Wall clock time and date at job start Sat Apr 11 2020 06:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46767 * 2 1 4 4 H 1.09004 * 109.46887 * 303.44997 * 3 2 1 5 5 C 1.50704 * 109.46897 * 183.45436 * 3 2 1 6 6 H 1.08006 * 119.99440 * 240.00136 * 5 3 2 7 7 C 1.37875 * 120.00402 * 59.99671 * 5 3 2 8 8 N 1.31517 * 119.99707 * 0.02562 * 7 5 3 9 9 Si 1.86790 * 120.00117 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47194 * 89.99959 * 9 7 5 11 11 H 1.48500 * 109.47118 * 210.00191 * 9 7 5 12 12 H 1.48501 * 109.47263 * 330.00455 * 9 7 5 13 13 N 1.46897 * 109.47139 * 63.44850 * 3 2 1 14 14 C 1.48017 * 110.99666 * 181.97553 * 13 3 2 15 15 C 1.54323 * 107.04794 * 214.38627 * 14 13 3 16 16 H 1.08999 * 110.38791 * 243.31290 * 15 14 13 17 17 N 1.46498 * 110.38530 * 120.93200 * 15 14 13 18 18 C 1.34778 * 120.00043 * 86.45421 * 17 15 14 19 19 O 1.21513 * 119.99864 * 0.02562 * 18 17 15 20 20 O 1.34634 * 120.00274 * 179.97438 * 18 17 15 21 21 C 1.45193 * 117.00459 * 180.02562 * 20 18 17 22 22 C 1.53005 * 109.47163 * 59.99891 * 21 20 18 23 23 C 1.52995 * 109.47692 * 180.02562 * 21 20 18 24 24 C 1.52998 * 109.47199 * 300.00375 * 21 20 18 25 25 C 1.53233 * 104.71875 * 2.12315 * 15 14 13 26 26 C 1.52593 * 116.37179 * 250.95972 * 25 15 14 27 27 O 1.44470 * 85.02576 * 219.92652 * 26 25 15 28 28 C 1.44467 * 93.60618 * 23.15359 * 27 26 25 29 29 C 1.48798 * 110.99575 * 64.29138 * 13 3 2 30 30 H 1.08992 * 109.47867 * 54.76475 * 1 2 3 31 31 H 1.09001 * 109.47036 * 174.76864 * 1 2 3 32 32 H 1.08999 * 109.46940 * 294.75892 * 1 2 3 33 33 H 1.08995 * 109.46867 * 240.00169 * 2 1 3 34 34 H 1.08996 * 109.47423 * 120.00371 * 2 1 3 35 35 H 0.97000 * 119.99823 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.92191 * 333.73535 * 14 13 3 37 37 H 1.08996 * 109.91647 * 94.83952 * 14 13 3 38 38 H 0.96996 * 120.00389 * 266.44940 * 17 15 14 39 39 H 1.08998 * 109.46909 * 60.00086 * 22 21 20 40 40 H 1.09005 * 109.47335 * 180.02562 * 22 21 20 41 41 H 1.09004 * 109.47392 * 300.00312 * 22 21 20 42 42 H 1.08998 * 109.46776 * 59.99905 * 23 21 20 43 43 H 1.09000 * 109.47701 * 180.02562 * 23 21 20 44 44 H 1.08999 * 109.47117 * 299.99725 * 23 21 20 45 45 H 1.08998 * 109.47406 * 59.99573 * 24 21 20 46 46 H 1.09005 * 109.47402 * 179.97438 * 24 21 20 47 47 H 1.08998 * 109.46977 * 299.99917 * 24 21 20 48 48 H 1.08997 * 113.94420 * 333.94607 * 26 25 15 49 49 H 1.09003 * 113.93940 * 105.90959 * 26 25 15 50 50 H 1.08994 * 113.94501 * 222.82403 * 28 27 26 51 51 H 1.09007 * 113.94391 * 90.86300 * 28 27 26 52 52 H 1.09010 * 110.69411 * 276.67022 * 29 13 3 53 53 H 1.08997 * 110.70288 * 39.87381 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6269 1.9739 -0.8575 5 6 3.5445 1.4434 -0.0856 6 1 4.1299 1.8951 0.7017 7 6 4.1738 0.8677 -1.1689 8 7 3.4609 0.3181 -2.1278 9 14 6.0387 0.8682 -1.2746 10 1 6.5715 -0.3581 -0.6283 11 1 6.4537 0.8967 -2.7001 12 1 6.5736 2.0663 -0.5792 13 7 1.6194 2.1105 1.2389 14 6 2.0554 3.5250 1.2531 15 6 2.3931 3.8796 2.7165 16 1 1.7236 4.6579 3.0828 17 7 3.7887 4.3111 2.8280 18 6 4.1139 5.6019 2.6164 19 8 3.2495 6.4077 2.3335 20 8 5.3964 5.9986 2.7193 21 6 5.6732 7.4034 2.4786 22 6 4.8972 8.2559 3.4846 23 6 7.1725 7.6626 2.6390 24 6 5.2417 7.7720 1.0578 25 6 2.1733 2.5773 3.4934 26 6 0.9612 2.5367 4.4195 27 8 1.8366 1.8331 5.3281 28 6 3.0375 2.3739 4.7345 29 6 2.2485 1.4741 2.4277 30 1 -0.3634 0.5928 -0.8393 31 1 -0.3633 -1.0234 -0.0937 32 1 -0.3633 0.4304 0.9332 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.9036 -0.0866 -2.8901 36 1 2.9398 3.6473 0.6278 37 1 1.2518 4.1649 0.8888 38 1 4.4786 3.6680 3.0543 39 1 5.2046 7.9932 4.4968 40 1 5.1047 9.3106 3.3035 41 1 3.8291 8.0712 3.3698 42 1 7.7249 7.0553 1.9221 43 1 7.3803 8.7173 2.4587 44 1 7.4803 7.4000 3.6511 45 1 4.1736 7.5873 0.9429 46 1 5.4491 8.8268 0.8771 47 1 5.7945 7.1648 0.3410 48 1 0.6459 3.5164 4.7786 49 1 0.1365 1.9319 4.0423 50 1 3.8345 1.6421 4.6035 51 1 3.3783 3.3022 5.1931 52 1 1.6813 0.5972 2.7405 53 1 3.2852 1.2094 2.2198 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255177522.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:38 Heat of formation + Delta-G solvation = -102.419071 kcal Electronic energy + Delta-G solvation = -32777.498849 eV Core-core repulsion = 28650.095366 eV Total energy + Delta-G solvation = -4127.403483 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.43249 -41.54072 -39.21099 -38.22369 -36.27029 -35.20276 -34.35519 -33.22576 -31.23431 -29.40399 -28.35346 -28.29075 -28.22530 -27.55470 -25.89967 -24.83953 -23.57582 -22.15529 -21.18580 -20.99784 -20.04871 -19.30004 -18.39669 -17.87158 -17.35030 -17.18494 -16.83894 -16.67248 -16.61068 -15.99437 -15.57557 -15.48057 -15.41245 -15.11619 -14.84032 -14.59151 -14.36947 -13.95604 -13.76568 -13.35281 -13.34045 -13.21565 -13.16122 -12.90805 -12.89304 -12.85353 -12.75552 -12.62665 -12.57198 -12.40019 -12.32827 -12.22447 -11.99678 -11.78803 -11.62100 -11.50969 -11.39015 -11.35716 -11.09524 -10.98366 -10.60593 -10.42879 -10.20810 -9.03616 -8.04962 -6.24821 1.13133 1.34650 1.37785 1.44430 1.77124 2.38143 2.66158 2.95285 3.15442 3.36669 3.39040 3.64263 3.76326 3.78519 3.82120 3.95711 4.09256 4.26840 4.40394 4.49698 4.53830 4.58458 4.62509 4.67818 4.69448 4.73953 4.76859 4.83359 4.86151 4.88289 4.90404 4.93437 5.00399 5.02058 5.06712 5.11636 5.13275 5.18083 5.22947 5.29112 5.30428 5.39122 5.44236 5.46797 5.57139 5.61524 5.78066 6.01910 6.14206 6.31570 6.37245 6.47431 6.93823 7.33475 7.44669 8.91623 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009010 B = 0.004746 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3106.857195 B = 5898.236189 C = 7817.627558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.103 4.103 3 C 0.213 3.787 4 H -0.001 1.001 5 C -0.542 4.542 6 H 0.057 0.943 7 C 0.023 3.977 8 N -0.910 5.910 9 Si 0.940 3.060 10 H -0.274 1.274 11 H -0.289 1.289 12 H -0.273 1.273 13 N -0.505 5.505 14 C 0.030 3.970 15 C 0.176 3.824 16 H 0.104 0.896 17 N -0.694 5.694 18 C 0.650 3.350 19 O -0.587 6.587 20 O -0.372 6.372 21 C 0.124 3.876 22 C -0.176 4.176 23 C -0.136 4.136 24 C -0.182 4.182 25 C -0.134 4.134 26 C 0.068 3.932 27 O -0.397 6.397 28 C 0.056 3.944 29 C 0.069 3.931 30 H 0.030 0.970 31 H 0.044 0.956 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.033 0.967 35 H 0.260 0.740 36 H 0.036 0.964 37 H 0.066 0.934 38 H 0.410 0.590 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.105 0.895 44 H 0.073 0.927 45 H 0.060 0.940 46 H 0.094 0.906 47 H 0.050 0.950 48 H 0.101 0.899 49 H 0.102 0.898 50 H 0.100 0.900 51 H 0.099 0.901 52 H 0.077 0.923 53 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.078 11.548 13.515 18.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.141 4.141 3 C 0.106 3.894 4 H 0.017 0.983 5 C -0.581 4.581 6 H 0.075 0.925 7 C -0.177 4.177 8 N -0.550 5.550 9 Si 0.766 3.234 10 H -0.200 1.200 11 H -0.215 1.215 12 H -0.198 1.198 13 N -0.229 5.229 14 C -0.099 4.099 15 C 0.072 3.928 16 H 0.122 0.878 17 N -0.352 5.352 18 C 0.404 3.596 19 O -0.477 6.477 20 O -0.287 6.287 21 C 0.088 3.912 22 C -0.233 4.233 23 C -0.193 4.193 24 C -0.239 4.239 25 C -0.136 4.136 26 C -0.009 4.009 27 O -0.316 6.316 28 C -0.021 4.021 29 C -0.059 4.059 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.085 0.915 38 H 0.245 0.755 39 H 0.085 0.915 40 H 0.110 0.890 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.123 0.877 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.113 0.887 47 H 0.069 0.931 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.118 0.882 51 H 0.116 0.884 52 H 0.095 0.905 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.103 11.704 13.405 17.920 hybrid contribution 2.140 -0.350 -1.200 2.478 sum 4.243 11.354 12.205 17.201 Atomic orbital electron populations 1.21568 0.96327 0.99587 1.00815 1.21391 0.94406 0.97873 1.00464 1.19165 0.91924 0.91501 0.86839 0.98325 1.21885 0.93552 1.36853 1.05783 0.92529 1.25558 1.01406 0.95163 0.95588 1.70003 1.36218 1.38639 1.10096 0.85839 0.82059 0.78446 0.77011 1.19994 1.21509 1.19770 1.65161 1.53496 1.00931 1.03307 1.23219 0.99169 0.91499 0.96046 1.21481 0.80400 0.96186 0.94745 0.87821 1.44735 1.10381 1.06639 1.73467 1.18161 0.81663 0.83589 0.76191 1.90875 1.50043 1.52847 1.53965 1.86316 1.26293 1.32142 1.83980 1.22426 0.97823 0.75143 0.95841 1.22445 1.01553 1.00844 0.98427 1.21887 0.89991 1.03851 1.03544 1.22490 1.02851 1.03376 0.95209 1.23987 0.98948 0.94902 0.95734 1.23846 0.93413 0.98170 0.85466 1.89720 1.17847 1.66078 1.57927 1.23837 0.89898 0.99777 0.88629 1.22686 0.98957 0.95623 0.88630 0.95044 0.93735 0.92258 0.92093 0.94822 0.93080 0.94554 0.91539 0.75451 0.91538 0.88963 0.91817 0.92027 0.87670 0.90764 0.92054 0.88690 0.93118 0.88089 0.87963 0.88150 0.88351 0.90466 0.93153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.88 9.72 71.98 0.70 -4.18 16 2 C -0.10 -4.72 5.14 30.59 0.16 -4.57 16 3 C 0.21 10.22 1.79 44.17 0.08 10.30 16 4 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 5 C -0.54 -27.72 6.35 25.60 0.16 -27.56 16 6 H 0.06 2.84 6.07 -2.91 -0.02 2.83 16 7 C 0.02 1.22 5.30 84.65 0.45 1.66 16 8 N -0.91 -51.10 11.30 21.45 0.24 -50.86 16 9 Si 0.94 42.57 29.54 68.60 2.03 44.59 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 13 N -0.51 -19.80 4.77 -863.29 -4.12 -23.92 16 14 C 0.03 1.15 6.17 86.54 0.53 1.68 16 15 C 0.18 5.19 2.97 45.52 0.14 5.32 16 16 H 0.10 2.95 7.39 -2.39 -0.02 2.93 16 17 N -0.69 -19.92 4.48 -567.61 -2.54 -22.47 16 18 C 0.65 20.22 8.05 129.79 1.04 21.26 16 19 O -0.59 -20.28 11.59 19.80 0.23 -20.05 16 20 O -0.37 -10.52 9.94 -55.43 -0.55 -11.07 16 21 C 0.12 2.80 1.13 -10.79 -0.01 2.79 16 22 C -0.18 -3.53 8.37 71.98 0.60 -2.92 16 23 C -0.14 -2.17 8.85 71.98 0.64 -1.53 16 24 C -0.18 -4.43 8.37 71.98 0.60 -3.82 16 25 C -0.13 -3.60 0.96 -52.18 -0.05 -3.65 16 26 C 0.07 1.59 8.48 71.84 0.61 2.20 16 27 O -0.40 -10.50 12.46 -148.98 -1.86 -12.35 16 28 C 0.06 1.28 7.41 71.84 0.53 1.81 16 29 C 0.07 2.36 4.67 86.13 0.40 2.76 16 30 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 2.13 7.86 -2.39 -0.02 2.11 16 33 H 0.06 3.21 5.99 -2.39 -0.01 3.19 16 34 H 0.03 1.50 6.93 -2.39 -0.02 1.48 16 35 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 36 H 0.04 1.62 6.23 -2.39 -0.01 1.61 16 37 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.41 10.77 7.99 -92.71 -0.74 10.03 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.06 1.64 5.88 -2.39 -0.01 1.62 16 42 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.06 1.86 5.88 -2.39 -0.01 1.85 16 46 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 47 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.10 1.96 8.00 -2.39 -0.02 1.95 16 49 H 0.10 2.39 8.12 -2.39 -0.02 2.37 16 50 H 0.10 2.17 8.12 -2.39 -0.02 2.15 16 51 H 0.10 1.93 7.94 -2.38 -0.02 1.91 16 52 H 0.08 2.65 7.61 -2.38 -0.02 2.63 16 53 H 0.05 1.94 5.94 -2.39 -0.01 1.93 16 Total: -1.00 -62.21 402.94 0.17 -62.04 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: 0.16 Total: 32.53 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: 6.58 Total: 1.55 kcal Atomic # 7 Polarization: -90.82 SS G_CDS: -6.42 Total: -97.24 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -2.18 Total: -43.47 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Total: -62.21 0.17 -62.04 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177522.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.383 kcal (2) G-P(sol) polarization free energy of solvation -62.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds