Wall clock time and date at job start Sat Apr 11 2020 06:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47396 * 2 1 4 4 N 1.46496 * 109.47095 * 180.02562 * 3 2 1 5 5 C 1.46504 * 119.99698 * 270.00126 * 4 3 2 6 6 C 1.53007 * 109.46888 * 277.57018 * 5 4 3 7 7 C 1.53001 * 109.46850 * 180.41794 * 6 5 4 8 8 C 1.53003 * 109.46953 * 300.41927 * 6 5 4 9 9 O 1.42901 * 109.46838 * 60.42042 * 6 5 4 10 10 C 1.34775 * 120.00340 * 90.00070 * 4 3 2 11 11 O 1.21342 * 120.00379 * 184.31880 * 10 4 3 12 12 C 1.49450 * 119.99752 * 4.31594 * 10 4 3 13 13 O 1.21356 * 120.00237 * 283.05851 * 12 10 4 14 14 N 1.34776 * 120.00276 * 103.05232 * 12 10 4 15 15 C 1.46929 * 120.62799 * 355.77769 * 14 12 10 16 16 C 1.53185 * 108.78131 * 126.40669 * 15 14 12 17 17 C 1.53041 * 109.31057 * 54.63277 * 16 15 14 18 18 C 1.53039 * 109.54071 * 298.63639 * 17 16 15 19 19 H 1.08997 * 109.52275 * 301.40067 * 18 17 16 20 20 C 1.50701 * 109.49816 * 181.31545 * 18 17 16 21 21 H 1.07993 * 120.00200 * 0.16587 * 20 18 17 22 22 C 1.37879 * 119.99860 * 180.43932 * 20 18 17 23 23 N 1.31515 * 119.99795 * 359.72032 * 22 20 18 24 24 Si 1.86800 * 120.00088 * 179.72528 * 22 20 18 25 25 H 1.48503 * 109.46872 * 89.99974 * 24 22 20 26 26 H 1.48497 * 109.46978 * 209.99611 * 24 22 20 27 27 H 1.48494 * 109.46853 * 329.99931 * 24 22 20 28 28 C 1.46923 * 120.63521 * 175.78963 * 14 12 10 29 29 H 1.09000 * 109.46698 * 299.99991 * 1 2 3 30 30 H 1.08998 * 109.47260 * 59.99748 * 1 2 3 31 31 H 1.09004 * 109.47522 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46698 * 240.00009 * 2 1 3 33 33 H 1.09002 * 109.46789 * 120.00146 * 2 1 3 34 34 H 1.09004 * 109.46812 * 59.99670 * 3 2 1 35 35 H 1.08998 * 109.47121 * 300.00337 * 3 2 1 36 36 H 1.08992 * 109.47665 * 37.57090 * 5 4 3 37 37 H 1.08997 * 109.46950 * 157.57765 * 5 4 3 38 38 H 1.08997 * 109.47066 * 60.00449 * 7 6 5 39 39 H 1.09005 * 109.46845 * 180.02562 * 7 6 5 40 40 H 1.08998 * 109.47298 * 300.00152 * 7 6 5 41 41 H 1.08991 * 109.47063 * 68.23567 * 8 6 5 42 42 H 1.09006 * 109.46344 * 188.22968 * 8 6 5 43 43 H 1.08991 * 109.47443 * 308.22662 * 8 6 5 44 44 H 0.96696 * 114.00201 * 60.00231 * 9 6 5 45 45 H 1.09002 * 109.58349 * 246.19645 * 15 14 12 46 46 H 1.09006 * 109.58810 * 6.61788 * 15 14 12 47 47 H 1.08999 * 109.50407 * 174.58250 * 16 15 14 48 48 H 1.08996 * 109.50257 * 294.68564 * 16 15 14 49 49 H 1.08999 * 109.46342 * 178.61634 * 17 16 15 50 50 H 1.09005 * 109.46083 * 58.65880 * 17 16 15 51 51 H 0.97003 * 119.99613 * 180.02562 * 23 22 20 52 52 H 1.09005 * 109.58329 * 113.80494 * 28 14 12 53 53 H 1.08998 * 109.70195 * 353.45125 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.2380 1.4421 1.2679 6 6 4.3287 2.8720 1.8047 7 6 5.1032 2.8732 3.1242 8 6 5.0543 3.7540 0.7866 9 8 3.0123 3.3826 2.0247 10 6 4.1785 1.4425 -1.1680 11 8 5.3893 1.3633 -1.1701 12 6 3.4339 1.5402 -2.4602 13 8 2.8595 0.5679 -2.9045 14 7 3.4002 2.7081 -3.1320 15 6 4.0117 3.9169 -2.5630 16 6 4.9913 4.5019 -3.5850 17 6 4.2625 4.7308 -4.9111 18 6 3.7450 3.3945 -5.4481 19 1 4.5809 2.7084 -5.5845 20 6 3.0556 3.6165 -6.7697 21 1 2.9950 4.6108 -7.1868 22 6 2.4974 2.5510 -7.4436 23 7 2.5714 1.3401 -6.9357 24 14 1.6362 2.8272 -9.0781 25 1 2.6181 2.6920 -10.1839 26 1 0.5590 1.8191 -9.2466 27 1 1.0471 4.1901 -9.1029 28 6 2.7512 2.7968 -4.4471 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6768 1.9563 -0.8899 36 1 3.7147 0.8155 1.9899 37 1 5.2423 1.0501 1.1071 38 1 6.1073 2.4838 2.9565 39 1 5.1674 3.8918 3.5069 40 1 4.5863 2.2448 3.8495 41 1 4.4324 3.8717 -0.1006 42 1 5.2486 4.7322 1.2266 43 1 5.9989 3.2865 0.5088 44 1 2.4933 2.8714 2.6606 45 1 3.2353 4.6489 -2.3404 46 1 4.5473 3.6599 -1.6490 47 1 5.3798 5.4507 -3.2150 48 1 5.8158 3.8058 -3.7386 49 1 4.9511 5.1700 -5.6329 50 1 3.4231 5.4078 -4.7520 51 1 2.1790 0.5904 -7.4100 52 1 1.8720 3.4376 -4.3781 53 1 2.4532 1.8019 -4.7777 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327332858.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:09:29 Heat of formation + Delta-G solvation = -152.145691 kcal Electronic energy + Delta-G solvation = -32942.392577 eV Core-core repulsion = 28812.832786 eV Total energy + Delta-G solvation = -4129.559791 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.19424 -40.32713 -38.95912 -38.42728 -37.06143 -35.35456 -34.20750 -33.57753 -32.94546 -31.73523 -28.85730 -28.30611 -27.60815 -27.00132 -26.36484 -23.86705 -23.52630 -22.69247 -21.53730 -20.95500 -19.78552 -19.07507 -18.34685 -18.20636 -17.75476 -17.10380 -16.64246 -16.47824 -16.10908 -15.81029 -15.73927 -15.51000 -15.32851 -15.04822 -14.98446 -14.54328 -14.45956 -14.26166 -13.90959 -13.75038 -13.45751 -13.39641 -13.28323 -13.08158 -12.89730 -12.84795 -12.82524 -12.54564 -12.52956 -12.47663 -12.33487 -12.28372 -12.21382 -11.91722 -11.75944 -11.68401 -11.62952 -11.23578 -11.09274 -10.97221 -10.58077 -10.49268 -9.72567 -9.63344 -8.12459 -6.29775 0.88219 1.17263 1.41395 1.42132 1.53284 1.55545 2.31930 2.42587 3.09306 3.17020 3.34070 3.73087 3.80325 3.82134 3.93406 4.01589 4.05462 4.07740 4.22582 4.33254 4.44065 4.45998 4.47649 4.59876 4.65035 4.66863 4.69110 4.74255 4.77451 4.87864 4.89049 4.96399 5.00349 5.06605 5.09686 5.13657 5.18255 5.19950 5.26004 5.30133 5.31534 5.35441 5.42484 5.45877 5.56055 5.83127 5.91452 5.93288 6.26344 6.32132 6.65750 6.79978 6.88915 6.95388 7.40634 8.91515 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014892 B = 0.003626 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.699704 B = 7720.269745 C = 8831.145197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.142 4.142 3 C 0.110 3.890 4 N -0.574 5.574 5 C 0.079 3.921 6 C 0.121 3.879 7 C -0.168 4.168 8 C -0.151 4.151 9 O -0.564 6.564 10 C 0.524 3.476 11 O -0.543 6.543 12 C 0.495 3.505 13 O -0.557 6.557 14 N -0.586 5.586 15 C 0.096 3.904 16 C -0.127 4.127 17 C -0.103 4.103 18 C 0.036 3.964 19 H -0.017 1.017 20 C -0.534 4.534 21 H 0.066 0.934 22 C 0.010 3.990 23 N -0.917 5.917 24 Si 0.961 3.039 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.259 1.259 28 C 0.126 3.874 29 H 0.083 0.917 30 H 0.037 0.963 31 H 0.060 0.940 32 H 0.033 0.967 33 H 0.086 0.914 34 H 0.130 0.870 35 H 0.050 0.950 36 H 0.118 0.882 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.048 0.952 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.390 0.610 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.106 0.894 48 H 0.044 0.956 49 H 0.056 0.944 50 H 0.065 0.935 51 H 0.260 0.740 52 H 0.051 0.949 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.421 4.570 24.942 25.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.181 4.181 3 C -0.012 4.012 4 N -0.306 5.306 5 C -0.043 4.043 6 C 0.080 3.920 7 C -0.226 4.226 8 C -0.208 4.208 9 O -0.373 6.373 10 C 0.306 3.694 11 O -0.421 6.421 12 C 0.278 3.722 13 O -0.435 6.435 14 N -0.318 5.318 15 C -0.025 4.025 16 C -0.164 4.164 17 C -0.141 4.141 18 C 0.017 3.983 19 H 0.001 0.999 20 C -0.572 4.572 21 H 0.084 0.916 22 C -0.190 4.190 23 N -0.555 5.555 24 Si 0.786 3.214 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.183 1.183 28 C 0.004 3.996 29 H 0.102 0.898 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.105 0.895 34 H 0.148 0.852 35 H 0.068 0.932 36 H 0.136 0.864 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.067 0.933 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.240 0.760 45 H 0.110 0.890 46 H 0.109 0.891 47 H 0.124 0.876 48 H 0.063 0.937 49 H 0.075 0.925 50 H 0.084 0.916 51 H 0.069 0.931 52 H 0.069 0.931 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.057 4.296 24.252 24.629 hybrid contribution -0.418 -0.987 -1.324 1.703 sum -0.361 3.309 22.928 23.168 Atomic orbital electron populations 1.21634 0.93659 1.02434 1.02299 1.21954 0.97605 0.96357 1.02178 1.21946 0.77062 0.97710 1.04448 1.47834 1.08012 1.70194 1.04545 1.22652 0.99010 0.98689 0.83914 1.21514 0.83910 0.91239 0.95371 1.22359 1.01039 1.03679 0.95511 1.21974 0.99750 1.00475 0.98606 1.86609 1.25829 1.57626 1.67192 1.20107 0.87352 0.76843 0.85087 1.90727 1.13807 1.50685 1.86862 1.20696 0.80938 0.83961 0.86607 1.90767 1.45543 1.37338 1.69858 1.48545 1.54421 1.08772 1.20087 1.22254 0.97104 0.86253 0.96930 1.21900 0.97358 1.01686 0.95501 1.21516 0.99442 0.97411 0.95687 1.18938 0.93317 0.92952 0.93121 0.99875 1.21480 1.36483 0.94361 1.04871 0.91567 1.25918 0.96819 0.94822 1.01395 1.70082 1.45680 0.99828 1.39957 0.85513 0.78076 0.78300 0.79535 1.20325 1.21289 1.18346 1.21903 0.95196 1.03395 0.79076 0.89765 0.94388 0.92061 0.94757 0.89543 0.85233 0.93162 0.86403 0.89462 0.91314 0.91208 0.89901 0.93292 0.90899 0.91676 0.75962 0.89022 0.89081 0.87560 0.93749 0.92478 0.91628 0.93065 0.93067 0.90044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.91 71.98 0.71 -2.01 16 2 C -0.14 -3.21 6.26 30.60 0.19 -3.02 16 3 C 0.11 2.47 5.03 86.38 0.43 2.90 16 4 N -0.57 -14.50 2.12 -823.41 -1.74 -16.24 16 5 C 0.08 1.35 4.79 86.38 0.41 1.77 16 6 C 0.12 1.78 1.17 -10.79 -0.01 1.76 16 7 C -0.17 -1.57 8.81 71.98 0.63 -0.94 16 8 C -0.15 -3.04 7.68 71.98 0.55 -2.48 16 9 O -0.56 -7.51 11.15 -148.98 -1.66 -9.17 16 10 C 0.52 18.85 4.62 87.27 0.40 19.25 16 11 O -0.54 -21.56 15.64 -3.22 -0.05 -21.61 16 12 C 0.50 21.90 5.61 87.27 0.49 22.39 16 13 O -0.56 -28.96 15.53 -3.26 -0.05 -29.01 16 14 N -0.59 -25.14 2.97 -820.47 -2.44 -27.57 16 15 C 0.10 3.19 6.25 86.36 0.54 3.73 16 16 C -0.13 -4.23 6.08 30.67 0.19 -4.05 16 17 C -0.10 -4.10 5.11 30.62 0.16 -3.95 16 18 C 0.04 1.86 2.25 -11.46 -0.03 1.83 16 19 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 20 C -0.53 -29.47 8.57 25.60 0.22 -29.25 16 21 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 22 C 0.01 0.55 5.30 84.66 0.45 1.00 16 23 N -0.92 -56.11 11.38 21.45 0.24 -55.87 16 24 Si 0.96 44.29 29.54 68.60 2.03 46.31 16 25 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 26 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 27 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 28 C 0.13 6.36 5.38 86.36 0.46 6.82 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.03 1.10 7.13 -2.39 -0.02 1.08 16 33 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.13 1.86 6.16 -2.39 -0.01 1.84 16 35 H 0.05 1.45 6.79 -2.39 -0.02 1.43 16 36 H 0.12 1.16 8.12 -2.39 -0.02 1.14 16 37 H 0.09 1.79 7.16 -2.39 -0.02 1.78 16 38 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 40 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.05 1.18 4.41 -2.39 -0.01 1.17 16 42 H 0.07 1.27 8.13 -2.38 -0.02 1.25 16 43 H 0.06 1.45 7.78 -2.39 -0.02 1.44 16 44 H 0.39 1.78 8.69 -74.06 -0.64 1.13 16 45 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 46 H 0.09 2.81 3.16 -2.38 -0.01 2.81 16 47 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 48 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 50 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 51 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 52 H 0.05 2.50 8.14 -2.38 -0.02 2.48 16 53 H 0.08 4.89 5.14 -2.39 -0.01 4.88 16 Total: -1.00 -77.59 405.20 2.40 -75.19 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 0.26 Total: 22.21 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: 5.81 Total: 15.76 kcal Atomic # 7 Polarization: -95.74 SS G_CDS: -3.94 Total: -99.68 kcal Atomic # 8 Polarization: -58.03 SS G_CDS: -1.76 Total: -59.80 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -77.59 2.40 -75.19 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327332858.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.953 kcal (2) G-P(sol) polarization free energy of solvation -77.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds