Wall clock time and date at job start Sat Apr 11 2020 06:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47352 * 2 1 4 4 H 1.08998 * 109.47576 * 305.19130 * 3 2 1 5 5 O 1.42906 * 109.47113 * 65.18732 * 3 2 1 6 6 C 1.42902 * 114.00063 * 247.81679 * 5 3 2 7 7 C 1.50698 * 109.47041 * 185.18575 * 3 2 1 8 8 O 1.21281 * 119.99935 * 245.00222 * 7 3 2 9 9 N 1.34777 * 120.00120 * 65.00471 * 7 3 2 10 10 C 1.46496 * 120.00028 * 179.97438 * 9 7 3 11 11 C 1.53003 * 109.47275 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.41363 * 304.15413 * 11 10 9 13 13 C 1.54607 * 110.37177 * 181.85116 * 11 10 9 14 14 C 1.53988 * 103.88696 * 217.27208 * 13 11 10 15 15 C 1.53977 * 104.57496 * 0.14445 * 14 13 11 16 16 O 1.44472 * 110.36791 * 66.45140 * 11 10 9 17 17 C 1.52407 * 110.27641 * 241.62860 * 14 13 11 18 18 C 1.53273 * 109.44828 * 297.23441 * 17 14 13 19 19 N 1.46930 * 108.85738 * 306.25067 * 18 17 14 20 20 C 1.36931 * 120.59857 * 234.26881 * 19 18 17 21 21 H 1.08007 * 120.00220 * 26.07699 * 20 19 18 22 22 C 1.38815 * 120.00168 * 206.07645 * 20 19 18 23 23 N 1.31618 * 119.99699 * 17.89182 * 22 20 19 24 24 Si 1.86797 * 120.00236 * 197.89307 * 22 20 19 25 25 H 1.48502 * 109.47335 * 59.99866 * 24 22 20 26 26 H 1.48494 * 109.47107 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47004 * 299.99923 * 24 22 20 28 28 C 1.47225 * 118.60913 * 54.12660 * 19 18 17 29 29 C 1.52409 * 110.27856 * 118.66142 * 14 13 11 30 30 H 1.08998 * 109.47644 * 181.80031 * 1 2 3 31 31 H 1.09005 * 109.46851 * 301.80198 * 1 2 3 32 32 H 1.09008 * 109.47455 * 61.79652 * 1 2 3 33 33 H 1.08999 * 109.46524 * 240.00268 * 2 1 3 34 34 H 1.08998 * 109.47288 * 120.00840 * 2 1 3 35 35 H 1.08997 * 109.46916 * 302.82733 * 6 5 3 36 36 H 1.08995 * 109.47006 * 62.82948 * 6 5 3 37 37 H 1.09000 * 109.46915 * 182.82398 * 6 5 3 38 38 H 0.96998 * 119.99507 * 0.02562 * 9 7 3 39 39 H 1.09003 * 109.47366 * 59.99490 * 10 9 7 40 40 H 1.09004 * 109.47086 * 299.99640 * 10 9 7 41 41 H 1.08996 * 110.54619 * 98.66910 * 13 11 10 42 42 H 1.08997 * 110.54215 * 335.87290 * 13 11 10 43 43 H 1.09006 * 110.38895 * 142.42288 * 15 14 13 44 44 H 1.08996 * 110.39552 * 264.81299 * 15 14 13 45 45 H 1.09000 * 109.47297 * 177.23957 * 17 14 13 46 46 H 1.09002 * 109.47818 * 57.23227 * 17 14 13 47 47 H 1.09006 * 109.59788 * 66.10254 * 18 17 14 48 48 H 1.09002 * 109.59829 * 186.40023 * 18 17 14 49 49 H 0.97003 * 119.99587 * 179.97438 * 23 22 20 50 50 H 1.08994 * 109.53803 * 186.10181 * 28 19 18 51 51 H 1.09001 * 109.69098 * 65.77483 * 28 19 18 52 52 H 1.08991 * 109.47819 * 182.75623 * 29 14 13 53 53 H 1.09005 * 109.47093 * 302.77000 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6028 1.9825 -0.8398 5 8 1.6658 2.0800 1.2229 6 6 0.6990 3.1203 1.0639 7 6 3.5415 1.4443 -0.1284 8 8 4.2274 1.8600 0.7813 9 7 4.1222 0.9840 -1.2543 10 6 5.5818 0.9864 -1.3793 11 6 5.9778 0.4164 -2.7429 12 1 5.5524 -0.5781 -2.8773 13 6 7.5171 0.3662 -2.8787 14 6 7.7700 0.7308 -4.3533 15 6 6.3661 0.9632 -4.9413 16 8 5.5419 1.2972 -3.8018 17 6 8.4587 -0.4234 -5.0721 18 6 9.8302 -0.6752 -4.4358 19 7 10.5869 0.5842 -4.4245 20 6 11.8366 0.6515 -4.9800 21 1 12.1140 -0.0310 -5.7698 22 6 12.7471 1.5969 -4.5281 23 7 12.5645 2.1823 -3.3635 24 14 14.2314 2.0383 -5.5728 25 1 13.7748 2.5759 -6.8796 26 1 15.0431 3.0648 -4.8710 27 1 15.0567 0.8244 -5.7981 28 6 9.9718 1.7707 -3.8068 29 6 8.5993 2.0060 -4.4474 30 1 -0.3634 -1.0271 0.0323 31 1 -0.3633 0.5416 0.8734 32 1 -0.3634 0.4857 -0.9057 33 1 1.8932 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.0809 3.8681 0.3689 36 1 -0.2267 2.6991 0.6720 37 1 0.5054 3.5871 2.0297 38 1 3.5735 0.6519 -1.9820 39 1 6.0151 0.3726 -0.5896 40 1 5.9524 2.0076 -1.2904 41 1 7.8876 -0.6360 -2.6635 42 1 7.9834 1.0974 -2.2185 43 1 6.3841 1.7894 -5.6522 44 1 6.0004 0.0557 -5.4216 45 1 8.5871 -0.1710 -6.1246 46 1 7.8475 -1.3218 -4.9857 47 1 9.6993 -1.0322 -3.4143 48 1 10.3714 -1.4216 -5.0173 49 1 13.2010 2.8427 -3.0476 50 1 10.6075 2.6400 -3.9747 51 1 9.8521 1.6068 -2.7358 52 1 8.7290 2.2788 -5.4946 53 1 8.0867 2.8123 -3.9226 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500011536.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:11 Heat of formation + Delta-G solvation = -137.379013 kcal Electronic energy + Delta-G solvation = -30910.503085 eV Core-core repulsion = 26781.583626 eV Total energy + Delta-G solvation = -4128.919460 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.53548 -40.94296 -38.76514 -38.21434 -35.98571 -35.03693 -34.32115 -32.71662 -31.86054 -31.58134 -29.28908 -28.38725 -27.30424 -25.96881 -25.52576 -23.92627 -23.08507 -22.68227 -22.29837 -21.44362 -19.75902 -18.69490 -18.43771 -18.13413 -17.32862 -16.91998 -16.82616 -16.49796 -16.23175 -16.11617 -15.68157 -15.60973 -15.31179 -15.21908 -14.89671 -14.81534 -14.63308 -14.24215 -14.01637 -13.83530 -13.50869 -13.35893 -13.20918 -12.99860 -12.97834 -12.87311 -12.55490 -12.50176 -12.40413 -12.30769 -12.20755 -12.13812 -11.91416 -11.82896 -11.74356 -11.52868 -11.25950 -11.09141 -11.01824 -10.61594 -10.48203 -10.36828 -10.19051 -8.67523 -7.86639 -5.29619 1.45295 1.47783 1.51786 1.54474 1.88471 2.51109 2.83505 2.97063 3.26515 3.53768 3.62498 3.70862 3.78235 3.84666 3.91434 3.93474 4.03901 4.12581 4.26224 4.34657 4.41817 4.43197 4.50956 4.51607 4.56980 4.59315 4.70558 4.72550 4.76329 4.82241 4.84725 4.85384 4.87494 4.93240 5.02133 5.06515 5.08895 5.17408 5.25251 5.27367 5.33693 5.36454 5.40307 5.42946 5.53664 5.64419 5.79466 5.90424 6.04579 6.38839 6.52217 7.14991 7.19052 7.88646 8.39313 9.19053 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023840 B = 0.002114 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.213014 B =13240.350622 C =13810.540661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C 0.077 3.923 4 H 0.117 0.883 5 O -0.390 6.390 6 C 0.021 3.979 7 C 0.496 3.504 8 O -0.580 6.580 9 N -0.706 5.706 10 C 0.130 3.870 11 C 0.079 3.921 12 H 0.106 0.894 13 C -0.136 4.136 14 C -0.076 4.076 15 C 0.061 3.939 16 O -0.381 6.381 17 C -0.107 4.107 18 C 0.138 3.862 19 N -0.610 5.610 20 C -0.258 4.258 21 H 0.068 0.932 22 C -0.056 4.056 23 N -0.936 5.936 24 Si 0.965 3.035 25 H -0.278 1.278 26 H -0.297 1.297 27 H -0.275 1.275 28 C 0.177 3.823 29 C -0.113 4.113 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.060 0.940 35 H 0.045 0.955 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.418 0.582 39 H 0.079 0.921 40 H 0.050 0.950 41 H 0.087 0.913 42 H 0.056 0.944 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.059 0.941 46 H 0.090 0.910 47 H 0.017 0.983 48 H 0.051 0.949 49 H 0.248 0.752 50 H 0.049 0.951 51 H -0.004 1.004 52 H 0.051 0.949 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.235 -5.710 0.067 28.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C 0.015 3.985 4 H 0.135 0.865 5 O -0.308 6.308 6 C -0.075 4.075 7 C 0.282 3.718 8 O -0.459 6.459 9 N -0.360 5.360 10 C 0.005 3.995 11 C 0.021 3.979 12 H 0.123 0.877 13 C -0.174 4.174 14 C -0.076 4.076 15 C -0.015 4.015 16 O -0.301 6.301 17 C -0.146 4.146 18 C 0.013 3.987 19 N -0.333 5.333 20 C -0.388 4.388 21 H 0.086 0.914 22 C -0.251 4.251 23 N -0.583 5.583 24 Si 0.794 3.206 25 H -0.205 1.205 26 H -0.224 1.224 27 H -0.200 1.200 28 C 0.052 3.948 29 C -0.152 4.152 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.117 0.883 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.112 0.888 38 H 0.256 0.744 39 H 0.097 0.903 40 H 0.069 0.931 41 H 0.105 0.895 42 H 0.074 0.926 43 H 0.109 0.891 44 H 0.105 0.895 45 H 0.078 0.922 46 H 0.109 0.891 47 H 0.035 0.965 48 H 0.070 0.930 49 H 0.057 0.943 50 H 0.067 0.933 51 H 0.014 0.986 52 H 0.070 0.930 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -27.733 -5.201 0.981 28.234 hybrid contribution 1.529 0.627 -0.490 1.724 sum -26.204 -4.574 0.492 26.605 Atomic orbital electron populations 1.21766 0.93206 1.03104 1.02539 1.21878 0.98354 0.92587 1.03772 1.22202 0.89142 0.97405 0.89720 0.86537 1.87995 1.61626 1.51888 1.29264 1.23151 0.91373 0.89398 1.03607 1.21562 0.91883 0.76565 0.81744 1.90711 1.66300 1.47779 1.41084 1.45773 1.07424 1.64476 1.18349 1.21349 0.80717 1.01275 0.96111 1.23210 0.93592 0.94522 0.86534 0.87658 1.22941 0.95093 1.02905 0.96477 1.21306 0.95626 0.95739 0.94955 1.23547 0.87323 1.01961 0.88659 1.89101 1.59091 1.60008 1.21894 1.21826 0.96208 0.97403 0.99168 1.21128 0.92322 0.87919 0.97324 1.44364 1.14942 1.05854 1.68161 1.19503 0.90046 1.17014 1.12268 0.91412 1.25758 1.00543 1.01984 0.96828 1.70191 1.38332 1.30916 1.18865 0.85368 0.79355 0.77619 0.78304 1.20463 1.22356 1.20031 1.20638 0.91210 0.90442 0.92536 1.21914 0.96430 0.96567 1.00282 0.91138 0.92813 0.91012 0.88273 0.92158 0.93660 0.91279 0.88787 0.74400 0.90313 0.93142 0.89469 0.92570 0.89074 0.89546 0.92248 0.89116 0.96479 0.92996 0.94311 0.93283 0.98588 0.93045 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.50 71.98 0.68 -0.50 16 2 C -0.13 -1.49 5.61 30.59 0.17 -1.32 16 3 C 0.08 1.28 2.65 29.85 0.08 1.36 16 4 H 0.12 1.25 7.61 -2.39 -0.02 1.23 16 5 O -0.39 -8.37 9.44 -129.99 -1.23 -9.60 16 6 C 0.02 0.27 10.44 113.37 1.18 1.45 16 7 C 0.50 12.15 7.18 87.66 0.63 12.78 16 8 O -0.58 -20.89 16.51 15.96 0.26 -20.62 16 9 N -0.71 -13.69 5.44 -463.06 -2.52 -16.21 16 10 C 0.13 3.09 5.29 86.38 0.46 3.55 16 11 C 0.08 1.67 3.34 31.14 0.10 1.77 16 12 H 0.11 1.60 8.14 -2.39 -0.02 1.59 16 13 C -0.14 -3.74 4.97 31.48 0.16 -3.58 16 14 C -0.08 -2.18 0.68 -51.91 -0.04 -2.21 16 15 C 0.06 1.37 6.72 72.31 0.49 1.85 16 16 O -0.38 -8.90 11.33 -148.98 -1.69 -10.59 16 17 C -0.11 -3.09 4.63 30.49 0.14 -2.95 16 18 C 0.14 5.37 6.19 86.39 0.54 5.90 16 19 N -0.61 -30.15 3.00 -697.98 -2.10 -32.25 16 20 C -0.26 -14.17 9.60 84.04 0.81 -13.37 16 21 H 0.07 3.60 7.88 -2.91 -0.02 3.58 16 22 C -0.06 -3.18 4.92 84.86 0.42 -2.76 16 23 N -0.94 -56.51 11.11 21.65 0.24 -56.27 16 24 Si 0.97 45.39 29.59 68.60 2.03 47.42 16 25 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 26 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 27 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 28 C 0.18 8.59 5.05 86.34 0.44 9.03 16 29 C -0.11 -4.20 4.63 30.49 0.14 -4.06 16 30 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.53 6.88 -2.38 -0.02 0.51 16 32 H 0.07 0.35 8.14 -2.38 -0.02 0.33 16 33 H 0.10 0.72 7.76 -2.39 -0.02 0.70 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.04 0.57 8.13 -2.39 -0.02 0.55 16 36 H 0.07 0.55 7.15 -2.39 -0.02 0.53 16 37 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.42 5.22 8.18 -92.71 -0.76 4.47 16 39 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 41 H 0.09 2.29 6.59 -2.39 -0.02 2.28 16 42 H 0.06 1.88 6.33 -2.39 -0.02 1.86 16 43 H 0.09 2.03 7.85 -2.38 -0.02 2.02 16 44 H 0.09 1.48 7.83 -2.39 -0.02 1.46 16 45 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.09 1.96 8.13 -2.39 -0.02 1.94 16 47 H 0.02 0.67 6.86 -2.38 -0.02 0.66 16 48 H 0.05 1.99 7.92 -2.39 -0.02 1.97 16 49 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 50 H 0.05 2.76 5.92 -2.39 -0.01 2.75 16 51 H 0.00 -0.20 6.87 -2.39 -0.02 -0.22 16 52 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 53 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 Total: -1.00 -76.35 406.75 1.53 -74.82 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.13 Total: 16.35 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 6.39 Total: 6.95 kcal Atomic # 7 Polarization: -100.36 SS G_CDS: -4.37 Total: -104.73 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -2.65 Total: -40.81 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -76.35 1.53 -74.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500011536.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.561 kcal (2) G-P(sol) polarization free energy of solvation -76.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds