Wall clock time and date at job start Sat Apr 11 2020 06:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47049 * 2 1 4 4 H 1.08992 * 109.47365 * 54.73683 * 3 2 1 5 5 O 1.42902 * 109.47275 * 294.73127 * 3 2 1 6 6 C 1.42898 * 113.99945 * 151.12957 * 5 3 2 7 7 C 1.54271 * 110.03156 * 270.07265 * 6 5 3 8 8 C 1.54955 * 104.15857 * 217.13665 * 7 6 5 9 9 C 1.54887 * 102.78287 * 37.89057 * 8 7 6 10 10 C 1.53877 * 110.03021 * 152.85613 * 6 5 3 11 11 C 1.50703 * 109.46975 * 174.73527 * 3 2 1 12 12 O 1.21284 * 120.00278 * 114.99933 * 11 3 2 13 13 N 1.34782 * 119.99824 * 294.99775 * 11 3 2 14 14 C 1.46496 * 120.00126 * 179.72363 * 13 11 3 15 15 C 1.52994 * 109.47560 * 180.02562 * 14 13 11 16 16 O 1.42903 * 110.88486 * 297.57516 * 15 14 13 17 17 C 1.55151 * 111.00850 * 173.65333 * 15 14 13 18 18 C 1.54321 * 102.94088 * 206.42286 * 17 15 14 19 19 N 1.47020 * 107.27541 * 22.19256 * 18 17 15 20 20 C 1.36935 * 125.65079 * 181.09242 * 19 18 17 21 21 H 1.07999 * 119.99932 * 179.97438 * 20 19 18 22 22 C 1.38810 * 120.00015 * 359.95798 * 20 19 18 23 23 N 1.31625 * 120.00059 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99938 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47002 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46675 * 120.00256 * 24 22 20 27 27 H 1.48495 * 109.47385 * 239.99880 * 24 22 20 28 28 C 1.47423 * 108.69914 * 1.05936 * 19 18 17 29 29 H 1.09003 * 109.47204 * 185.28901 * 1 2 3 30 30 H 1.09003 * 109.46644 * 305.28204 * 1 2 3 31 31 H 1.08995 * 109.47469 * 65.27858 * 1 2 3 32 32 H 1.09007 * 109.46904 * 240.00107 * 2 1 3 33 33 H 1.08996 * 109.47273 * 120.00671 * 2 1 3 34 34 H 1.08995 * 110.01616 * 31.46378 * 6 5 3 35 35 H 1.09001 * 110.48241 * 335.78708 * 7 6 5 36 36 H 1.08995 * 110.48265 * 98.42695 * 7 6 5 37 37 H 1.09006 * 110.72437 * 279.57386 * 8 7 6 38 38 H 1.09004 * 110.76530 * 156.22204 * 8 7 6 39 39 H 1.08996 * 110.49045 * 203.40706 * 9 8 7 40 40 H 1.09000 * 110.60066 * 80.81280 * 9 8 7 41 41 H 1.08998 * 110.03124 * 238.56673 * 10 6 5 42 42 H 1.08997 * 110.03200 * 359.95252 * 10 6 5 43 43 H 0.97001 * 119.99538 * 0.02562 * 13 11 3 44 44 H 1.08999 * 109.47057 * 300.00761 * 14 13 11 45 45 H 1.09003 * 109.47282 * 60.00071 * 14 13 11 46 46 H 0.96700 * 113.99876 * 59.29991 * 16 15 14 47 47 H 1.08999 * 110.72007 * 324.78535 * 17 15 14 48 48 H 1.09001 * 110.72166 * 88.06202 * 17 15 14 49 49 H 1.09003 * 109.88533 * 262.77186 * 18 17 15 50 50 H 1.09011 * 109.88154 * 141.61163 * 18 17 15 51 51 H 0.96997 * 119.99740 * 179.97438 * 23 22 20 52 52 H 1.09003 * 110.36576 * 217.03374 * 28 19 18 53 53 H 1.08996 * 110.37269 * 94.71383 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6017 1.9828 0.8390 5 8 1.6673 2.0795 -1.2237 6 6 1.4856 3.4924 -1.1116 7 6 0.0199 3.8096 -0.7492 8 6 -0.2961 5.1015 -1.5444 9 6 0.4524 4.8729 -2.8810 10 6 1.7607 4.1684 -2.4663 11 6 3.5413 1.4445 0.1304 12 8 4.2285 1.8598 -0.7786 13 7 4.1205 0.9847 1.2572 14 6 5.5802 0.9809 1.3816 15 6 5.9743 0.4130 2.7465 16 8 5.4720 1.2327 3.8037 17 6 7.5128 0.2443 2.8555 18 6 7.6635 -0.8938 3.8867 19 7 6.4014 -1.6479 3.8922 20 6 6.1195 -2.7264 4.6876 21 1 5.1582 -3.2134 4.6161 22 6 7.0694 -3.1937 5.5854 23 7 8.2409 -2.6000 5.6726 24 14 6.6845 -4.6644 6.6709 25 1 5.3100 -5.1466 6.3822 26 1 7.6581 -5.7514 6.3951 27 1 6.7799 -4.2649 8.0979 28 6 5.4894 -1.0502 2.9000 29 1 -0.3634 -1.0233 0.0947 30 1 -0.3633 0.5936 0.8389 31 1 -0.3634 0.4297 -0.9334 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.1539 3.8953 -0.3507 35 1 -0.6352 2.9976 -1.0647 36 1 -0.0785 3.9862 0.3218 37 1 0.0951 5.9779 -1.0277 38 1 -1.3685 5.1983 -1.7139 39 1 0.6688 5.8253 -3.3649 40 1 -0.1316 4.2337 -3.5432 41 1 2.5620 4.9000 -2.3626 42 1 2.0337 3.4188 -3.2090 43 1 3.5709 0.6522 1.9841 44 1 6.0104 0.3632 0.5934 45 1 5.9553 2.0003 1.2898 46 1 4.5095 1.3263 3.8054 47 1 7.9379 -0.0468 1.8949 48 1 7.9762 1.1604 3.2218 49 1 7.8497 -0.4756 4.8759 50 1 8.4856 -1.5490 3.5982 51 1 8.9044 -2.9264 6.3003 52 1 4.4629 -1.0732 3.2661 53 1 5.5656 -1.5769 1.9488 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278811308.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:17 Heat of formation + Delta-G solvation = -145.611118 kcal Electronic energy + Delta-G solvation = -31070.577824 eV Core-core repulsion = 26941.301393 eV Total energy + Delta-G solvation = -4129.276431 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.42018 -40.27555 -39.33681 -37.13500 -36.74982 -35.44485 -34.20442 -33.91178 -31.45061 -30.08273 -29.63453 -28.90091 -27.98143 -27.02942 -25.10724 -23.11659 -22.26989 -21.71189 -21.44790 -21.31144 -21.19477 -19.10000 -18.78601 -18.25658 -17.54561 -16.87213 -16.72813 -16.69465 -16.33282 -15.85952 -15.77817 -15.64787 -15.15481 -15.13117 -14.87404 -14.67038 -14.32843 -14.24699 -13.90833 -13.69929 -13.45752 -13.25569 -13.22306 -12.93216 -12.87583 -12.79779 -12.71366 -12.36282 -12.10106 -12.03685 -12.00993 -11.97603 -11.93161 -11.82970 -11.80176 -11.73320 -11.51715 -11.45434 -11.27037 -10.94191 -10.69664 -10.23913 -10.20291 -8.88993 -7.84627 -5.20165 1.46441 1.47571 1.50542 1.57660 1.96062 2.49205 2.67063 3.16731 3.34099 3.44969 3.56927 3.62718 3.66950 3.72471 3.88974 3.92129 3.96311 3.98437 4.02771 4.27167 4.39878 4.46353 4.53112 4.53531 4.57673 4.60441 4.66391 4.71840 4.80148 4.80811 4.87601 4.92195 4.94655 4.95024 5.04249 5.07221 5.09431 5.13456 5.21179 5.24533 5.28085 5.29658 5.43629 5.44828 5.47303 5.63024 5.75880 6.13829 6.18882 6.46209 6.81996 7.09287 7.14723 7.76780 8.40831 9.26369 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020720 B = 0.002293 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.027518 B =12206.488652 C =12983.084842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C 0.080 3.920 4 H 0.113 0.887 5 O -0.363 6.363 6 C 0.079 3.921 7 C -0.143 4.143 8 C -0.120 4.120 9 C -0.120 4.120 10 C -0.124 4.124 11 C 0.487 3.513 12 O -0.570 6.570 13 N -0.713 5.713 14 C 0.119 3.881 15 C 0.123 3.877 16 O -0.552 6.552 17 C -0.122 4.122 18 C 0.190 3.810 19 N -0.621 5.621 20 C -0.238 4.238 21 H 0.088 0.912 22 C -0.071 4.071 23 N -0.953 5.953 24 Si 0.979 3.021 25 H -0.261 1.261 26 H -0.295 1.295 27 H -0.294 1.294 28 C 0.113 3.887 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.412 0.588 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.383 0.617 47 H 0.092 0.908 48 H 0.081 0.919 49 H 0.008 0.992 50 H 0.008 0.992 51 H 0.245 0.755 52 H 0.059 0.941 53 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.148 14.108 -13.560 28.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C 0.019 3.981 4 H 0.130 0.870 5 O -0.280 6.280 6 C 0.021 3.979 7 C -0.180 4.180 8 C -0.158 4.158 9 C -0.157 4.157 10 C -0.162 4.162 11 C 0.274 3.726 12 O -0.449 6.449 13 N -0.368 5.368 14 C -0.006 4.006 15 C 0.081 3.919 16 O -0.359 6.359 17 C -0.161 4.161 18 C 0.065 3.935 19 N -0.347 5.347 20 C -0.367 4.367 21 H 0.106 0.894 22 C -0.264 4.264 23 N -0.603 5.603 24 Si 0.808 3.192 25 H -0.185 1.185 26 H -0.222 1.222 27 H -0.222 1.222 28 C -0.012 4.012 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.114 0.886 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.249 0.751 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.232 0.768 47 H 0.111 0.889 48 H 0.100 0.900 49 H 0.026 0.974 50 H 0.026 0.974 51 H 0.055 0.945 52 H 0.077 0.923 53 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -18.975 14.231 -14.106 27.597 hybrid contribution 0.095 -1.035 1.122 1.529 sum -18.880 13.197 -12.985 26.443 Atomic orbital electron populations 1.21687 0.93015 1.02721 1.02594 1.21629 0.98469 0.91624 1.03637 1.22253 0.88258 0.97599 0.90008 0.86957 1.88054 1.87770 1.20952 1.31251 1.23001 0.96599 0.80339 0.97944 1.22928 0.95115 0.98986 1.01013 1.22458 1.01018 0.97044 0.95265 1.22339 0.95024 1.00467 0.97909 1.22190 0.98899 0.99009 0.96070 1.22050 0.92565 0.76524 0.81466 1.90696 1.66028 1.47707 1.40437 1.45913 1.07297 1.64661 1.18923 1.21708 0.80991 1.01773 0.96079 1.22369 0.95065 0.89227 0.85226 1.86619 1.27108 1.70401 1.51738 1.22796 0.93351 0.99429 1.00505 1.20824 0.87864 0.89976 0.94864 1.44644 1.13117 1.33644 1.43294 1.19512 0.99565 1.04415 1.13173 0.89442 1.25699 0.96327 1.02640 1.01688 1.70208 1.06618 1.43482 1.39942 0.84991 0.77828 0.78487 0.77910 1.18527 1.22203 1.22152 1.22351 0.94459 0.91967 0.92454 0.91517 0.91216 0.92659 0.92078 0.88618 0.92879 0.90285 0.90290 0.90884 0.89976 0.90559 0.91353 0.91453 0.92147 0.75127 0.90944 0.90766 0.76780 0.88938 0.90006 0.97365 0.97377 0.94530 0.92314 0.94929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.76 71.98 0.70 -1.00 16 2 C -0.12 -1.76 5.61 30.59 0.17 -1.59 16 3 C 0.08 1.43 2.34 29.85 0.07 1.50 16 4 H 0.11 1.38 7.84 -2.39 -0.02 1.36 16 5 O -0.36 -7.86 8.73 -129.99 -1.13 -8.99 16 6 C 0.08 1.43 3.14 31.32 0.10 1.53 16 7 C -0.14 -1.78 6.55 31.69 0.21 -1.57 16 8 C -0.12 -1.28 6.91 31.91 0.22 -1.06 16 9 C -0.12 -1.54 6.83 31.67 0.22 -1.32 16 10 C -0.12 -2.26 6.61 31.32 0.21 -2.05 16 11 C 0.49 11.82 7.08 87.66 0.62 12.44 16 12 O -0.57 -19.13 16.51 15.95 0.26 -18.86 16 13 N -0.71 -15.00 5.06 -463.06 -2.34 -17.34 16 14 C 0.12 3.13 4.90 86.38 0.42 3.55 16 15 C 0.12 3.88 0.95 -9.41 -0.01 3.87 16 16 O -0.55 -17.29 13.19 -148.98 -1.96 -19.26 16 17 C -0.12 -4.51 6.16 31.78 0.20 -4.31 16 18 C 0.19 9.53 5.37 86.73 0.47 9.99 16 19 N -0.62 -31.17 3.39 -691.99 -2.35 -33.52 16 20 C -0.24 -13.06 10.28 84.03 0.86 -12.20 16 21 H 0.09 4.50 7.83 -2.91 -0.02 4.48 16 22 C -0.07 -4.03 5.49 84.86 0.47 -3.57 16 23 N -0.95 -58.09 10.31 21.65 0.22 -57.86 16 24 Si 0.98 45.54 29.55 68.60 2.03 47.57 16 25 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 26 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 27 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 28 C 0.11 4.17 5.92 86.86 0.51 4.68 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.75 7.97 -2.39 -0.02 0.73 16 32 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.10 1.19 7.76 -2.39 -0.02 1.17 16 34 H 0.05 1.03 7.83 -2.39 -0.02 1.01 16 35 H 0.08 1.00 8.08 -2.39 -0.02 0.99 16 36 H 0.08 0.78 8.14 -2.39 -0.02 0.77 16 37 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 38 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 39 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.06 1.32 7.95 -2.39 -0.02 1.30 16 43 H 0.41 6.43 7.00 -92.71 -0.65 5.78 16 44 H 0.07 2.03 8.11 -2.39 -0.02 2.02 16 45 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.38 8.29 8.17 -74.06 -0.60 7.68 16 47 H 0.09 3.04 8.01 -2.39 -0.02 3.02 16 48 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 49 H 0.01 0.47 7.38 -2.39 -0.02 0.45 16 50 H 0.01 0.45 7.51 -2.38 -0.02 0.43 16 51 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 52 H 0.06 1.92 7.96 -2.39 -0.02 1.90 16 53 H 0.03 1.20 8.04 -2.39 -0.02 1.18 16 Total: -1.00 -76.25 417.25 -0.21 -76.46 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: -0.37 Total: 22.91 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 5.43 Total: 8.89 kcal Atomic # 7 Polarization: -104.25 SS G_CDS: -4.47 Total: -108.72 kcal Atomic # 8 Polarization: -44.27 SS G_CDS: -2.84 Total: -47.11 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -76.25 -0.21 -76.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278811308.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.150 kcal (2) G-P(sol) polarization free energy of solvation -76.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds