Wall clock time and date at job start Sat Apr 11 2020 06:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.46953 * 2 1 4 4 C 1.42907 * 113.99852 * 184.55820 * 3 2 1 5 5 H 1.09001 * 109.46749 * 346.25635 * 4 3 2 6 6 C 1.52998 * 109.47004 * 106.25540 * 4 3 2 7 7 C 1.53005 * 109.47077 * 294.86038 * 6 4 3 8 8 C 1.50694 * 109.47016 * 226.25812 * 4 3 2 9 9 O 1.21287 * 119.99946 * 352.30142 * 8 4 3 10 10 N 1.34780 * 119.99982 * 172.30436 * 8 4 3 11 11 C 1.47147 * 120.98592 * 355.84971 * 10 8 4 12 12 C 1.53297 * 108.37251 * 129.43239 * 11 10 8 13 13 O 1.42963 * 109.22901 * 52.35204 * 12 11 10 14 14 C 1.42897 * 114.20615 * 297.50648 * 13 12 11 15 15 C 1.52992 * 109.55899 * 302.52495 * 14 13 12 16 16 C 1.53192 * 109.34942 * 300.95950 * 15 14 13 17 17 N 1.46927 * 108.77649 * 305.42963 * 16 15 14 18 18 C 1.36938 * 120.64192 * 233.64932 * 17 16 15 19 19 H 1.07996 * 120.00308 * 27.05207 * 18 17 16 20 20 C 1.38814 * 119.99779 * 207.05082 * 18 17 16 21 21 N 1.31611 * 120.00548 * 32.65754 * 20 18 17 22 22 Si 1.86805 * 119.99469 * 212.65879 * 20 18 17 23 23 H 1.48509 * 109.46844 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.47145 * 299.99536 * 22 20 18 25 25 H 1.48499 * 109.47539 * 60.00251 * 22 20 18 26 26 C 1.46933 * 118.71649 * 53.92838 * 17 16 15 27 27 C 1.52995 * 109.54731 * 182.23053 * 14 13 12 28 28 C 1.47156 * 120.98638 * 175.87421 * 10 8 4 29 29 H 1.09001 * 109.46998 * 299.99925 * 1 2 3 30 30 H 1.08998 * 109.47596 * 60.00056 * 1 2 3 31 31 H 1.09003 * 109.47067 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47057 * 239.99534 * 2 1 3 33 33 H 1.09001 * 109.47142 * 119.99702 * 2 1 3 34 34 H 1.09003 * 109.47209 * 54.86108 * 6 4 3 35 35 H 1.09005 * 109.46906 * 174.86512 * 6 4 3 36 36 H 1.09001 * 109.47015 * 64.92160 * 7 6 4 37 37 H 1.09001 * 109.46783 * 184.92162 * 7 6 4 38 38 H 1.08995 * 109.47158 * 304.91804 * 7 6 4 39 39 H 1.09003 * 109.68404 * 249.14940 * 11 10 8 40 40 H 1.09000 * 109.68451 * 9.71116 * 11 10 8 41 41 H 1.09006 * 109.51187 * 172.27791 * 12 11 10 42 42 H 1.09005 * 109.50989 * 292.37212 * 12 11 10 43 43 H 1.08997 * 109.48920 * 180.99490 * 15 14 13 44 44 H 1.09004 * 109.50937 * 60.93582 * 15 14 13 45 45 H 1.09006 * 109.58664 * 185.63892 * 16 15 14 46 46 H 1.09005 * 109.70574 * 65.28641 * 16 15 14 47 47 H 0.97002 * 119.99715 * 1.89408 * 21 20 18 48 48 H 1.09001 * 109.58868 * 65.84691 * 26 17 16 49 49 H 1.08998 * 109.58738 * 186.28389 * 26 17 16 50 50 H 1.08997 * 109.49099 * 179.00019 * 27 14 13 51 51 H 1.09004 * 109.48813 * 299.04622 * 27 14 13 52 52 H 1.09006 * 109.67389 * 110.72256 * 28 10 8 53 53 H 1.09001 * 109.67898 * 350.18222 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4270 1.4615 -0.1038 5 1 3.8841 0.4894 0.0810 6 6 3.7988 1.9413 -1.5082 7 6 3.4057 0.8747 -2.5323 8 6 3.9269 2.4533 0.9147 9 8 3.1373 3.1103 1.5598 10 7 5.2514 2.6104 1.1088 11 6 6.2260 1.7621 0.4047 12 6 7.2734 2.6704 -0.2494 13 8 7.8031 3.5626 0.7341 14 6 6.8373 4.4506 1.3004 15 6 6.1809 5.2704 0.1879 16 6 7.2569 6.0637 -0.5603 17 7 8.0166 6.8626 0.4110 18 6 8.1635 8.2134 0.2408 19 1 7.4180 8.7732 -0.3042 20 6 9.2708 8.8630 0.7690 21 7 10.4265 8.2380 0.8447 22 14 9.1202 10.6246 1.3722 23 1 10.4348 11.0856 1.8867 24 1 8.6939 11.4977 0.2492 25 1 8.1124 10.6907 2.4609 26 6 8.6209 6.1831 1.5651 27 6 7.5254 5.3896 2.2932 28 6 5.7656 3.6349 2.0316 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.2692 2.8684 -1.7275 35 1 4.8736 2.1158 -1.5598 36 1 2.3215 0.7626 -2.5421 37 1 3.7487 1.1771 -3.5217 38 1 3.8667 -0.0754 -2.2625 39 1 6.7122 1.0938 1.1155 40 1 5.7175 1.1770 -0.3616 41 1 8.0788 2.0609 -0.6594 42 1 6.8079 3.2450 -1.0502 43 1 5.4572 5.9597 0.6228 44 1 5.6736 4.6009 -0.5068 45 1 6.7844 6.7246 -1.2871 46 1 7.9294 5.3768 -1.0741 47 1 10.5115 7.3329 0.5063 48 1 9.4011 5.5036 1.2218 49 1 9.0492 6.9227 2.2416 50 1 6.7911 6.0781 2.7113 51 1 7.9739 4.8045 3.0962 52 1 6.2035 3.1542 2.9064 53 1 4.9524 4.2913 2.3413 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485006236.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:30 Heat of formation + Delta-G solvation = -120.414553 kcal Electronic energy + Delta-G solvation = -32600.425790 eV Core-core repulsion = 28472.241965 eV Total energy + Delta-G solvation = -4128.183826 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.08111 -40.53091 -38.83833 -38.00355 -36.06624 -34.92376 -34.46962 -32.90030 -31.95837 -31.62661 -30.10911 -29.27845 -27.37461 -25.67955 -24.76902 -23.98482 -23.75247 -23.12710 -22.48548 -20.74964 -20.19629 -19.43580 -18.63516 -18.12088 -17.19645 -17.02637 -16.83813 -16.47145 -16.32932 -16.12360 -15.83349 -15.46756 -15.39803 -15.24367 -15.13475 -15.05156 -14.84926 -14.30272 -13.77391 -13.67132 -13.45575 -13.32377 -13.29744 -13.24193 -13.14230 -12.96304 -12.83416 -12.63237 -12.53105 -12.23830 -12.18291 -12.12119 -12.01009 -11.94676 -11.87936 -11.79226 -11.50888 -11.32513 -10.99246 -10.91736 -10.37626 -10.36599 -9.63064 -8.91202 -8.35878 -5.34850 1.38500 1.56920 1.58806 1.64183 1.83833 2.62764 2.69203 2.72871 3.16103 3.29279 3.45288 3.62980 3.69640 3.72457 3.77561 3.80743 3.92401 4.08338 4.16243 4.19856 4.22868 4.27310 4.28368 4.34866 4.45284 4.47344 4.50728 4.57565 4.57850 4.64026 4.73117 4.76783 4.78664 4.81359 4.85717 4.92915 4.99810 5.00824 5.05752 5.11683 5.12392 5.15542 5.22574 5.25985 5.35397 5.43712 5.85427 6.03682 6.24366 6.28043 6.36705 6.99509 7.05110 7.78593 8.25069 8.94456 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.021696 B = 0.002778 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.243137 B =10075.145126 C =10241.300252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.044 3.956 3 O -0.386 6.386 4 C 0.082 3.918 5 H 0.120 0.880 6 C -0.139 4.139 7 C -0.147 4.147 8 C 0.503 3.497 9 O -0.573 6.573 10 N -0.607 5.607 11 C 0.068 3.932 12 C 0.033 3.967 13 O -0.377 6.377 14 C 0.129 3.871 15 C -0.138 4.138 16 C 0.156 3.844 17 N -0.614 5.614 18 C -0.369 4.369 19 H 0.043 0.957 20 C -0.067 4.067 21 N -0.927 5.927 22 Si 1.109 2.891 23 H -0.289 1.289 24 H -0.277 1.277 25 H -0.282 1.282 26 C 0.170 3.830 27 C -0.114 4.114 28 C 0.099 3.901 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.127 0.873 41 H 0.131 0.869 42 H 0.054 0.946 43 H 0.050 0.950 44 H 0.073 0.927 45 H 0.040 0.960 46 H 0.019 0.981 47 H 0.254 0.746 48 H 0.011 0.989 49 H 0.041 0.959 50 H 0.068 0.932 51 H 0.083 0.917 52 H 0.087 0.913 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.595 -24.068 -4.215 27.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.032 4.032 3 O -0.305 6.305 4 C 0.021 3.979 5 H 0.138 0.862 6 C -0.177 4.177 7 C -0.204 4.204 8 C 0.292 3.708 9 O -0.451 6.451 10 N -0.342 5.342 11 C -0.054 4.054 12 C -0.044 4.044 13 O -0.296 6.296 14 C 0.088 3.912 15 C -0.177 4.177 16 C 0.031 3.969 17 N -0.339 5.339 18 C -0.498 4.498 19 H 0.061 0.939 20 C -0.265 4.265 21 N -0.567 5.567 22 Si 0.934 3.066 23 H -0.215 1.215 24 H -0.203 1.203 25 H -0.208 1.208 26 C 0.044 3.956 27 C -0.153 4.153 28 C -0.024 4.024 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.117 0.883 40 H 0.145 0.855 41 H 0.149 0.851 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.091 0.909 45 H 0.059 0.941 46 H 0.037 0.963 47 H 0.063 0.937 48 H 0.029 0.971 49 H 0.059 0.941 50 H 0.086 0.914 51 H 0.101 0.899 52 H 0.105 0.895 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.155 -22.305 -3.140 26.085 hybrid contribution -0.813 -0.861 -0.733 1.393 sum -13.967 -23.166 -3.873 27.327 Atomic orbital electron populations 1.21768 0.93181 1.03493 1.02380 1.22938 0.96399 0.82297 1.01517 1.88043 1.19243 1.28683 1.94487 1.22051 0.83686 0.98540 0.93598 0.86214 1.22060 1.02595 1.00671 0.92374 1.21778 1.02007 0.98215 0.98366 1.21470 0.81590 0.84226 0.83546 1.90690 1.55776 1.48830 1.49785 1.48179 1.05451 1.35944 1.44577 1.22885 0.90620 0.93371 0.98513 1.23254 0.98509 0.91855 0.90751 1.88034 1.34987 1.49608 1.56981 1.21445 0.88187 0.88618 0.92907 1.22317 0.98135 0.98612 0.98612 1.20798 0.92225 0.92800 0.91094 1.44335 1.62174 1.04297 1.23048 1.20061 1.05875 0.84281 1.39607 0.93877 1.27096 0.90383 1.08736 1.00300 1.70926 1.23030 1.14299 1.48450 0.82935 0.75481 0.71385 0.76832 1.21488 1.20251 1.20813 1.20683 0.93067 0.93350 0.88459 1.21990 0.99111 0.97097 0.97150 1.22170 0.96802 0.90864 0.92600 0.93407 0.92136 0.88533 0.90417 0.92802 0.92726 0.88914 0.92561 0.91164 0.90313 0.88346 0.85518 0.85081 0.92795 0.93112 0.90851 0.94102 0.96264 0.93687 0.97054 0.94073 0.91363 0.89885 0.89464 0.90363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 10.28 71.98 0.74 -1.20 16 2 C 0.04 0.61 6.04 71.98 0.43 1.05 16 3 O -0.39 -8.66 9.23 -130.06 -1.20 -9.86 16 4 C 0.08 1.51 1.81 29.85 0.05 1.57 16 5 H 0.12 1.31 6.94 -2.39 -0.02 1.29 16 6 C -0.14 -2.13 5.19 30.60 0.16 -1.97 16 7 C -0.15 -1.42 8.90 71.98 0.64 -0.78 16 8 C 0.50 13.53 7.07 87.65 0.62 14.15 16 9 O -0.57 -21.45 16.01 15.87 0.25 -21.19 16 10 N -0.61 -14.28 2.52 -817.42 -2.06 -16.34 16 11 C 0.07 1.02 5.69 86.36 0.49 1.52 16 12 C 0.03 0.67 6.49 72.08 0.47 1.14 16 13 O -0.38 -11.55 9.00 -148.98 -1.34 -12.89 16 14 C 0.13 4.21 0.68 -10.71 -0.01 4.20 16 15 C -0.14 -4.96 4.33 30.66 0.13 -4.82 16 16 C 0.16 6.82 6.28 86.36 0.54 7.36 16 17 N -0.61 -31.86 2.84 -698.22 -1.98 -33.84 16 18 C -0.37 -21.39 9.41 84.03 0.79 -20.60 16 19 H 0.04 2.55 8.00 -2.91 -0.02 2.52 16 20 C -0.07 -3.90 4.45 84.86 0.38 -3.52 16 21 N -0.93 -57.27 12.63 21.65 0.27 -56.99 16 22 Si 1.11 52.12 30.02 68.60 2.06 54.18 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 24 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 26 C 0.17 8.22 4.65 86.51 0.40 8.62 16 27 C -0.11 -4.31 5.12 30.80 0.16 -4.16 16 28 C 0.10 2.82 5.28 86.34 0.46 3.28 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.08 0.67 6.66 -2.39 -0.02 0.65 16 33 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.09 1.19 5.40 -2.38 -0.01 1.18 16 36 H 0.06 0.63 7.10 -2.39 -0.02 0.61 16 37 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.13 1.06 4.51 -2.39 -0.01 1.05 16 41 H 0.13 1.92 8.14 -2.38 -0.02 1.90 16 42 H 0.05 1.16 5.97 -2.38 -0.01 1.15 16 43 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.07 2.31 6.16 -2.38 -0.01 2.30 16 45 H 0.04 1.83 7.93 -2.38 -0.02 1.81 16 46 H 0.02 0.84 7.83 -2.38 -0.02 0.82 16 47 H 0.25 16.08 7.22 -92.71 -0.67 15.41 16 48 H 0.01 0.58 7.70 -2.39 -0.02 0.56 16 49 H 0.04 2.23 6.47 -2.39 -0.02 2.22 16 50 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 51 H 0.08 2.74 8.14 -2.38 -0.02 2.72 16 52 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 53 H 0.08 2.59 7.11 -2.39 -0.02 2.58 16 Total: -1.00 -79.05 396.11 3.45 -75.60 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.99 Total: 15.51 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 6.46 Total: 5.83 kcal Atomic # 7 Polarization: -103.41 SS G_CDS: -3.77 Total: -107.18 kcal Atomic # 8 Polarization: -41.66 SS G_CDS: -2.29 Total: -43.95 kcal Atomic # 14 Polarization: 52.12 SS G_CDS: 2.06 Total: 54.18 kcal Total: -79.05 3.45 -75.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485006236.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.813 kcal (2) G-P(sol) polarization free energy of solvation -79.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds