Wall clock time and date at job start Sat Apr 11 2020 06:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46949 * 2 1 4 4 H 1.08997 * 109.47244 * 54.99777 * 3 2 1 5 5 C 1.53000 * 109.46605 * 174.99895 * 3 2 1 6 6 O 1.42899 * 109.46844 * 294.99242 * 3 2 1 7 7 C 1.42903 * 113.99620 * 150.00217 * 6 3 2 8 8 C 1.50703 * 109.47075 * 180.02562 * 7 6 3 9 9 O 1.21282 * 119.99932 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00223 * 180.02562 * 8 7 6 11 11 C 1.46938 * 120.63869 * 359.71915 * 10 8 7 12 12 C 1.53626 * 108.53449 * 126.29843 * 11 10 8 13 13 C 1.53000 * 109.27773 * 54.80401 * 12 11 10 14 14 C 1.52985 * 109.63227 * 298.66014 * 13 12 11 15 15 C 1.46928 * 120.64509 * 180.02562 * 10 8 7 16 16 C 1.53251 * 109.36435 * 178.71291 * 13 12 11 17 17 N 1.47153 * 108.41128 * 187.91350 * 16 13 12 18 18 C 1.36929 * 120.98924 * 230.49804 * 17 16 13 19 19 H 1.08004 * 120.00123 * 153.34072 * 18 17 16 20 20 C 1.38813 * 120.00067 * 333.33876 * 18 17 16 21 21 N 1.31615 * 120.00180 * 343.54317 * 20 18 17 22 22 Si 1.86802 * 119.99990 * 163.54206 * 20 18 17 23 23 H 1.48500 * 109.47047 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47259 * 120.00019 * 22 20 18 25 25 H 1.48508 * 109.46888 * 240.00028 * 22 20 18 26 26 C 1.47156 * 118.02194 * 50.47872 * 17 16 13 27 27 C 1.53297 * 108.37224 * 309.40272 * 26 17 16 28 28 O 1.42899 * 109.54358 * 58.91148 * 13 12 11 29 29 H 1.09000 * 109.46329 * 60.00163 * 1 2 3 30 30 H 1.08997 * 109.46917 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47084 * 300.00539 * 1 2 3 32 32 H 1.08990 * 109.47460 * 239.99494 * 2 1 3 33 33 H 1.08999 * 109.46934 * 119.99381 * 2 1 3 34 34 H 1.08998 * 109.47209 * 299.99303 * 5 3 2 35 35 H 1.08997 * 109.47416 * 59.99988 * 5 3 2 36 36 H 1.09009 * 109.46914 * 179.97438 * 5 3 2 37 37 H 1.08997 * 109.47493 * 300.00346 * 7 6 3 38 38 H 1.09004 * 109.47178 * 60.00683 * 7 6 3 39 39 H 1.08998 * 109.58414 * 246.12534 * 11 10 8 40 40 H 1.08995 * 109.58996 * 6.55790 * 11 10 8 41 41 H 1.09004 * 109.62733 * 294.80366 * 12 11 10 42 42 H 1.09000 * 109.44635 * 174.69678 * 12 11 10 43 43 H 1.08997 * 109.49610 * 301.24335 * 14 13 12 44 44 H 1.09004 * 109.51216 * 181.17818 * 14 13 12 45 45 H 1.09001 * 109.58621 * 353.43270 * 15 10 8 46 46 H 1.08995 * 109.59107 * 113.71741 * 15 10 8 47 47 H 1.08997 * 109.67929 * 307.65005 * 16 13 12 48 48 H 1.09008 * 109.67241 * 68.18530 * 16 13 12 49 49 H 0.96998 * 120.00101 * 179.97438 * 21 20 18 50 50 H 1.08993 * 109.68611 * 69.12685 * 26 17 16 51 51 H 1.08998 * 109.67937 * 189.68866 * 26 17 16 52 52 H 1.09000 * 109.51057 * 172.27987 * 27 26 17 53 53 H 1.08998 * 109.51352 * 292.37848 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5649 1.4443 0.1258 6 8 1.6621 2.0813 -1.2211 7 6 1.4560 3.4902 -1.1004 8 6 1.0628 4.0570 -2.4403 9 8 0.9680 3.3263 -3.4036 10 7 0.8167 5.3759 -2.5682 11 6 0.9215 6.2730 -1.4092 12 6 1.8690 7.4274 -1.7693 13 6 1.3741 8.1070 -3.0476 14 6 1.3796 7.1007 -4.1999 15 6 0.4318 5.9434 -3.8677 16 6 2.2997 9.2792 -3.3910 17 7 1.7028 10.0316 -4.5059 18 6 2.4368 10.3434 -5.6190 19 1 1.9427 10.4903 -6.5680 20 6 3.8161 10.4705 -5.5277 21 7 4.3872 10.6156 -4.3507 22 14 4.8618 10.4358 -7.0752 23 1 3.9850 10.2628 -8.2612 24 1 5.6113 11.7121 -7.1950 25 1 5.8204 9.3040 -6.9995 26 6 0.2935 10.4387 -4.3892 27 6 -0.5341 9.2084 -4.0000 28 8 0.0466 8.5960 -2.8459 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8898 33 1 1.8934 -0.5137 0.8900 34 1 3.8532 0.9571 1.0572 35 1 3.9995 0.9052 -0.7160 36 1 3.9283 2.4720 0.1253 37 1 0.6619 3.6808 -0.3785 38 1 2.3770 3.9644 -0.7611 39 1 -0.0639 6.6686 -1.1631 40 1 1.3203 5.7235 -0.5566 41 1 2.8748 7.0391 -1.9298 42 1 1.8844 8.1517 -0.9549 43 1 2.3893 6.7151 -4.3413 44 1 1.0467 7.5923 -5.1141 45 1 0.5076 5.1762 -4.6383 46 1 -0.5932 6.3104 -3.8170 47 1 2.4047 9.9303 -2.5232 48 1 3.2781 8.8999 -3.6863 49 1 5.3510 10.7041 -4.2869 50 1 0.1952 11.2054 -3.6207 51 1 -0.0562 10.8290 -5.3449 52 1 -1.5560 9.5135 -3.7748 53 1 -0.5401 8.4974 -4.8261 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485008853.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:51 Heat of formation + Delta-G solvation = -122.767050 kcal Electronic energy + Delta-G solvation = -31878.111217 eV Core-core repulsion = 27749.825379 eV Total energy + Delta-G solvation = -4128.285837 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.65057 -40.41638 -39.13906 -37.42196 -36.16550 -34.73858 -33.77083 -33.19570 -32.42627 -30.78019 -29.93539 -28.98602 -27.97436 -25.29368 -24.73591 -24.58611 -24.02863 -22.51278 -21.93294 -20.82031 -19.92047 -18.81873 -18.42938 -17.84934 -17.24558 -17.11579 -16.89659 -16.26712 -16.09934 -15.91325 -15.70680 -15.40758 -15.30915 -15.19727 -14.74922 -14.64762 -14.57687 -14.36528 -13.97904 -13.87493 -13.63322 -13.42381 -13.21717 -13.17575 -12.93845 -12.81750 -12.71695 -12.53873 -12.39555 -12.30233 -12.25030 -12.19769 -12.09301 -11.89409 -11.71860 -11.68602 -11.44479 -11.05061 -10.76024 -10.68670 -10.56825 -10.44052 -9.67515 -8.68846 -7.90612 -5.36614 1.41334 1.44676 1.53294 1.53498 1.72602 2.45364 2.84266 2.92346 3.23039 3.49052 3.55668 3.81805 3.90888 3.94912 3.99892 4.08038 4.10896 4.16301 4.22315 4.29805 4.31151 4.35301 4.45477 4.45848 4.51115 4.58319 4.68604 4.69528 4.74424 4.75120 4.81737 4.83677 4.91211 4.96489 5.00166 5.07839 5.09305 5.12488 5.15672 5.23841 5.28135 5.31535 5.34391 5.45864 5.49698 5.57206 5.63170 6.19134 6.30300 6.42482 6.44422 7.08237 7.12171 7.77490 8.30492 9.14301 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016202 B = 0.002751 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.731138 B =10175.491184 C =10926.481666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C 0.077 3.923 4 H 0.085 0.915 5 C -0.176 4.176 6 O -0.388 6.388 7 C 0.049 3.951 8 C 0.508 3.492 9 O -0.579 6.579 10 N -0.604 5.604 11 C 0.117 3.883 12 C -0.116 4.116 13 C 0.106 3.894 14 C -0.135 4.135 15 C 0.129 3.871 16 C 0.167 3.833 17 N -0.611 5.611 18 C -0.257 4.257 19 H 0.068 0.932 20 C -0.048 4.048 21 N -0.933 5.933 22 Si 0.960 3.040 23 H -0.268 1.268 24 H -0.291 1.291 25 H -0.292 1.292 26 C 0.104 3.896 27 C 0.053 3.947 28 O -0.377 6.377 29 H 0.037 0.963 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.058 0.942 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.118 0.882 41 H 0.074 0.926 42 H 0.092 0.908 43 H 0.049 0.951 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.079 0.921 47 H -0.002 1.002 48 H 0.058 0.942 49 H 0.250 0.750 50 H 0.017 0.983 51 H 0.066 0.934 52 H 0.117 0.883 53 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.270 -15.695 14.201 22.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C 0.020 3.980 4 H 0.103 0.897 5 C -0.233 4.233 6 O -0.308 6.308 7 C -0.030 4.030 8 C 0.298 3.702 9 O -0.458 6.458 10 N -0.338 5.338 11 C -0.004 4.004 12 C -0.154 4.154 13 C 0.066 3.934 14 C -0.173 4.173 15 C 0.006 3.994 16 C 0.041 3.959 17 N -0.335 5.335 18 C -0.387 4.387 19 H 0.085 0.915 20 C -0.244 4.244 21 N -0.579 5.579 22 Si 0.789 3.211 23 H -0.192 1.192 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.021 4.021 27 C -0.025 4.025 28 O -0.296 6.296 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.117 0.883 34 H 0.106 0.894 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.129 0.871 38 H 0.119 0.881 39 H 0.109 0.891 40 H 0.136 0.864 41 H 0.093 0.907 42 H 0.111 0.889 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.098 0.902 47 H 0.016 0.984 48 H 0.077 0.923 49 H 0.059 0.941 50 H 0.035 0.965 51 H 0.084 0.916 52 H 0.135 0.865 53 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.287 -16.165 13.711 22.759 hybrid contribution 1.291 0.881 -1.349 2.065 sum -6.996 -15.284 12.362 20.866 Atomic orbital electron populations 1.21722 0.95479 1.01972 1.01624 1.21667 0.96560 0.94517 1.03031 1.22471 0.94912 0.94421 0.86236 0.89711 1.22317 0.95468 1.02644 1.02909 1.88037 1.89768 1.18736 1.34218 1.22373 1.03378 0.83633 0.93634 1.20971 0.76392 0.81673 0.91208 1.90678 1.53493 1.59409 1.42238 1.48168 1.67735 1.06726 1.11153 1.22000 1.01147 0.90141 0.87137 1.21934 0.99203 0.97847 0.96453 1.21925 0.83753 0.92685 0.95081 1.22157 0.99536 0.95939 0.99706 1.21374 0.98186 0.94666 0.85164 1.21174 0.95634 0.90431 0.88644 1.44318 1.08143 1.62645 1.18439 1.19492 0.89556 1.41702 0.87925 0.91456 1.25706 0.98839 1.00832 0.98976 1.70160 1.09522 1.54347 1.23875 0.85311 0.78842 0.76766 0.80204 1.19193 1.21851 1.21881 1.21782 0.85250 0.95734 0.99355 1.23040 0.96947 0.93818 0.88712 1.87774 1.28779 1.76991 1.36024 0.94354 0.92024 0.91653 0.92703 0.88296 0.89401 0.93289 0.92299 0.87108 0.88110 0.89142 0.86411 0.90718 0.88910 0.93203 0.91100 0.91038 0.90234 0.98350 0.92313 0.94097 0.96528 0.91590 0.86521 0.93217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.81 71.98 0.71 -1.50 16 2 C -0.12 -1.72 5.64 30.60 0.17 -1.54 16 3 C 0.08 1.18 2.72 30.60 0.08 1.26 16 4 H 0.08 0.89 7.79 -2.39 -0.02 0.88 16 5 C -0.18 -2.44 9.53 71.98 0.69 -1.76 16 6 O -0.39 -9.21 9.06 -129.94 -1.18 -10.39 16 7 C 0.05 0.95 4.57 71.24 0.33 1.28 16 8 C 0.51 14.65 7.78 87.66 0.68 15.33 16 9 O -0.58 -22.48 15.91 16.00 0.25 -22.23 16 10 N -0.60 -16.07 2.96 -817.94 -2.42 -18.50 16 11 C 0.12 2.39 6.13 86.51 0.53 2.92 16 12 C -0.12 -3.15 5.12 30.80 0.16 -3.00 16 13 C 0.11 3.74 0.68 -10.71 -0.01 3.74 16 14 C -0.13 -4.80 4.33 30.67 0.13 -4.66 16 15 C 0.13 3.94 6.20 86.38 0.54 4.47 16 16 C 0.17 7.78 4.09 86.34 0.35 8.13 16 17 N -0.61 -29.89 2.55 -697.62 -1.78 -31.67 16 18 C -0.26 -13.85 9.65 84.03 0.81 -13.04 16 19 H 0.07 3.56 7.88 -2.91 -0.02 3.53 16 20 C -0.05 -2.65 4.95 84.86 0.42 -2.23 16 21 N -0.93 -54.32 11.14 21.65 0.24 -54.08 16 22 Si 0.96 44.86 29.58 68.60 2.03 46.89 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 26 C 0.10 4.16 6.74 86.35 0.58 4.74 16 27 C 0.05 1.67 6.60 72.08 0.48 2.15 16 28 O -0.38 -12.49 9.00 -148.98 -1.34 -13.83 16 29 H 0.04 0.76 7.82 -2.39 -0.02 0.74 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.09 0.81 8.14 -2.39 -0.02 0.80 16 35 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.06 0.81 7.87 -2.38 -0.02 0.79 16 37 H 0.11 1.40 7.88 -2.39 -0.02 1.39 16 38 H 0.10 1.51 7.43 -2.38 -0.02 1.49 16 39 H 0.09 1.75 7.82 -2.39 -0.02 1.73 16 40 H 0.12 1.47 5.93 -2.39 -0.01 1.45 16 41 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 42 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.07 2.78 6.16 -2.38 -0.01 2.76 16 45 H 0.07 2.42 7.01 -2.39 -0.02 2.40 16 46 H 0.08 2.26 7.83 -2.39 -0.02 2.24 16 47 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 48 H 0.06 3.12 6.15 -2.38 -0.01 3.11 16 49 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 50 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 51 H 0.07 2.51 7.96 -2.39 -0.02 2.50 16 52 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 53 H 0.05 1.58 6.29 -2.39 -0.02 1.57 16 Total: -1.00 -73.30 403.90 3.32 -69.98 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.87 Total: 17.55 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: 6.65 Total: 16.28 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -3.96 Total: -104.25 kcal Atomic # 8 Polarization: -44.18 SS G_CDS: -2.26 Total: -46.45 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -73.30 3.32 -69.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485008853.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.790 kcal (2) G-P(sol) polarization free energy of solvation -73.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds