 47 47 H 1.08992 * 109.47269 * 299.99732 * 24 21 20 48 48 H 1.09008 * 113.92169 * 209.07842 * 26 25 15 49 49 H 1.09001 * 113.92310 * 340.96743 * 26 25 15 50 50 H 1.09002 * 113.92740 * 222.56849 * 28 27 26 51 51 H 1.09001 * 114.05038 * 90.68853 * 28 27 26 52 52 H 1.09002 * 110.03342 * 333.62337 * 29 13 3 53 53 H 1.09003 * 110.02876 * 95.00523 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1471 1.8889 0.6523 7 6 4.1435 0.8735 -1.2252 8 7 3.4065 0.3320 -2.1704 9 14 6.0055 0.8689 -1.3750 10 1 6.5494 -0.3630 -0.7492 11 1 6.3868 0.9049 -2.8098 12 1 6.5604 2.0611 -0.6852 13 7 1.6513 2.0993 1.2552 14 6 2.2761 1.4266 2.4240 15 6 2.2251 2.5111 3.5327 16 1 1.2445 2.5367 4.0080 17 7 3.2770 2.2875 4.5276 18 6 3.0605 2.6035 5.8198 19 8 1.9927 3.0734 6.1597 20 8 4.0270 2.3975 6.7341 21 6 3.7239 2.7606 8.1069 22 6 2.5189 1.9534 8.5938 23 6 4.9334 2.4572 8.9936 24 6 3.4005 4.2543 8.1799 25 6 2.4838 3.8053 2.7477 26 6 1.8640 5.0721 3.3383 27 8 3.1524 5.2647 3.9613 28 6 3.8456 4.4598 2.9832 29 6 2.1299 3.5016 1.2913 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.8297 -0.0693 -2.9454 36 1 1.6981 0.5501 2.7171 37 1 3.3074 1.1515 2.2029 38 1 4.1291 1.9121 4.2563 39 1 2.7492 0.8894 8.5418 40 1 2.2911 2.2263 9.6242 41 1 1.6573 2.1699 7.9621 42 1 5.7917 3.0325 8.6467 43 1 4.7057 2.7293 10.0243 44 1 5.1641 1.3931 8.9417 45 1 2.5390 4.4707 7.5482 46 1 3.1726 4.5267 9.2103 47 1 4.2590 4.8293 7.8331 48 1 1.6145 5.8299 2.5955 49 1 1.0557 4.8810 4.0442 50 1 4.5906 3.7887 3.4107 51 1 4.2189 5.0234 2.1281 52 1 3.0129 3.6111 0.6616 53 1 1.3425 4.1737 0.9500 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255177521.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:35 Heat of formation + Delta-G solvation = -81.584977 kcal Electronic energy + Delta-G solvation = -32758.640032 eV Core-core repulsion = 28632.139983 eV Total energy + Delta-G solvation = -4126.500049 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.21984 -40.27155 -37.67903 -37.02027 -34.72655 -34.03777 -32.97611 -31.59651 -29.52876 -28.29822 -27.51395 -27.42441 -26.44363 -26.30863 -24.03352 -23.20172 -22.09907 -21.33112 -20.06300 -19.18095 -18.64463 -18.01321 -16.73350 -16.63969 -16.08591 -15.90470 -15.61644 -15.40605 -14.94933 -14.78041 -14.43108 -14.29050 -14.06258 -13.63109 -13.20779 -12.96817 -12.66736 -12.61836 -12.55871 -12.38687 -12.30297 -12.08495 -11.96804 -11.92760 -11.71964 -11.47262 -11.33902 -11.28851 -11.19129 -11.08069 -10.79715 -10.69393 -10.36502 -10.34590 -10.20209 -10.03802 -9.89238 -9.74546 -9.53939 -9.43188 -9.15569 -8.89633 -8.46237 -7.37657 -6.10091 -4.23859 2.27868 3.04129 3.18654 3.27175 3.28233 3.92341 4.17256 4.29473 4.51434 4.64320 4.67976 4.77016 4.82938 5.05689 5.15260 5.19738 5.34415 5.40353 5.43584 5.49511 5.51570 5.57756 5.65950 5.75849 5.78207 5.79798 5.81338 5.87400 6.01676 6.17850 6.24452 6.28050 6.28275 6.36110 6.38255 6.38861 6.42138 6.48369 6.61483 6.61930 6.63942 6.70015 6.97192 7.10533 7.18473 7.47552 7.59583 7.63328 7.80708 8.00896 8.07035 8.30744 8.56748 8.84758 9.43693 10.89565 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013599 B = 0.003447 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.410514 B = 8120.865636 C = 8393.894970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 C 0.206 3.794 4 H 0.042 0.958 5 C -0.547 4.547 6 H 0.057 0.943 7 C 0.071 3.929 8 N -0.881 5.881 9 Si 0.885 3.115 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.508 5.508 14 C 0.037 3.963 15 C 0.179 3.821 16 H 0.109 0.891 17 N -0.698 5.698 18 C 0.658 3.342 19 O -0.567 6.567 20 O -0.368 6.368 21 C 0.138 3.862 22 C -0.183 4.183 23 C -0.140 4.140 24 C -0.181 4.181 25 C -0.147 4.147 26 C 0.054 3.946 27 O -0.380 6.380 28 C 0.052 3.948 29 C 0.045 3.955 30 H 0.040 0.960 31 H 0.025 0.975 32 H 0.047 0.953 33 H 0.093 0.907 34 H 0.031 0.969 35 H 0.262 0.738 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.404 0.596 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.090 0.910 46 H 0.065 0.935 47 H 0.059 0.941 48 H 0.078 0.922 49 H 0.091 0.909 50 H 0.084 0.916 51 H 0.081 0.919 52 H 0.072 0.928 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.088 4.456 16.059 16.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 C 0.099 3.901 4 H 0.060 0.940 5 C -0.586 4.586 6 H 0.075 0.925 7 C -0.132 4.132 8 N -0.519 5.519 9 Si 0.713 3.287 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.232 5.232 14 C -0.092 4.092 15 C 0.075 3.925 16 H 0.127 0.873 17 N -0.355 5.355 18 C 0.412 3.588 19 O -0.456 6.456 20 O -0.283 6.283 21 C 0.101 3.899 22 C -0.240 4.240 23 C -0.198 4.198 24 C -0.238 4.238 25 C -0.149 4.149 26 C -0.023 4.023 27 O -0.298 6.298 28 C -0.026 4.026 29 C -0.083 4.083 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.239 0.761 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.084 0.916 45 H 0.109 0.891 46 H 0.084 0.916 47 H 0.078 0.922 48 H 0.096 0.904 49 H 0.109 0.891 50 H 0.102 0.898 51 H 0.099 0.901 52 H 0.090 0.910 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.912 4.706 16.368 17.056 hybrid contribution 2.359 -0.283 -0.586 2.447 sum 1.447 4.422 15.783 16.454 Atomic orbital electron populations 1.21723 0.98754 0.98543 1.00669 1.21586 0.92342 0.98955 1.02046 1.19441 0.93235 0.91398 0.86033 0.93987 1.21646 0.92564 1.38567 1.05799 0.92454 1.24892 0.97771 0.94885 0.95633 1.69861 1.34878 1.37687 1.09452 0.86708 0.86142 0.78421 0.77419 1.20657 1.21163 1.19998 1.65274 1.53107 1.00776 1.04064 1.23393 1.00522 0.95557 0.89704 1.21637 0.90691 0.93305 0.86901 0.87287 1.44720 1.19347 1.67106 1.04363 1.17953 0.82120 0.76926 0.81836 1.90850 1.25961 1.48938 1.79851 1.86284 1.43096 1.79951 1.18965 1.21991 0.95887 0.95292 0.76745 1.22511 0.99313 0.99800 1.02379 1.21855 0.96752 1.02866 0.98295 1.22488 1.04126 0.94071 1.03150 1.24166 0.96263 0.96434 0.98077 1.23858 0.88146 0.94422 0.95872 1.89689 1.19891 1.74189 1.46051 1.23780 0.95159 0.92010 0.91619 1.22690 1.00349 0.92508 0.92790 0.94133 0.95544 0.93345 0.88892 0.95015 0.92756 0.90490 0.91394 0.76058 0.92302 0.91424 0.89240 0.91549 0.90359 0.91583 0.89098 0.91606 0.92238 0.90385 0.89113 0.89762 0.90133 0.90997 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.80 37.16 0.36 -2.33 16 2 C -0.11 -2.45 5.14 -26.73 -0.14 -2.59 16 3 C 0.21 4.62 1.82 -68.87 -0.13 4.50 16 4 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 5 C -0.55 -13.20 6.34 -34.44 -0.22 -13.42 16 6 H 0.06 1.36 6.05 -52.49 -0.32 1.05 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -23.37 11.28 55.43 0.63 -22.75 16 9 Si 0.89 19.81 29.54 -169.99 -5.02 14.78 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 13 N -0.51 -9.64 4.77 -224.05 -1.07 -10.71 16 14 C 0.04 0.64 4.95 -1.71 -0.01 0.63 16 15 C 0.18 2.76 3.20 -66.48 -0.21 2.55 16 16 H 0.11 1.80 7.21 -51.93 -0.37 1.42 16 17 N -0.70 -10.03 3.63 -57.31 -0.21 -10.23 16 18 C 0.66 10.04 8.06 54.05 0.44 10.48 16 19 O -0.57 -9.54 11.40 -19.28 -0.22 -9.76 16 20 O -0.37 -5.13 9.94 -40.30 -0.40 -5.53 16 21 C 0.14 1.59 1.13 -90.62 -0.10 1.48 16 22 C -0.18 -2.01 8.37 37.15 0.31 -1.70 16 23 C -0.14 -1.22 8.85 37.16 0.33 -0.89 16 24 C -0.18 -2.11 8.37 37.16 0.31 -1.80 16 25 C -0.15 -2.25 1.17 -154.35 -0.18 -2.43 16 26 C 0.05 0.79 8.42 37.08 0.31 1.10 16 27 O -0.38 -6.19 12.44 -35.23 -0.44 -6.63 16 28 C 0.05 0.77 7.98 37.09 0.30 1.07 16 29 C 0.05 0.78 5.89 -3.13 -0.02 0.77 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.90 7.75 -51.93 -0.40 0.49 16 33 H 0.09 2.33 5.94 -51.93 -0.31 2.02 16 34 H 0.03 0.68 6.77 -51.93 -0.35 0.33 16 35 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 36 H 0.08 1.33 7.58 -51.93 -0.39 0.94 16 37 H 0.07 1.27 5.97 -51.93 -0.31 0.96 16 38 H 0.40 5.32 8.29 -40.82 -0.34 4.98 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.09 1.20 5.88 -51.93 -0.31 0.89 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.09 1.30 5.88 -51.93 -0.31 1.00 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.08 1.01 8.10 -51.92 -0.42 0.59 16 49 H 0.09 1.34 8.04 -51.93 -0.42 0.92 16 50 H 0.08 1.23 6.67 -51.93 -0.35 0.88 16 51 H 0.08 1.16 8.12 -51.93 -0.42 0.74 16 52 H 0.07 1.39 6.10 -51.93 -0.32 1.08 16 53 H 0.07 1.14 7.91 -51.93 -0.41 0.73 16 LS Contribution 401.10 15.07 6.04 6.04 Total: -1.00 -27.11 401.10 -8.53 -35.64 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -9.10 Total: 10.01 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 1.26 Total: -0.87 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: -0.65 Total: -43.69 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -1.06 Total: -21.92 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -27.11 -8.53 -35.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177521.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.943 kcal (2) G-P(sol) polarization free energy of solvation -27.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds