Wall clock time and date at job start Sat Apr 11 2020 06:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52997 * 109.46999 * 2 1 4 4 H 1.08997 * 109.46992 * 54.94109 * 3 2 1 5 5 O 1.42895 * 109.47424 * 294.94067 * 3 2 1 6 6 C 1.42897 * 114.00413 * 152.22914 * 5 3 2 7 7 C 1.54265 * 110.03433 * 271.10787 * 6 5 3 8 8 C 1.54963 * 104.16107 * 217.13303 * 7 6 5 9 9 C 1.54890 * 102.77604 * 37.88579 * 8 7 6 10 10 C 1.53873 * 110.03526 * 153.88729 * 6 5 3 11 11 C 1.50696 * 109.46848 * 174.93884 * 3 2 1 12 12 O 1.21281 * 120.00023 * 115.00115 * 11 3 2 13 13 N 1.34781 * 120.00455 * 295.00256 * 11 3 2 14 14 C 1.46498 * 120.00280 * 180.02562 * 13 11 3 15 15 C 1.52997 * 109.47155 * 179.97438 * 14 13 11 16 16 H 1.09003 * 109.70948 * 59.27867 * 15 14 13 17 17 C 1.53714 * 109.74691 * 180.02562 * 15 14 13 18 18 O 1.42961 * 109.14622 * 172.16712 * 17 15 14 19 19 C 1.42966 * 114.16698 * 297.28757 * 18 17 15 20 20 C 1.53299 * 109.22201 * 62.58451 * 19 18 17 21 21 N 1.47152 * 108.38148 * 307.69472 * 20 19 18 22 22 C 1.36936 * 120.98558 * 230.51303 * 21 20 19 23 23 H 1.08002 * 120.00275 * 148.90320 * 22 21 20 24 24 C 1.38817 * 119.99724 * 328.90199 * 22 21 20 25 25 N 1.31615 * 120.00026 * 349.15698 * 24 22 21 26 26 Si 1.86798 * 119.99823 * 169.15670 * 24 22 21 27 27 H 1.48506 * 109.47078 * 269.99992 * 26 24 22 28 28 H 1.48499 * 109.47082 * 30.00092 * 26 24 22 29 29 H 1.48498 * 109.47011 * 150.00247 * 26 24 22 30 30 H 1.09002 * 109.46615 * 305.14302 * 1 2 3 31 31 H 1.08997 * 109.47072 * 65.14289 * 1 2 3 32 32 H 1.09000 * 109.46800 * 185.14414 * 1 2 3 33 33 H 1.09002 * 109.46731 * 239.99829 * 2 1 3 34 34 H 1.09002 * 109.46617 * 120.00203 * 2 1 3 35 35 H 1.09006 * 110.01144 * 32.49618 * 6 5 3 36 36 H 1.08995 * 110.48552 * 335.78240 * 7 6 5 37 37 H 1.08997 * 110.48810 * 98.42467 * 7 6 5 38 38 H 1.08999 * 110.71778 * 279.57293 * 8 7 6 39 39 H 1.08996 * 110.76443 * 156.21740 * 8 7 6 40 40 H 1.09003 * 110.48940 * 203.40729 * 9 8 7 41 41 H 1.09001 * 110.48923 * 80.76151 * 9 8 7 42 42 H 1.09003 * 110.02996 * 238.57317 * 10 6 5 43 43 H 1.09001 * 110.03327 * 359.97438 * 10 6 5 44 44 H 0.96999 * 119.99413 * 359.97438 * 13 11 3 45 45 H 1.09001 * 109.47298 * 59.99736 * 14 13 11 46 46 H 1.09003 * 109.46824 * 300.00003 * 14 13 11 47 47 H 1.08991 * 109.65467 * 52.20517 * 17 15 14 48 48 H 1.08997 * 109.48532 * 292.02373 * 17 15 14 49 49 H 1.08999 * 109.51431 * 302.66004 * 19 18 17 50 50 H 1.08998 * 109.55705 * 182.52650 * 19 18 17 51 51 H 1.09000 * 109.68324 * 187.97727 * 20 19 18 52 52 H 1.08997 * 109.71690 * 67.43499 * 20 19 18 53 53 H 0.96997 * 119.99904 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6046 1.9818 0.8412 5 8 1.6632 2.0810 -1.2216 6 6 1.5060 3.4971 -1.1129 7 6 0.0569 3.8385 -0.7090 8 6 -0.2635 5.1305 -1.5024 9 6 0.4413 4.8828 -2.8592 10 6 1.7507 4.1611 -2.4793 11 6 3.5418 1.4443 0.1253 12 8 4.2258 1.8607 -0.7855 13 7 4.1249 0.9831 1.2496 14 6 5.5847 0.9854 1.3716 15 6 5.9835 0.4155 2.7344 16 1 5.6039 -0.6015 2.8329 17 6 7.5147 0.4156 2.8694 18 8 7.8674 0.0551 4.2071 19 6 7.4053 0.9723 5.2016 20 6 5.8727 1.0044 5.1854 21 7 5.4285 1.2581 3.8056 22 6 4.5212 2.2452 3.5273 23 1 4.5611 2.7644 2.5811 24 6 3.5499 2.5786 4.4615 25 7 3.3617 1.8144 5.5164 26 14 2.5102 4.1117 4.2212 27 1 3.1775 5.2691 4.8698 28 1 2.3532 4.3808 2.7692 29 1 1.1734 3.9042 4.8336 30 1 -0.3632 0.5916 0.8404 31 1 -0.3633 0.4320 -0.9324 32 1 -0.3633 -1.0235 0.0921 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.2028 3.8942 -0.3746 36 1 -0.6196 3.0348 -0.9997 37 1 -0.0069 4.0228 0.3634 38 1 0.1561 6.0038 -1.0029 39 1 -1.3388 5.2425 -1.6405 40 1 0.6574 5.8291 -3.3552 41 1 -0.1728 4.2478 -3.4978 42 1 2.5656 4.8811 -2.4039 43 1 1.9898 3.4032 -3.2252 44 1 3.5778 0.6504 1.9782 45 1 5.9552 2.0067 1.2828 46 1 6.0164 0.3722 0.5805 47 1 7.9024 1.4094 2.6459 48 1 7.9411 -0.3067 2.1733 49 1 7.7926 1.9682 4.9866 50 1 7.7522 0.6510 6.1837 51 1 5.5152 1.8007 5.8383 52 1 5.4812 0.0462 5.5267 53 1 2.6828 2.0472 6.1689 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272893052.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:03 Heat of formation + Delta-G solvation = -134.099037 kcal Electronic energy + Delta-G solvation = -32421.469841 eV Core-core repulsion = 28292.692612 eV Total energy + Delta-G solvation = -4128.777229 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.28715 -40.19473 -39.40544 -37.25754 -36.82477 -35.37293 -34.31554 -33.16236 -32.12192 -29.70714 -29.30282 -28.92132 -28.14419 -26.31678 -25.24772 -23.48929 -22.92133 -21.80035 -21.46531 -21.34460 -21.09167 -18.95779 -18.30488 -18.00468 -17.58709 -17.16639 -16.89361 -16.40822 -16.27763 -16.10104 -15.82243 -15.52363 -15.44042 -15.17464 -14.95149 -14.75420 -14.71389 -14.33130 -14.30050 -13.63931 -13.47567 -13.26442 -13.14419 -12.91546 -12.87998 -12.77965 -12.75044 -12.52345 -12.16828 -12.08898 -12.05391 -12.02396 -11.99268 -11.87906 -11.87278 -11.55485 -11.53445 -11.34375 -11.27040 -10.73449 -10.59436 -10.19480 -9.89611 -8.63958 -7.88905 -5.40150 1.36259 1.42889 1.46928 1.61634 2.14640 2.41817 2.67868 3.02155 3.26496 3.42118 3.56768 3.60600 3.74307 3.87353 3.95738 3.98402 4.01979 4.20649 4.22205 4.30763 4.36542 4.46336 4.46659 4.49287 4.53854 4.59830 4.61863 4.64825 4.66303 4.73347 4.75062 4.84551 4.86957 4.98054 4.99210 5.04903 5.05523 5.09967 5.15277 5.18906 5.23063 5.28869 5.38007 5.40795 5.53266 5.62618 5.66510 6.09876 6.28105 6.35868 6.66112 7.08910 7.28015 7.74283 8.30963 9.15133 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012327 B = 0.003890 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.968155 B = 7196.839741 C = 8051.312606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 C 0.079 3.921 4 H 0.080 0.920 5 O -0.354 6.354 6 C 0.077 3.923 7 C -0.148 4.148 8 C -0.120 4.120 9 C -0.113 4.113 10 C -0.119 4.119 11 C 0.482 3.518 12 O -0.581 6.581 13 N -0.692 5.692 14 C 0.142 3.858 15 C 0.127 3.873 16 H 0.040 0.960 17 C 0.057 3.943 18 O -0.397 6.397 19 C 0.046 3.954 20 C 0.150 3.850 21 N -0.605 5.605 22 C -0.242 4.242 23 H 0.064 0.936 24 C -0.028 4.028 25 N -0.923 5.923 26 Si 0.939 3.061 27 H -0.293 1.293 28 H -0.276 1.276 29 H -0.289 1.289 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.031 0.969 36 H 0.086 0.914 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.412 0.588 45 H 0.046 0.954 46 H 0.078 0.922 47 H 0.048 0.952 48 H 0.117 0.883 49 H 0.042 0.958 50 H 0.105 0.895 51 H 0.066 0.934 52 H 0.008 0.992 53 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.020 -0.110 -10.417 11.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.147 4.147 3 C 0.017 3.983 4 H 0.098 0.902 5 O -0.272 6.272 6 C 0.019 3.981 7 C -0.185 4.185 8 C -0.157 4.157 9 C -0.151 4.151 10 C -0.156 4.156 11 C 0.269 3.731 12 O -0.462 6.462 13 N -0.344 5.344 14 C 0.018 3.982 15 C 0.021 3.979 16 H 0.058 0.942 17 C -0.021 4.021 18 O -0.315 6.315 19 C -0.032 4.032 20 C 0.024 3.976 21 N -0.331 5.331 22 C -0.372 4.372 23 H 0.082 0.918 24 C -0.225 4.225 25 N -0.568 5.568 26 Si 0.768 3.232 27 H -0.220 1.220 28 H -0.201 1.201 29 H -0.215 1.215 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.050 0.950 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.249 0.751 45 H 0.065 0.935 46 H 0.097 0.903 47 H 0.066 0.934 48 H 0.135 0.865 49 H 0.060 0.940 50 H 0.123 0.877 51 H 0.084 0.916 52 H 0.027 0.973 53 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.580 -0.061 -11.065 11.976 hybrid contribution -0.641 1.188 1.087 1.733 sum -5.222 1.127 -9.978 11.318 Atomic orbital electron populations 1.21685 0.93019 1.02891 1.02278 1.21567 0.98507 0.91063 1.03544 1.22125 0.89410 0.97697 0.89023 0.90240 1.87967 1.87903 1.20177 1.31132 1.22966 0.96224 0.80712 0.98190 1.22950 0.95745 0.99794 1.00051 1.22461 1.01608 0.96188 0.95438 1.22322 0.94780 1.00647 0.97318 1.22161 0.99205 0.99103 0.95164 1.21755 0.92177 0.77300 0.81904 1.90612 1.66040 1.48792 1.40729 1.46051 1.08019 1.62729 1.17551 1.21099 0.80720 1.00326 0.96090 1.21628 0.94318 0.93957 0.87987 0.94202 1.23057 0.93935 1.00996 0.84131 1.87806 1.77156 1.50525 1.16019 1.23222 0.95587 0.92453 0.91957 1.21241 0.90721 0.98832 0.86774 1.44306 1.49274 1.37376 1.02162 1.19213 1.05450 1.10043 1.02455 0.91798 1.25567 0.98288 1.00167 0.98526 1.70079 1.35210 1.38052 1.13501 0.85717 0.78740 0.81077 0.77650 1.21986 1.20126 1.21499 0.92775 0.91993 0.90592 0.90662 0.89604 0.95030 0.89524 0.92392 0.91556 0.89268 0.89938 0.90443 0.91663 0.91165 0.75114 0.93538 0.90347 0.93408 0.86497 0.93969 0.87719 0.91590 0.97345 0.93953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.76 71.99 0.70 -2.34 16 2 C -0.11 -2.83 5.61 30.60 0.17 -2.66 16 3 C 0.08 2.55 2.34 29.85 0.07 2.62 16 4 H 0.08 2.64 7.83 -2.39 -0.02 2.62 16 5 O -0.35 -11.53 8.73 -129.99 -1.13 -12.66 16 6 C 0.08 2.33 3.11 31.32 0.10 2.43 16 7 C -0.15 -3.61 6.51 31.69 0.21 -3.41 16 8 C -0.12 -2.32 6.91 31.91 0.22 -2.10 16 9 C -0.11 -2.16 6.83 31.67 0.22 -1.94 16 10 C -0.12 -3.10 6.61 31.32 0.21 -2.89 16 11 C 0.48 18.39 7.02 87.66 0.62 19.00 16 12 O -0.58 -25.65 16.49 15.96 0.26 -25.39 16 13 N -0.69 -25.80 3.71 -463.06 -1.72 -27.51 16 14 C 0.14 5.16 4.45 86.38 0.38 5.55 16 15 C 0.13 4.78 3.22 45.11 0.15 4.93 16 16 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 17 C 0.06 1.89 6.31 72.22 0.46 2.34 16 18 O -0.40 -14.40 10.74 -148.98 -1.60 -16.00 16 19 C 0.05 1.67 6.99 72.08 0.50 2.17 16 20 C 0.15 6.71 5.38 86.36 0.46 7.17 16 21 N -0.61 -27.29 3.03 -672.92 -2.04 -29.32 16 22 C -0.24 -11.76 7.09 84.03 0.60 -11.16 16 23 H 0.06 3.21 5.83 -2.91 -0.02 3.20 16 24 C -0.03 -1.44 5.06 84.86 0.43 -1.01 16 25 N -0.92 -49.23 11.13 21.65 0.24 -48.99 16 26 Si 0.94 42.00 29.57 68.60 2.03 44.03 16 27 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 28 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 29 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.32 7.96 -2.39 -0.02 1.30 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.09 2.15 7.77 -2.39 -0.02 2.14 16 35 H 0.03 1.13 7.81 -2.38 -0.02 1.11 16 36 H 0.09 1.96 8.08 -2.39 -0.02 1.94 16 37 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.07 1.94 7.95 -2.39 -0.02 1.92 16 44 H 0.41 15.85 7.08 -92.71 -0.66 15.19 16 45 H 0.05 1.88 7.53 -2.39 -0.02 1.86 16 46 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 47 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 49 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 50 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 51 H 0.07 3.30 6.33 -2.39 -0.02 3.28 16 52 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 53 H 0.25 13.19 8.31 -92.71 -0.77 12.42 16 Total: -1.00 -61.42 410.65 1.75 -59.67 By element: Atomic # 1 Polarization: 37.24 SS G_CDS: 0.22 Total: 37.46 kcal Atomic # 6 Polarization: 13.23 SS G_CDS: 5.49 Total: 18.72 kcal Atomic # 7 Polarization: -102.31 SS G_CDS: -3.51 Total: -105.82 kcal Atomic # 8 Polarization: -51.58 SS G_CDS: -2.47 Total: -54.06 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -61.42 1.75 -59.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272893052.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.432 kcal (2) G-P(sol) polarization free energy of solvation -61.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds