Wall clock time and date at job start Sat Apr 11 2020 06:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46973 * 2 1 4 4 H 1.08999 * 109.47227 * 304.99491 * 3 2 1 5 5 O 1.42900 * 109.47111 * 65.00039 * 3 2 1 6 6 C 1.53004 * 109.46675 * 184.99522 * 3 2 1 7 7 N 1.46902 * 109.46800 * 179.32482 * 6 3 2 8 8 C 1.48475 * 111.00019 * 296.57073 * 7 6 3 9 9 C 1.54190 * 111.97122 * 192.45884 * 8 7 6 10 10 O 1.39980 * 113.26970 * 318.70173 * 9 8 7 11 11 C 1.44612 * 112.93704 * 94.39681 * 10 9 8 12 12 C 1.46308 * 111.22059 * 280.77753 * 11 10 9 13 13 C 1.54588 * 112.56104 * 182.42655 * 12 11 10 14 14 C 1.51296 * 104.28191 * 145.18490 * 13 12 11 15 15 O 1.21278 * 124.94205 * 164.08391 * 14 13 12 16 16 N 1.34431 * 110.11450 * 344.22683 * 14 13 12 17 17 C 1.46507 * 124.34857 * 179.45468 * 16 14 13 18 18 C 1.52998 * 109.47249 * 269.70114 * 17 16 14 19 19 C 1.50697 * 109.46891 * 179.97438 * 18 17 16 20 20 H 1.07993 * 120.00218 * 359.97438 * 19 18 17 21 21 C 1.37881 * 120.00034 * 180.02562 * 19 18 17 22 22 N 1.31518 * 119.99599 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00345 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47293 * 179.97438 * 23 21 19 25 25 H 1.48506 * 109.46765 * 60.00164 * 23 21 19 26 26 H 1.48496 * 109.47056 * 300.00132 * 23 21 19 27 27 C 1.46759 * 111.30563 * 359.19235 * 16 14 13 28 28 C 1.44078 * 111.00117 * 168.45453 * 7 6 3 29 29 H 1.09000 * 109.47519 * 300.00310 * 1 2 3 30 30 H 1.08999 * 109.46828 * 60.00535 * 1 2 3 31 31 H 1.09004 * 109.47055 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47519 * 239.99690 * 2 1 3 33 33 H 1.09002 * 109.47102 * 120.00178 * 2 1 3 34 34 H 0.96705 * 114.00094 * 59.99912 * 5 3 2 35 35 H 1.08999 * 109.46999 * 59.32852 * 6 3 2 36 36 H 1.08994 * 109.47810 * 299.32451 * 6 3 2 37 37 H 1.09000 * 108.98083 * 71.81992 * 8 7 6 38 38 H 1.08993 * 108.91798 * 313.06242 * 8 7 6 39 39 H 1.09001 * 108.72520 * 197.71893 * 9 8 7 40 40 H 1.09000 * 108.72187 * 79.68110 * 9 8 7 41 41 H 1.09001 * 109.12743 * 160.32864 * 11 10 9 42 42 H 1.09003 * 109.08181 * 41.18971 * 11 10 9 43 43 H 1.09001 * 110.48060 * 264.05725 * 13 12 11 44 44 H 1.09001 * 110.48377 * 26.68900 * 13 12 11 45 45 H 1.08996 * 109.46930 * 149.69593 * 17 16 14 46 46 H 1.09002 * 109.46533 * 29.70057 * 17 16 14 47 47 H 1.09001 * 109.46905 * 59.99935 * 18 17 16 48 48 H 1.08994 * 109.46904 * 299.99912 * 18 17 16 49 49 H 0.96994 * 120.00428 * 0.02562 * 22 21 19 50 50 H 1.08998 * 110.24392 * 136.16904 * 27 16 14 51 51 H 1.09000 * 110.23978 * 258.07121 * 27 16 14 52 52 H 1.08992 * 109.72988 * 99.88713 * 28 7 6 53 53 H 1.09006 * 109.72469 * 339.21433 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 8 1.6619 2.0814 1.2211 6 6 3.5648 1.4443 -0.1256 7 7 4.0531 2.8297 -0.1419 8 6 3.5457 3.5588 -1.3316 9 6 4.2768 4.9001 -1.5414 10 8 4.5031 5.5988 -0.3497 11 6 5.8083 5.3397 0.2163 12 6 5.8328 4.0614 0.9278 13 6 7.1979 3.7810 1.5968 14 6 6.8449 3.0479 2.8723 15 8 7.6267 2.4124 3.5473 16 7 5.5378 3.2008 3.1468 17 6 4.8618 2.6108 4.3050 18 6 4.3192 1.2303 3.9302 19 6 3.6245 0.6232 5.1218 20 1 3.5753 1.1674 6.0533 21 6 3.0526 -0.6275 5.0230 22 7 3.1130 -1.2904 3.8888 23 14 2.1920 -1.3803 6.5002 24 1 1.6653 -2.7202 6.1364 25 1 1.0683 -0.5040 6.9180 26 1 3.1578 -1.5149 7.6202 27 6 4.8762 4.0398 2.1407 28 6 5.4851 2.8743 0.0111 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.0141 1.6542 2.0139 35 1 3.8537 0.9464 -1.0512 36 1 3.9999 0.9157 0.7224 37 1 2.4809 3.7520 -1.2014 38 1 3.6872 2.9359 -2.2147 39 1 3.6787 5.5245 -2.2050 40 1 5.2363 4.7044 -2.0199 41 1 6.0615 6.1402 0.9114 42 1 6.5463 5.3162 -0.5856 43 1 7.8166 3.1555 0.9533 44 1 7.7090 4.7158 1.8271 45 1 4.0373 3.2545 4.6111 46 1 5.5702 2.5118 5.1275 47 1 5.1440 0.5866 3.6241 48 1 3.6110 1.3293 3.1077 49 1 3.5602 -0.8997 3.1218 50 1 3.9180 3.6043 1.8575 51 1 4.7319 5.0488 2.5269 52 1 5.9550 3.0114 -0.9627 53 1 5.8360 1.9460 0.4622 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274553589.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:08 Heat of formation + Delta-G solvation = -148.679882 kcal Electronic energy + Delta-G solvation = -33525.542547 eV Core-core repulsion = 29396.133045 eV Total energy + Delta-G solvation = -4129.409502 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.21577 -40.19439 -38.99132 -37.51399 -36.73040 -36.17242 -34.57213 -33.66290 -31.61315 -30.65406 -29.51591 -28.39229 -27.20454 -26.58150 -25.58797 -24.08257 -23.54063 -22.50711 -21.52234 -20.79982 -20.32414 -18.99701 -17.94522 -17.49459 -17.44031 -17.24455 -16.83542 -16.75915 -16.40163 -15.95728 -15.88198 -15.64371 -15.42013 -15.12900 -14.98602 -14.70779 -14.47937 -14.45577 -14.11337 -14.07786 -13.77253 -13.50001 -13.40122 -13.23945 -13.02364 -12.82268 -12.71565 -12.65382 -12.37215 -12.17940 -12.05399 -11.97992 -11.93283 -11.90571 -11.78942 -11.55734 -11.41384 -11.00190 -10.73777 -10.71538 -10.52267 -10.46540 -9.56956 -9.06919 -8.66085 -6.36509 1.52133 1.57514 1.60080 1.78832 2.16355 2.56049 2.59574 2.98520 3.17702 3.37145 3.46714 3.59222 3.65063 3.68273 3.86869 3.99227 4.11390 4.12255 4.19810 4.21855 4.25236 4.33358 4.38727 4.43369 4.53605 4.54106 4.57469 4.63313 4.65241 4.69904 4.74663 4.78001 4.79676 4.83797 4.85222 4.91735 5.02742 5.05548 5.14324 5.18686 5.21657 5.28752 5.34350 5.36550 5.63343 5.99566 6.01006 6.17742 6.22881 6.32783 6.42188 6.57467 6.72676 7.19186 7.43022 8.73875 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009609 B = 0.005222 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.102572 B = 5360.608916 C = 7572.998754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.156 4.156 3 C 0.121 3.879 4 H 0.110 0.890 5 O -0.561 6.561 6 C 0.038 3.962 7 N -0.541 5.541 8 C 0.030 3.970 9 C 0.060 3.940 10 O -0.372 6.372 11 C 0.081 3.919 12 C -0.082 4.082 13 C -0.128 4.128 14 C 0.493 3.507 15 O -0.599 6.599 16 N -0.609 5.609 17 C 0.146 3.854 18 C 0.025 3.975 19 C -0.618 4.618 20 H 0.048 0.952 21 C -0.026 4.026 22 N -0.926 5.926 23 Si 1.112 2.888 24 H -0.284 1.284 25 H -0.266 1.266 26 H -0.277 1.277 27 C 0.116 3.884 28 C 0.075 3.925 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.038 0.962 34 H 0.369 0.631 35 H 0.052 0.948 36 H 0.042 0.958 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.104 0.896 40 H 0.065 0.935 41 H 0.109 0.891 42 H 0.089 0.911 43 H 0.113 0.887 44 H 0.135 0.865 45 H 0.080 0.920 46 H 0.046 0.954 47 H -0.037 1.037 48 H 0.009 0.991 49 H 0.255 0.745 50 H 0.098 0.902 51 H 0.071 0.929 52 H 0.071 0.929 53 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.302 13.808 -17.370 22.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.195 4.195 3 C 0.062 3.938 4 H 0.127 0.873 5 O -0.367 6.367 6 C -0.090 4.090 7 N -0.265 5.265 8 C -0.097 4.097 9 C -0.018 4.018 10 O -0.290 6.290 11 C 0.005 3.995 12 C -0.083 4.083 13 C -0.168 4.168 14 C 0.282 3.718 15 O -0.481 6.481 16 N -0.340 5.340 17 C 0.024 3.976 18 C -0.013 4.013 19 C -0.657 4.657 20 H 0.067 0.933 21 C -0.225 4.225 22 N -0.562 5.562 23 Si 0.934 3.066 24 H -0.209 1.209 25 H -0.191 1.191 26 H -0.203 1.203 27 C -0.005 4.005 28 C -0.054 4.054 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.057 0.943 34 H 0.217 0.783 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.122 0.878 40 H 0.083 0.917 41 H 0.127 0.873 42 H 0.107 0.893 43 H 0.132 0.868 44 H 0.153 0.847 45 H 0.098 0.902 46 H 0.064 0.936 47 H -0.018 1.018 48 H 0.028 0.972 49 H 0.064 0.936 50 H 0.116 0.884 51 H 0.089 0.911 52 H 0.089 0.911 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.189 12.906 -16.417 20.883 hybrid contribution 1.713 -0.482 -0.367 1.817 sum 1.902 12.425 -16.783 20.968 Atomic orbital electron populations 1.21590 0.94442 1.01546 1.01961 1.22191 0.97821 0.97353 1.02096 1.21925 0.91877 0.92183 0.87857 0.87277 1.86462 1.76741 1.57592 1.15860 1.22760 0.96916 0.89043 1.00246 1.60207 1.10652 1.13658 1.41994 1.23321 1.00883 0.95483 0.90001 1.22468 1.00538 0.91829 0.86958 1.87861 1.35231 1.65584 1.40289 1.21623 0.85157 0.94256 0.98503 1.21072 0.93400 0.98350 0.95520 1.22389 0.98029 1.03185 0.93196 1.21765 0.82035 0.80046 0.87914 1.90665 1.54853 1.45255 1.57323 1.48638 1.09521 1.49601 1.26233 1.21182 0.95485 0.94658 0.86286 1.19235 0.93486 0.92171 0.96410 1.22294 1.39323 1.05344 0.98707 0.93332 1.27181 0.96565 0.94911 1.03874 1.70921 1.42438 1.40336 1.02534 0.82987 0.76071 0.75738 0.71782 1.20898 1.19139 1.20292 1.22348 0.98290 0.94133 0.85774 1.21773 0.88077 0.96870 0.98714 0.93894 0.91133 0.92688 0.89980 0.94290 0.78293 0.92971 0.93930 0.90884 0.92621 0.87794 0.91706 0.87287 0.89293 0.86849 0.84731 0.90186 0.93554 1.01834 0.97249 0.93595 0.88396 0.91085 0.91122 0.93852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 9.81 71.98 0.71 -3.00 16 2 C -0.16 -4.53 5.61 30.59 0.17 -4.36 16 3 C 0.12 3.36 2.80 30.60 0.09 3.45 16 4 H 0.11 2.60 6.72 -2.39 -0.02 2.58 16 5 O -0.56 -19.60 12.75 -148.98 -1.90 -21.50 16 6 C 0.04 1.05 4.50 86.30 0.39 1.44 16 7 N -0.54 -12.84 2.21 -894.82 -1.98 -14.81 16 8 C 0.03 0.53 5.24 86.40 0.45 0.98 16 9 C 0.06 0.83 6.05 72.39 0.44 1.27 16 10 O -0.37 -6.81 10.34 -140.54 -1.45 -8.26 16 11 C 0.08 1.17 4.90 69.92 0.34 1.52 16 12 C -0.08 -1.71 0.63 -52.87 -0.03 -1.74 16 13 C -0.13 -2.90 5.75 30.58 0.18 -2.72 16 14 C 0.49 18.48 7.88 87.90 0.69 19.17 16 15 O -0.60 -28.80 17.59 -3.02 -0.05 -28.85 16 16 N -0.61 -22.71 2.93 -817.95 -2.40 -25.11 16 17 C 0.15 6.56 5.88 86.38 0.51 7.07 16 18 C 0.02 1.31 4.61 29.85 0.14 1.45 16 19 C -0.62 -35.57 9.11 25.60 0.23 -35.33 16 20 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 21 C -0.03 -1.52 5.46 84.66 0.46 -1.06 16 22 N -0.93 -56.10 13.65 21.45 0.29 -55.81 16 23 Si 1.11 50.95 29.90 68.60 2.05 53.01 16 24 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 27 C 0.12 3.38 6.08 86.83 0.53 3.91 16 28 C 0.07 1.67 4.25 87.16 0.37 2.04 16 29 H 0.04 1.31 7.82 -2.39 -0.02 1.29 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.37 14.88 7.40 -74.05 -0.55 14.34 16 35 H 0.05 1.24 8.04 -2.39 -0.02 1.22 16 36 H 0.04 1.53 7.73 -2.39 -0.02 1.51 16 37 H 0.07 1.46 7.02 -2.39 -0.02 1.44 16 38 H 0.06 0.81 7.96 -2.39 -0.02 0.79 16 39 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.06 0.64 6.58 -2.39 -0.02 0.63 16 41 H 0.11 1.33 8.12 -2.39 -0.02 1.31 16 42 H 0.09 0.80 7.48 -2.39 -0.02 0.78 16 43 H 0.11 2.28 7.86 -2.39 -0.02 2.27 16 44 H 0.13 2.20 7.95 -2.39 -0.02 2.18 16 45 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 46 H 0.05 2.26 7.92 -2.39 -0.02 2.24 16 47 H -0.04 -2.24 8.01 -2.39 -0.02 -2.26 16 48 H 0.01 0.49 6.36 -2.39 -0.02 0.48 16 49 H 0.25 15.62 7.22 -92.71 -0.67 14.95 16 50 H 0.10 3.31 6.37 -2.39 -0.02 3.30 16 51 H 0.07 1.89 7.94 -2.39 -0.02 1.87 16 52 H 0.07 1.18 6.91 -2.39 -0.02 1.16 16 53 H 0.04 1.26 7.05 -2.38 -0.02 1.24 16 Total: -1.00 -75.36 404.30 0.67 -74.69 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: 0.44 Total: 32.55 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: 5.66 Total: -5.91 kcal Atomic # 7 Polarization: -91.65 SS G_CDS: -4.08 Total: -95.73 kcal Atomic # 8 Polarization: -55.20 SS G_CDS: -3.41 Total: -58.61 kcal Atomic # 14 Polarization: 50.95 SS G_CDS: 2.05 Total: 53.01 kcal Total: -75.36 0.67 -74.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274553589.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.987 kcal (2) G-P(sol) polarization free energy of solvation -75.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds