Wall clock time and date at job start Sat Apr 11 2020 06:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47180 * 2 1 4 4 H 1.08999 * 109.47182 * 56.05961 * 3 2 1 5 5 O 1.42903 * 109.47380 * 296.05629 * 3 2 1 6 6 C 1.42896 * 114.00158 * 151.98659 * 5 3 2 7 7 C 1.54266 * 110.03715 * 270.70302 * 6 5 3 8 8 C 1.54884 * 104.19906 * 217.10753 * 7 6 5 9 9 C 1.54885 * 102.75059 * 37.93770 * 8 7 6 10 10 C 1.53876 * 110.03284 * 153.53473 * 6 5 3 11 11 C 1.50697 * 109.47231 * 176.05488 * 3 2 1 12 12 O 1.21289 * 120.00055 * 115.00081 * 11 3 2 13 13 N 1.34777 * 120.00311 * 295.00394 * 11 3 2 14 14 C 1.46496 * 120.00120 * 179.97438 * 13 11 3 15 15 C 1.53005 * 109.47224 * 179.97438 * 14 13 11 16 16 O 1.42900 * 110.64033 * 61.85452 * 15 14 13 17 17 C 1.55155 * 110.71919 * 184.99699 * 15 14 13 18 18 C 1.54920 * 101.57949 * 153.86564 * 17 15 14 19 19 N 1.47424 * 104.83157 * 322.99081 * 18 17 15 20 20 C 1.36930 * 125.64876 * 204.09206 * 19 18 17 21 21 H 1.08011 * 120.00136 * 168.07351 * 20 19 18 22 22 C 1.38812 * 120.00333 * 348.07585 * 20 19 18 23 23 N 1.31621 * 119.99351 * 323.69598 * 22 20 19 24 24 Si 1.86792 * 120.00535 * 143.69142 * 22 20 19 25 25 H 1.48512 * 109.47020 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47127 * 119.99830 * 24 22 20 27 27 H 1.48494 * 109.47524 * 240.00175 * 24 22 20 28 28 C 1.47026 * 108.70053 * 24.35480 * 19 18 17 29 29 H 1.09000 * 109.47267 * 305.17385 * 1 2 3 30 30 H 1.09004 * 109.47019 * 65.17027 * 1 2 3 31 31 H 1.08992 * 109.47483 * 185.17089 * 1 2 3 32 32 H 1.09000 * 109.46839 * 240.00039 * 2 1 3 33 33 H 1.08999 * 109.46916 * 119.99984 * 2 1 3 34 34 H 1.09007 * 110.01702 * 32.14785 * 6 5 3 35 35 H 1.09002 * 110.48454 * 335.78371 * 7 6 5 36 36 H 1.09006 * 110.48456 * 98.42584 * 7 6 5 37 37 H 1.09008 * 110.75523 * 279.62771 * 8 7 6 38 38 H 1.08993 * 110.75954 * 156.25590 * 8 7 6 39 39 H 1.08997 * 110.49058 * 203.38359 * 9 8 7 40 40 H 1.09004 * 110.48519 * 80.73417 * 9 8 7 41 41 H 1.09002 * 110.03387 * 238.57014 * 10 6 5 42 42 H 1.09001 * 110.02743 * 359.95413 * 10 6 5 43 43 H 0.96997 * 119.99510 * 359.97438 * 13 11 3 44 44 H 1.08998 * 109.47842 * 59.99729 * 14 13 11 45 45 H 1.09004 * 109.47216 * 299.99614 * 14 13 11 46 46 H 0.96696 * 114.00142 * 303.14459 * 16 15 14 47 47 H 1.08994 * 111.00430 * 35.79520 * 17 15 14 48 48 H 1.08997 * 111.00489 * 271.93670 * 17 15 14 49 49 H 1.08996 * 110.36794 * 204.15230 * 18 17 15 50 50 H 1.08999 * 110.36356 * 81.82625 * 18 17 15 51 51 H 0.96993 * 120.00307 * 354.35070 * 23 22 20 52 52 H 1.09010 * 109.87979 * 118.13563 * 28 19 18 53 53 H 1.09003 * 109.88391 * 239.28949 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6201 1.9763 0.8526 5 8 1.6408 2.0889 -1.2103 6 6 1.4805 3.5036 -1.0882 7 6 0.0342 3.8372 -0.6677 8 6 -0.2979 5.1346 -1.4458 9 6 0.3935 4.9005 -2.8118 10 6 1.7089 4.1797 -2.4515 11 6 3.5438 1.4436 0.0978 12 8 4.2110 1.8661 -0.8228 13 7 4.1473 0.9752 1.2080 14 6 5.6092 0.9758 1.3028 15 6 6.0330 0.3973 2.6544 16 8 5.5976 -0.9579 2.7811 17 6 7.5703 0.4994 2.8375 18 6 7.6977 0.5374 4.3810 19 7 6.5421 1.3318 4.8357 20 6 6.4625 2.0216 6.0159 21 1 5.6599 2.7264 6.1765 22 6 7.4132 1.8152 7.0060 23 7 7.9090 0.6117 7.2015 24 14 7.9892 3.2452 8.0607 25 1 7.2832 4.4836 7.6439 26 1 7.6887 2.9609 9.4869 27 1 9.4529 3.4282 7.8902 28 6 5.4867 1.2557 3.8148 29 1 -0.3634 0.5920 0.8400 30 1 -0.3633 0.4316 -0.9327 31 1 -0.3634 -1.0234 0.0926 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.1837 3.8968 -0.3539 35 1 -0.6426 3.0340 -0.9589 36 1 -0.0199 4.0123 0.4069 37 1 0.1242 6.0051 -0.9434 38 1 -1.3749 5.2445 -1.5718 39 1 0.6016 5.8515 -3.3021 40 1 -0.2253 4.2688 -3.4493 41 1 2.5224 4.9015 -2.3786 42 1 1.9429 3.4287 -3.2060 43 1 3.6137 0.6377 1.9444 44 1 5.9788 1.9973 1.2133 45 1 6.0256 0.3671 0.5001 46 1 4.6438 -1.0761 2.6748 47 1 7.9569 1.4155 2.3910 48 1 8.0719 -0.3762 2.4256 49 1 8.6295 1.0219 4.6729 50 1 7.6492 -0.4715 4.7906 51 1 7.5522 -0.1454 6.7113 52 1 4.5962 0.7892 4.2364 53 1 5.2478 2.2558 3.4532 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278811309.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:21 Heat of formation + Delta-G solvation = -150.299088 kcal Electronic energy + Delta-G solvation = -31141.680986 eV Core-core repulsion = 27012.201269 eV Total energy + Delta-G solvation = -4129.479716 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.50726 -40.42950 -39.40969 -37.21630 -36.98834 -35.52213 -34.31815 -34.02448 -31.39411 -30.25780 -29.67115 -28.95775 -28.00100 -26.91164 -25.17835 -23.13945 -22.42426 -21.77311 -21.50530 -21.35503 -21.28033 -19.57947 -19.06597 -18.32408 -17.72487 -16.98076 -16.76716 -16.53493 -16.33052 -15.81358 -15.71809 -15.65424 -15.35027 -15.13144 -15.01713 -14.89668 -14.62700 -14.45788 -14.28141 -13.68472 -13.46454 -13.40047 -13.27961 -12.92869 -12.75997 -12.75030 -12.57807 -12.53375 -12.28666 -12.07507 -12.03869 -11.96090 -11.94608 -11.88878 -11.85806 -11.72656 -11.54560 -11.49435 -11.32120 -11.11336 -10.45497 -10.29242 -10.27692 -9.07946 -8.43967 -5.29584 1.45252 1.57116 1.63692 1.81537 1.88657 2.60432 2.62364 3.00072 3.12371 3.27522 3.49218 3.57342 3.61193 3.66546 3.72846 3.78715 3.85940 3.93814 3.99251 4.23970 4.32177 4.35590 4.37714 4.50093 4.50146 4.54834 4.58956 4.67034 4.68967 4.77217 4.77359 4.82229 4.85194 4.90918 4.91375 5.00985 5.03417 5.06555 5.09798 5.18467 5.20433 5.22563 5.23295 5.25955 5.41451 5.44663 5.64703 6.07945 6.25505 6.38834 6.67505 6.82999 7.08039 7.67086 8.26014 8.90594 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013959 B = 0.002494 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.334349 B =11222.887867 C =12049.412720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C 0.078 3.922 4 H 0.106 0.894 5 O -0.360 6.360 6 C 0.078 3.922 7 C -0.143 4.143 8 C -0.121 4.121 9 C -0.119 4.119 10 C -0.123 4.123 11 C 0.488 3.512 12 O -0.569 6.569 13 N -0.715 5.715 14 C 0.119 3.881 15 C 0.127 3.873 16 O -0.553 6.553 17 C -0.111 4.111 18 C 0.151 3.849 19 N -0.620 5.620 20 C -0.357 4.357 21 H 0.062 0.938 22 C -0.072 4.072 23 N -0.930 5.930 24 Si 1.111 2.889 25 H -0.273 1.273 26 H -0.291 1.291 27 H -0.288 1.288 28 C 0.114 3.886 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.048 0.952 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.411 0.589 44 H 0.070 0.930 45 H 0.080 0.920 46 H 0.386 0.614 47 H 0.095 0.905 48 H 0.094 0.906 49 H 0.023 0.977 50 H 0.002 0.998 51 H 0.254 0.746 52 H 0.030 0.970 53 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.727 3.196 -18.654 26.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C 0.016 3.984 4 H 0.123 0.877 5 O -0.277 6.277 6 C 0.021 3.979 7 C -0.181 4.181 8 C -0.159 4.159 9 C -0.156 4.156 10 C -0.161 4.161 11 C 0.275 3.725 12 O -0.447 6.447 13 N -0.370 5.370 14 C -0.006 4.006 15 C 0.086 3.914 16 O -0.360 6.360 17 C -0.149 4.149 18 C 0.026 3.974 19 N -0.347 5.347 20 C -0.485 4.485 21 H 0.080 0.920 22 C -0.270 4.270 23 N -0.571 5.571 24 Si 0.936 3.064 25 H -0.198 1.198 26 H -0.218 1.218 27 H -0.214 1.214 28 C -0.012 4.012 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.118 0.882 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.248 0.752 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.235 0.765 47 H 0.114 0.886 48 H 0.113 0.887 49 H 0.042 0.958 50 H 0.020 0.980 51 H 0.064 0.936 52 H 0.048 0.952 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -16.634 3.819 -18.145 24.910 hybrid contribution -1.313 -0.602 -0.378 1.493 sum -17.947 3.217 -18.522 25.991 Atomic orbital electron populations 1.21689 0.93175 1.02813 1.02456 1.21627 0.98361 0.91137 1.03930 1.22279 0.88030 0.97874 0.90193 0.87660 1.88039 1.87038 1.20451 1.32218 1.22986 0.96647 0.80393 0.97889 1.22915 0.95387 0.99066 1.00716 1.22449 1.01323 0.96855 0.95234 1.22336 0.95078 1.00430 0.97759 1.22181 0.98964 0.98991 0.95925 1.22054 0.92474 0.76502 0.81507 1.90699 1.67322 1.47377 1.39277 1.45914 1.07146 1.64652 1.19275 1.21746 0.80895 1.01639 0.96290 1.22176 0.95608 0.81941 0.91709 1.86603 1.29218 1.25150 1.95073 1.22754 0.93126 1.03548 0.95498 1.21352 0.90368 0.93156 0.92550 1.44792 1.12688 1.58924 1.18317 1.19906 1.15635 1.18594 0.94359 0.92048 1.27020 0.98766 1.02272 0.98917 1.70854 1.48100 0.98835 1.39338 0.82956 0.76229 0.73089 0.74170 1.19750 1.21762 1.21427 1.22111 0.91800 0.97549 0.89697 0.91655 0.92734 0.91125 0.91633 0.88156 0.93423 0.90008 0.90725 0.91146 0.89825 0.90515 0.91066 0.91607 0.91819 0.75208 0.91151 0.90198 0.76462 0.88645 0.88704 0.95832 0.98042 0.93649 0.95245 0.94427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.74 71.98 0.70 -0.90 16 2 C -0.11 -1.55 5.61 30.59 0.17 -1.38 16 3 C 0.08 1.42 2.35 29.85 0.07 1.49 16 4 H 0.11 1.51 7.84 -2.39 -0.02 1.49 16 5 O -0.36 -7.93 8.68 -129.99 -1.13 -9.06 16 6 C 0.08 1.53 3.12 31.32 0.10 1.63 16 7 C -0.14 -2.00 6.52 31.67 0.21 -1.80 16 8 C -0.12 -1.45 6.91 31.88 0.22 -1.23 16 9 C -0.12 -1.61 6.83 31.67 0.22 -1.39 16 10 C -0.12 -2.34 6.61 31.32 0.21 -2.14 16 11 C 0.49 11.98 7.04 87.66 0.62 12.60 16 12 O -0.57 -19.14 16.49 15.93 0.26 -18.87 16 13 N -0.71 -15.28 5.04 -463.05 -2.33 -17.61 16 14 C 0.12 3.11 4.74 86.38 0.41 3.52 16 15 C 0.13 3.93 0.93 -9.60 -0.01 3.92 16 16 O -0.55 -16.29 13.10 -148.98 -1.95 -18.24 16 17 C -0.11 -3.87 6.26 31.99 0.20 -3.67 16 18 C 0.15 7.20 5.39 86.86 0.47 7.67 16 19 N -0.62 -31.25 3.33 -691.94 -2.30 -33.55 16 20 C -0.36 -20.21 9.94 84.03 0.83 -19.37 16 21 H 0.06 3.45 8.04 -2.90 -0.02 3.43 16 22 C -0.07 -4.17 4.91 84.86 0.42 -3.75 16 23 N -0.93 -57.53 12.91 21.65 0.28 -57.25 16 24 Si 1.11 51.25 30.04 68.60 2.06 53.31 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 27 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 28 C 0.11 4.36 6.04 86.73 0.52 4.88 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.72 7.93 -2.38 -0.02 0.70 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.10 0.96 7.80 -2.39 -0.02 0.94 16 34 H 0.05 1.04 7.82 -2.38 -0.02 1.03 16 35 H 0.08 1.11 8.08 -2.39 -0.02 1.09 16 36 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 41 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.06 1.40 7.95 -2.39 -0.02 1.38 16 43 H 0.41 6.65 7.09 -92.71 -0.66 5.99 16 44 H 0.07 2.02 8.13 -2.39 -0.02 2.00 16 45 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 46 H 0.39 7.75 8.05 -74.06 -0.60 7.15 16 47 H 0.10 3.06 8.04 -2.39 -0.02 3.04 16 48 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 49 H 0.02 1.23 7.87 -2.39 -0.02 1.21 16 50 H 0.00 0.09 7.11 -2.39 -0.02 0.08 16 51 H 0.25 16.13 6.68 -92.71 -0.62 15.51 16 52 H 0.03 1.11 8.07 -2.38 -0.02 1.09 16 53 H 0.04 1.42 7.82 -2.39 -0.02 1.40 16 Total: -1.00 -76.55 417.71 0.03 -76.52 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: -0.21 Total: 24.66 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 5.35 Total: 0.09 kcal Atomic # 7 Polarization: -104.05 SS G_CDS: -4.35 Total: -108.41 kcal Atomic # 8 Polarization: -43.35 SS G_CDS: -2.82 Total: -46.17 kcal Atomic # 14 Polarization: 51.25 SS G_CDS: 2.06 Total: 53.31 kcal Total: -76.55 0.03 -76.52 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278811309.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.777 kcal (2) G-P(sol) polarization free energy of solvation -76.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds