Wall clock time and date at job start Sat Apr 11 2020 06:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47088 * 2 1 4 4 H 1.08992 * 109.47289 * 54.48591 * 3 2 1 5 5 O 1.42908 * 109.46558 * 294.48297 * 3 2 1 6 6 C 1.42901 * 113.99579 * 116.05895 * 5 3 2 7 7 C 1.50703 * 109.46981 * 174.48806 * 3 2 1 8 8 O 1.21285 * 119.99991 * 114.99639 * 7 3 2 9 9 N 1.34775 * 119.99949 * 294.99403 * 7 3 2 10 10 C 1.46929 * 120.58816 * 359.72114 * 9 7 3 11 11 C 1.53280 * 108.71861 * 234.46125 * 10 9 7 12 12 C 1.52426 * 109.42131 * 306.28072 * 11 10 9 13 13 C 1.53605 * 110.44230 * 297.00556 * 12 11 10 14 14 O 1.43887 * 107.11650 * 239.50722 * 13 12 11 15 15 C 1.44429 * 106.99934 * 26.36686 * 14 13 12 16 16 H 1.08992 * 110.61191 * 78.93118 * 15 14 13 17 17 C 1.52999 * 110.60448 * 201.74201 * 15 14 13 18 18 N 1.46503 * 109.47263 * 298.54495 * 17 15 14 19 19 C 1.36930 * 120.00276 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99957 * 359.97438 * 19 18 17 21 21 C 1.38814 * 120.00429 * 179.97438 * 19 18 17 22 22 N 1.31607 * 120.00426 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99565 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.47158 * 90.00156 * 23 21 19 25 25 H 1.48498 * 109.47154 * 210.00072 * 23 21 19 26 26 H 1.48503 * 109.47193 * 330.00364 * 23 21 19 27 27 C 1.54323 * 110.03752 * 181.93041 * 12 11 10 28 28 C 1.52418 * 110.98423 * 59.86633 * 12 11 10 29 29 C 1.46927 * 120.59067 * 180.02562 * 9 7 3 30 30 H 1.09008 * 109.47013 * 173.71910 * 1 2 3 31 31 H 1.08994 * 109.47547 * 293.72171 * 1 2 3 32 32 H 1.08999 * 109.46960 * 53.72241 * 1 2 3 33 33 H 1.08998 * 109.47422 * 239.99558 * 2 1 3 34 34 H 1.09005 * 109.46887 * 119.99427 * 2 1 3 35 35 H 1.08995 * 109.46953 * 305.40271 * 6 5 3 36 36 H 1.08999 * 109.47543 * 65.40592 * 6 5 3 37 37 H 1.08999 * 109.46768 * 185.40415 * 6 5 3 38 38 H 1.09002 * 109.59595 * 354.23734 * 10 9 7 39 39 H 1.09000 * 109.59674 * 114.68690 * 10 9 7 40 40 H 1.09003 * 109.48107 * 186.29236 * 11 10 9 41 41 H 1.09006 * 109.47859 * 66.26847 * 11 10 9 42 42 H 1.08996 * 109.90327 * 358.87947 * 13 12 11 43 43 H 1.08998 * 109.90513 * 119.94844 * 13 12 11 44 44 H 1.09001 * 109.47551 * 58.54480 * 17 15 14 45 45 H 1.09004 * 109.47035 * 178.54269 * 17 15 14 46 46 H 0.97004 * 119.99816 * 359.97438 * 18 17 15 47 47 H 0.96997 * 120.00567 * 180.02562 * 22 21 19 48 48 H 1.08999 * 110.93053 * 216.20302 * 27 12 11 49 49 H 1.08996 * 110.93014 * 339.87377 * 27 12 11 50 50 H 1.08997 * 109.48005 * 180.16482 * 28 12 11 51 51 H 1.09002 * 109.48559 * 60.14130 * 28 12 11 52 52 H 1.08998 * 109.59487 * 245.32663 * 29 9 7 53 53 H 1.09000 * 109.59444 * 5.78262 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5983 1.9840 0.8364 5 8 1.6723 2.0776 -1.2262 6 6 0.7713 3.1751 -1.0649 7 6 3.5408 1.4446 0.1365 8 8 4.2316 1.8586 -0.7704 9 7 4.1154 0.9866 1.2663 10 6 3.2907 0.4878 2.3753 11 6 3.6740 1.2442 3.6522 12 6 5.1787 1.1384 3.8716 13 6 5.5873 -0.3260 4.0907 14 8 6.2048 -0.4038 5.3880 15 6 5.6585 0.6726 6.1810 16 1 4.6683 0.4105 6.5533 17 6 6.5949 1.0155 7.3413 18 7 6.7392 -0.1525 8.2139 19 6 7.5348 -0.0820 9.3262 20 1 8.0562 0.8344 9.5600 21 6 7.6711 -1.1885 10.1533 22 7 8.4353 -1.1206 11.2226 23 14 6.7687 -2.7733 9.7493 24 1 7.6255 -3.6244 8.8850 25 1 6.4572 -3.4999 11.0064 26 1 5.5060 -2.4558 9.0352 27 6 5.5739 1.8547 5.1802 28 6 5.9449 1.7354 2.6970 29 6 5.5773 0.9832 1.4134 30 1 -0.3633 -1.0216 -0.1124 31 1 -0.3634 0.4134 0.9408 32 1 -0.3633 0.6081 -0.8285 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 -0.1073 2.8453 -0.5106 36 1 1.2680 3.9753 -0.5163 37 1 0.4661 3.5416 -2.0450 38 1 2.2372 0.6570 2.1524 39 1 3.4706 -0.5783 2.5140 40 1 3.1510 0.8087 4.5036 41 1 3.3942 2.2929 3.5513 42 1 4.7054 -0.9658 4.0604 43 1 6.2949 -0.6330 3.3206 44 1 7.5716 1.2985 6.9487 45 1 6.1780 1.8457 7.9115 46 1 6.2706 -0.9755 8.0041 47 1 8.5309 -1.8939 11.8004 48 1 6.5406 2.3478 5.0775 49 1 4.8054 2.5662 5.4821 50 1 7.0159 1.6444 2.8777 51 1 5.6827 2.7879 2.5891 52 1 5.9360 -0.0441 1.4766 53 1 6.0321 1.4795 0.5562 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276912934.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:21 Heat of formation + Delta-G solvation = -134.823669 kcal Electronic energy + Delta-G solvation = -31277.137830 eV Core-core repulsion = 27148.329178 eV Total energy + Delta-G solvation = -4128.808652 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.03026 -40.80712 -38.84467 -37.88253 -36.52258 -35.04626 -33.94344 -33.69422 -32.27581 -31.41915 -29.40593 -28.24550 -26.89909 -26.74248 -24.98362 -24.42522 -23.74622 -22.72206 -22.17143 -21.19606 -19.78871 -19.45029 -18.56369 -17.84498 -17.26948 -17.04208 -16.78384 -16.57498 -16.28691 -16.21651 -15.84193 -15.72487 -15.42833 -14.96542 -14.80755 -14.66764 -14.62800 -14.43833 -14.19139 -13.98300 -13.69626 -13.64051 -13.44625 -13.31317 -12.97493 -12.95344 -12.83463 -12.52910 -12.39656 -12.35518 -12.22882 -12.17928 -12.07367 -11.86335 -11.75143 -11.54719 -11.43807 -11.30463 -11.12058 -11.01195 -10.52333 -10.34838 -9.70860 -9.30003 -8.03136 -5.35990 1.37440 1.42340 1.47652 1.49161 1.75597 2.48875 2.83504 2.92386 3.28447 3.34709 3.40245 3.53946 3.68904 3.76828 3.81497 3.86458 4.02238 4.03870 4.15873 4.22774 4.23234 4.30855 4.34534 4.40122 4.48153 4.51036 4.53933 4.54414 4.61923 4.66687 4.73925 4.78493 4.81324 4.84782 4.90388 4.95307 4.97537 5.02182 5.07100 5.08408 5.16286 5.18484 5.26798 5.28544 5.39825 5.48506 5.73601 6.02629 6.08410 6.21220 6.33747 7.07723 7.08284 7.84404 8.03961 9.18294 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023082 B = 0.002237 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.775459 B =12515.289372 C =12991.727067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.135 4.135 3 C 0.076 3.924 4 H 0.117 0.883 5 O -0.388 6.388 6 C 0.021 3.979 7 C 0.498 3.502 8 O -0.578 6.578 9 N -0.601 5.601 10 C 0.093 3.907 11 C -0.119 4.119 12 C -0.082 4.082 13 C 0.047 3.953 14 O -0.397 6.397 15 C 0.074 3.926 16 H 0.079 0.921 17 C 0.157 3.843 18 N -0.756 5.756 19 C -0.236 4.236 20 H 0.057 0.943 21 C -0.066 4.066 22 N -0.983 5.983 23 Si 0.959 3.041 24 H -0.283 1.283 25 H -0.292 1.292 26 H -0.251 1.251 27 C -0.128 4.128 28 C -0.110 4.110 29 C 0.109 3.891 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.101 0.899 35 H 0.069 0.931 36 H 0.042 0.958 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.020 0.980 45 H 0.047 0.953 46 H 0.367 0.633 47 H 0.258 0.742 48 H 0.075 0.925 49 H 0.103 0.897 50 H 0.077 0.923 51 H 0.071 0.929 52 H 0.079 0.921 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.106 6.040 -25.890 34.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.173 4.173 3 C 0.014 3.986 4 H 0.134 0.866 5 O -0.306 6.306 6 C -0.075 4.075 7 C 0.287 3.713 8 O -0.457 6.457 9 N -0.336 5.336 10 C -0.028 4.028 11 C -0.157 4.157 12 C -0.082 4.082 13 C -0.030 4.030 14 O -0.317 6.317 15 C 0.017 3.983 16 H 0.097 0.903 17 C 0.031 3.969 18 N -0.401 5.401 19 C -0.367 4.367 20 H 0.075 0.925 21 C -0.257 4.257 22 N -0.634 5.634 23 Si 0.786 3.214 24 H -0.210 1.210 25 H -0.219 1.219 26 H -0.176 1.176 27 C -0.166 4.166 28 C -0.148 4.148 29 C -0.013 4.013 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.120 0.880 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.114 0.886 38 H 0.133 0.867 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.102 0.898 44 H 0.038 0.962 45 H 0.065 0.935 46 H 0.201 0.799 47 H 0.067 0.933 48 H 0.094 0.906 49 H 0.122 0.878 50 H 0.096 0.904 51 H 0.089 0.911 52 H 0.097 0.903 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -21.398 6.169 -26.359 34.507 hybrid contribution 0.263 -0.630 0.361 0.772 sum -21.135 5.539 -25.998 33.960 Atomic orbital electron populations 1.21758 0.93093 1.03023 1.02781 1.22030 0.98464 0.92865 1.03936 1.22185 0.89640 0.97216 0.89519 0.86593 1.87995 1.65759 1.48018 1.28839 1.23135 0.92449 0.87984 1.03917 1.21523 0.91788 0.76428 0.81557 1.90683 1.65749 1.48284 1.41002 1.48167 1.07259 1.62371 1.15761 1.22312 0.96236 0.99361 0.84932 1.21951 0.93201 1.02414 0.98091 1.21428 0.97090 0.94749 0.94969 1.23499 0.98345 0.95989 0.85132 1.89024 1.66229 1.52005 1.24459 1.23383 0.96288 0.87188 0.91474 0.90333 1.20914 0.96910 0.89603 0.89500 1.42625 1.57131 1.12653 1.27706 1.19065 1.19558 0.98169 0.99913 0.92533 1.25528 1.01251 1.01741 0.97205 1.69879 1.44659 1.31421 1.17432 0.85349 0.79494 0.79695 0.76870 1.20959 1.21858 1.17567 1.23147 1.03489 0.97168 0.92828 1.21778 1.00426 0.99925 0.92672 1.21647 0.80026 1.01363 0.98310 0.91389 0.90744 0.92739 0.92314 0.88039 0.91284 0.93930 0.88607 0.86685 0.89371 0.88584 0.89968 0.90803 0.89831 0.96154 0.93546 0.79949 0.93295 0.90645 0.87837 0.90431 0.91052 0.90320 0.90667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.86 71.98 0.71 -0.21 16 2 C -0.14 -1.30 5.17 30.59 0.16 -1.14 16 3 C 0.08 1.01 1.81 29.85 0.05 1.07 16 4 H 0.12 0.85 6.90 -2.39 -0.02 0.83 16 5 O -0.39 -7.06 9.37 -129.99 -1.22 -8.28 16 6 C 0.02 0.22 10.47 113.37 1.19 1.40 16 7 C 0.50 9.97 7.12 87.66 0.62 10.59 16 8 O -0.58 -17.58 15.91 15.94 0.25 -17.33 16 9 N -0.60 -8.90 2.96 -818.61 -2.43 -11.33 16 10 C 0.09 0.76 4.60 86.39 0.40 1.15 16 11 C -0.12 -1.12 4.59 30.50 0.14 -0.98 16 12 C -0.08 -1.25 0.61 -51.91 -0.03 -1.28 16 13 C 0.05 0.92 6.16 72.19 0.44 1.36 16 14 O -0.40 -12.22 11.10 -148.98 -1.65 -13.88 16 15 C 0.07 2.05 3.42 31.32 0.11 2.16 16 16 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 17 C 0.16 5.96 6.02 86.38 0.52 6.48 16 18 N -0.76 -36.66 5.34 -343.44 -1.83 -38.49 16 19 C -0.24 -13.89 10.47 84.04 0.88 -13.01 16 20 H 0.06 3.61 8.06 -2.91 -0.02 3.59 16 21 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 22 N -0.98 -64.11 13.97 21.65 0.30 -63.81 16 23 Si 0.96 46.81 27.73 68.60 1.90 48.72 16 24 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 25 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 26 H -0.25 -11.04 6.52 99.48 0.65 -10.39 16 27 C -0.13 -2.45 5.67 31.77 0.18 -2.27 16 28 C -0.11 -1.71 4.62 30.48 0.14 -1.57 16 29 C 0.11 1.81 6.13 86.38 0.53 2.34 16 30 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 31 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.05 0.43 7.03 -2.39 -0.02 0.42 16 33 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.10 0.60 5.45 -2.38 -0.01 0.59 16 35 H 0.07 0.37 7.69 -2.39 -0.02 0.35 16 36 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.12 0.39 4.72 -2.39 -0.01 0.38 16 39 H 0.09 0.60 6.90 -2.39 -0.02 0.58 16 40 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 42 H 0.07 1.18 6.61 -2.39 -0.02 1.17 16 43 H 0.08 1.59 6.44 -2.39 -0.02 1.57 16 44 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 46 H 0.37 17.30 5.48 -92.71 -0.51 16.79 16 47 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 48 H 0.07 1.57 7.75 -2.39 -0.02 1.55 16 49 H 0.10 1.52 7.83 -2.39 -0.02 1.50 16 50 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 51 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 52 H 0.08 1.20 6.80 -2.39 -0.02 1.18 16 53 H 0.07 1.58 7.00 -2.39 -0.02 1.56 16 Total: -1.00 -82.75 399.98 2.17 -80.58 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.33 Total: 21.23 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 6.51 Total: 2.58 kcal Atomic # 7 Polarization: -109.67 SS G_CDS: -3.96 Total: -113.62 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -2.62 Total: -39.48 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 1.90 Total: 48.72 kcal Total: -82.75 2.17 -80.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276912934.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.246 kcal (2) G-P(sol) polarization free energy of solvation -82.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds