Wall clock time and date at job start Sat Apr 11 2020 06:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46767 * 2 1 4 4 H 1.09004 * 109.46887 * 303.44997 * 3 2 1 5 5 C 1.50704 * 109.46897 * 183.45436 * 3 2 1 6 6 H 1.08006 * 119.99440 * 240.00136 * 5 3 2 7 7 C 1.37875 * 120.00402 * 59.99671 * 5 3 2 8 8 N 1.31517 * 119.99707 * 0.02562 * 7 5 3 9 9 Si 1.86790 * 120.00117 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47194 * 89.99959 * 9 7 5 11 11 H 1.48500 * 109.47118 * 210.00191 * 9 7 5 12 12 H 1.48501 * 109.47263 * 330.00455 * 9 7 5 13 13 N 1.46897 * 109.47139 * 63.44850 * 3 2 1 14 14 C 1.48017 * 110.99666 * 181.97553 * 13 3 2 15 15 C 1.54323 * 107.04794 * 214.38627 * 14 13 3 16 16 H 1.08999 * 110.38791 * 243.31290 * 15 14 13 17 17 N 1.46498 * 110.38530 * 120.93200 * 15 14 13 18 18 C 1.34778 * 120.00043 * 86.45421 * 17 15 14 19 19 O 1.21513 * 119.99864 * 0.02562 * 18 17 15 20 20 O 1.34634 * 120.00274 * 179.97438 * 18 17 15 21 21 C 1.45193 * 117.00459 * 180.02562 * 20 18 17 22 22 C 1.53005 * 109.47163 * 59.99891 * 21 20 18 23 23 C 1.52995 * 109.47692 * 180.02562 * 21 20 18 24 24 C 1.52998 * 109.47199 * 300.00375 * 21 20 18 25 25 C 1.53233 * 104.71875 * 2.12315 * 15 14 13 26 26 C 1.52593 * 116.37179 * 250.95972 * 25 15 14 27 27 O 1.44470 * 85.02576 * 219.92652 * 26 25 15 28 28 C 1.44467 * 93.60618 * 23.15359 * 27 26 25 29 29 C 1.48798 * 110.99575 * 64.29138 * 13 3 2 30 30 H 1.08992 * 109.47867 * 54.76475 * 1 2 3 31 31 H 1.09001 * 109.47036 * 174.76864 * 1 2 3 32 32 H 1.08999 * 109.46940 * 294.75892 * 1 2 3 33 33 H 1.08995 * 109.46867 * 240.00169 * 2 1 3 34 34 H 1.08996 * 109.47423 * 120.00371 * 2 1 3 35 35 H 0.97000 * 119.99823 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.92191 * 333.73535 * 14 13 3 37 37 H 1.08996 * 109.91647 * 94.83952 * 14 13 3 38 38 H 0.96996 * 120.00389 * 266.44940 * 17 15 14 39 39 H 1.08998 * 109.46909 * 60.00086 * 22 21 20 40 40 H 1.09005 * 109.47335 * 180.02562 * 22 21 20 41 41 H 1.09004 * 109.47392 * 300.00312 * 22 21 20 42 42 H 1.08998 * 109.46776 * 59.99905 * 23 21 20 43 43 H 1.09000 * 109.47701 * 180.02562 * 23 21 20 44 44 H 1.08999 * 109.47117 * 299.99725 * 23 21 20 45 45 H 1.08998 * 109.47406 * 59.99573 * 24 21 20 46 46 H 1.09005 * 109.47402 * 179.97438 * 24 21 20 47 47 H 1.08998 * 109.46977 * 299.99917 * 24 21 20 48 48 H 1.08997 * 113.94420 * 333.94607 * 26 25 15 49 49 H 1.09003 * 113.93940 * 105.90959 * 26 25 15 50 50 H 1.08994 * 113.94501 * 222.82403 * 28 27 26 51 51 H 1.09007 * 113.94391 * 90.86300 * 28 27 26 52 52 H 1.09010 * 110.69411 * 276.67022 * 29 13 3 53 53 H 1.08997 * 110.70288 * 39.87381 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6269 1.9739 -0.8575 5 6 3.5445 1.4434 -0.0856 6 1 4.1299 1.8951 0.7017 7 6 4.1738 0.8677 -1.1689 8 7 3.4609 0.3181 -2.1278 9 14 6.0387 0.8682 -1.2746 10 1 6.5715 -0.3581 -0.6283 11 1 6.4537 0.8967 -2.7001 12 1 6.5736 2.0663 -0.5792 13 7 1.6194 2.1105 1.2389 14 6 2.0554 3.5250 1.2531 15 6 2.3931 3.8796 2.7165 16 1 1.7236 4.6579 3.0828 17 7 3.7887 4.3111 2.8280 18 6 4.1139 5.6019 2.6164 19 8 3.2495 6.4077 2.3335 20 8 5.3964 5.9986 2.7193 21 6 5.6732 7.4034 2.4786 22 6 4.8972 8.2559 3.4846 23 6 7.1725 7.6626 2.6390 24 6 5.2417 7.7720 1.0578 25 6 2.1733 2.5773 3.4934 26 6 0.9612 2.5367 4.4195 27 8 1.8366 1.8331 5.3281 28 6 3.0375 2.3739 4.7345 29 6 2.2485 1.4741 2.4277 30 1 -0.3634 0.5928 -0.8393 31 1 -0.3633 -1.0234 -0.0937 32 1 -0.3633 0.4304 0.9332 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.9036 -0.0866 -2.8901 36 1 2.9398 3.6473 0.6278 37 1 1.2518 4.1649 0.8888 38 1 4.4786 3.6680 3.0543 39 1 5.2046 7.9932 4.4968 40 1 5.1047 9.3106 3.3035 41 1 3.8291 8.0712 3.3698 42 1 7.7249 7.0553 1.9221 43 1 7.3803 8.7173 2.4587 44 1 7.4803 7.4000 3.6511 45 1 4.1736 7.5873 0.9429 46 1 5.4491 8.8268 0.8771 47 1 5.7945 7.1648 0.3410 48 1 0.6459 3.5164 4.7786 49 1 0.1365 1.9319 4.0423 50 1 3.8345 1.6421 4.6035 51 1 3.3783 3.3022 5.1931 52 1 1.6813 0.5972 2.7405 53 1 3.2852 1.2094 2.2198 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255177522.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:39 Heat of formation + Delta-G solvation = -83.783053 kcal Electronic energy + Delta-G solvation = -32776.690731 eV Core-core repulsion = 28650.095366 eV Total energy + Delta-G solvation = -4126.595364 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.22405 -40.40522 -37.85850 -36.92739 -34.83257 -34.05768 -32.79785 -31.47334 -29.85118 -27.95094 -27.49986 -27.41159 -26.59036 -26.39487 -24.42525 -23.30175 -22.18812 -20.77722 -20.02466 -19.24884 -18.83096 -18.10914 -16.71724 -16.55659 -16.09916 -16.01119 -15.72653 -15.50600 -14.88273 -14.79161 -14.41556 -14.31181 -13.87139 -13.70090 -13.47575 -13.25366 -12.94560 -12.59040 -12.44538 -12.32546 -12.19254 -11.96871 -11.93439 -11.91559 -11.57350 -11.46343 -11.34397 -11.16804 -11.10051 -11.02051 -10.86593 -10.64132 -10.59371 -10.37194 -10.30979 -10.07847 -9.93714 -9.76977 -9.58055 -9.50336 -9.13217 -8.90991 -8.42907 -7.32042 -6.06577 -4.19470 2.25450 3.00087 3.20719 3.28988 3.30629 3.73890 4.07985 4.32716 4.53500 4.59295 4.65373 4.69480 4.84033 5.09819 5.12447 5.17342 5.30582 5.34197 5.35965 5.45131 5.48719 5.58222 5.61328 5.68943 5.72822 5.76613 5.80965 5.89272 6.01939 6.11900 6.16201 6.18899 6.24918 6.29915 6.37216 6.41659 6.48945 6.54851 6.57702 6.60902 6.64578 6.80389 7.00388 7.12748 7.23046 7.51062 7.57146 7.67009 7.84555 8.05343 8.11482 8.34314 8.53617 8.88754 9.47582 10.93329 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009010 B = 0.004746 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3106.857195 B = 5898.236189 C = 7817.627558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 C 0.206 3.794 4 H 0.040 0.960 5 C -0.543 4.543 6 H 0.057 0.943 7 C 0.071 3.929 8 N -0.882 5.882 9 Si 0.884 3.116 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.510 5.510 14 C 0.028 3.972 15 C 0.162 3.838 16 H 0.095 0.905 17 N -0.697 5.697 18 C 0.653 3.347 19 O -0.569 6.569 20 O -0.366 6.366 21 C 0.137 3.863 22 C -0.182 4.182 23 C -0.141 4.141 24 C -0.184 4.184 25 C -0.139 4.139 26 C 0.062 3.938 27 O -0.380 6.380 28 C 0.046 3.954 29 C 0.065 3.935 30 H 0.040 0.960 31 H 0.025 0.975 32 H 0.045 0.955 33 H 0.092 0.908 34 H 0.031 0.969 35 H 0.262 0.738 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.404 0.596 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.090 0.910 46 H 0.067 0.933 47 H 0.061 0.939 48 H 0.078 0.922 49 H 0.100 0.900 50 H 0.093 0.907 51 H 0.079 0.921 52 H 0.077 0.923 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.221 10.476 11.191 15.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.148 4.148 3 C 0.099 3.901 4 H 0.058 0.942 5 C -0.582 4.582 6 H 0.075 0.925 7 C -0.132 4.132 8 N -0.520 5.520 9 Si 0.712 3.288 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.234 5.234 14 C -0.102 4.102 15 C 0.058 3.942 16 H 0.113 0.887 17 N -0.356 5.356 18 C 0.406 3.594 19 O -0.458 6.458 20 O -0.281 6.281 21 C 0.100 3.900 22 C -0.239 4.239 23 C -0.198 4.198 24 C -0.242 4.242 25 C -0.141 4.141 26 C -0.015 4.015 27 O -0.299 6.299 28 C -0.031 4.031 29 C -0.063 4.063 30 H 0.059 0.941 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.110 0.890 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.239 0.761 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.108 0.892 46 H 0.086 0.914 47 H 0.080 0.920 48 H 0.096 0.904 49 H 0.118 0.882 50 H 0.111 0.889 51 H 0.097 0.903 52 H 0.095 0.905 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.230 10.630 11.061 15.390 hybrid contribution 2.416 -0.084 -0.442 2.458 sum 3.646 10.547 10.619 15.404 Atomic orbital electron populations 1.21699 0.98767 0.98441 1.00552 1.21560 0.92267 0.98903 1.02031 1.19433 0.92970 0.91241 0.86462 0.94203 1.21634 0.92481 1.37973 1.06147 0.92524 1.24887 0.97792 0.94983 0.95569 1.69869 1.34936 1.37550 1.09606 0.86722 0.86310 0.78380 0.77381 1.20647 1.21189 1.20026 1.65279 1.53520 1.00569 1.04047 1.23276 1.00852 0.92034 0.93998 1.21676 0.79890 0.95425 0.97205 0.88696 1.44790 1.10402 1.06641 1.73721 1.18024 0.81324 0.83553 0.76454 1.90877 1.49382 1.52296 1.53279 1.86302 1.27256 1.30366 1.84212 1.22010 0.95755 0.76223 0.95999 1.22512 1.03459 0.99612 0.98333 1.21856 0.92514 1.02266 1.03166 1.22519 1.05037 1.01792 0.94816 1.24056 0.96740 0.97270 0.96013 1.23722 0.94137 0.97095 0.86575 1.89724 1.17096 1.65496 1.57603 1.23740 0.90255 0.98782 0.90324 1.22776 1.00456 0.94538 0.88540 0.94132 0.95575 0.93569 0.88985 0.94973 0.92820 0.91150 0.91090 0.76128 0.92377 0.91354 0.89276 0.91415 0.90303 0.91619 0.89158 0.91397 0.92021 0.90373 0.88163 0.88883 0.90258 0.90504 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.72 37.16 0.36 -2.32 16 2 C -0.11 -2.46 5.14 -26.73 -0.14 -2.60 16 3 C 0.21 4.76 1.79 -68.86 -0.12 4.64 16 4 H 0.04 1.06 8.14 -51.93 -0.42 0.63 16 5 C -0.54 -13.54 6.35 -34.44 -0.22 -13.76 16 6 H 0.06 1.40 6.07 -52.48 -0.32 1.08 16 7 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 8 N -0.88 -23.96 11.30 55.43 0.63 -23.34 16 9 Si 0.88 20.42 29.54 -169.99 -5.02 15.40 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.51 -9.88 4.77 -224.22 -1.07 -10.95 16 14 C 0.03 0.52 6.17 -2.52 -0.02 0.50 16 15 C 0.16 2.46 2.97 -67.12 -0.20 2.26 16 16 H 0.10 1.43 7.39 -51.93 -0.38 1.04 16 17 N -0.70 -10.30 4.48 -57.93 -0.26 -10.55 16 18 C 0.65 10.31 8.05 54.06 0.44 10.75 16 19 O -0.57 -9.83 11.59 -19.28 -0.22 -10.06 16 20 O -0.37 -5.35 9.94 -40.31 -0.40 -5.75 16 21 C 0.14 1.65 1.13 -90.62 -0.10 1.55 16 22 C -0.18 -2.01 8.37 37.16 0.31 -1.70 16 23 C -0.14 -1.31 8.85 37.15 0.33 -0.98 16 24 C -0.18 -2.31 8.37 37.16 0.31 -2.00 16 25 C -0.14 -1.98 0.96 -154.51 -0.15 -2.13 16 26 C 0.06 0.81 8.48 36.93 0.31 1.12 16 27 O -0.38 -5.56 12.46 -35.23 -0.44 -5.99 16 28 C 0.05 0.59 7.41 36.93 0.27 0.87 16 29 C 0.06 1.13 4.67 -2.47 -0.01 1.12 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.85 7.86 -51.93 -0.41 0.45 16 33 H 0.09 2.35 5.99 -51.93 -0.31 2.04 16 34 H 0.03 0.71 6.93 -51.93 -0.36 0.35 16 35 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 36 H 0.07 1.52 6.23 -51.93 -0.32 1.19 16 37 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.40 5.54 7.99 -40.82 -0.33 5.21 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 1.19 5.88 -51.93 -0.31 0.88 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.09 1.35 5.88 -51.93 -0.31 1.05 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.08 0.90 8.00 -51.93 -0.42 0.48 16 49 H 0.10 1.30 8.12 -51.93 -0.42 0.88 16 50 H 0.09 1.12 8.12 -51.93 -0.42 0.70 16 51 H 0.08 0.91 7.94 -51.93 -0.41 0.50 16 52 H 0.08 1.36 7.61 -51.92 -0.40 0.97 16 53 H 0.07 1.36 5.94 -51.93 -0.31 1.05 16 LS Contribution 402.94 15.07 6.07 6.07 Total: -1.00 -27.88 402.94 -8.63 -36.52 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -9.20 Total: 9.58 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: 1.28 Total: -0.94 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -0.70 Total: -44.84 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -1.06 Total: -21.80 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -27.88 -8.63 -36.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177522.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.267 kcal (2) G-P(sol) polarization free energy of solvation -27.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds