Wall clock time and date at job start Sat Apr 11 2020 06:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42904 * 109.47191 * 2 1 4 4 C 1.42901 * 114.00015 * 184.25568 * 3 2 1 5 5 H 1.09003 * 109.47350 * 349.86450 * 4 3 2 6 6 C 1.53007 * 109.46766 * 109.85867 * 4 3 2 7 7 C 1.53004 * 109.47151 * 295.64528 * 6 4 3 8 8 C 1.50693 * 109.47185 * 229.85808 * 4 3 2 9 9 O 1.21276 * 119.99980 * 355.42964 * 8 4 3 10 10 N 1.34779 * 119.99717 * 175.15618 * 8 4 3 11 11 C 1.46932 * 120.64456 * 356.18759 * 10 8 4 12 12 C 1.53629 * 108.53184 * 126.29777 * 11 10 8 13 13 C 1.52991 * 109.27364 * 54.81241 * 12 11 10 14 14 C 1.52989 * 109.63515 * 298.65433 * 13 12 11 15 15 C 1.46931 * 120.63858 * 176.47508 * 10 8 4 16 16 C 1.53260 * 109.36412 * 178.71174 * 13 12 11 17 17 N 1.47149 * 108.41281 * 187.91114 * 16 13 12 18 18 C 1.36936 * 120.98888 * 230.49522 * 17 16 13 19 19 H 1.08001 * 119.99856 * 27.87025 * 18 17 16 20 20 C 1.38811 * 119.99902 * 207.87495 * 18 17 16 21 21 N 1.31616 * 120.00247 * 14.49471 * 20 18 17 22 22 Si 1.86798 * 119.99713 * 194.49497 * 20 18 17 23 23 H 1.48497 * 109.47214 * 94.98281 * 22 20 18 24 24 H 1.48501 * 109.47526 * 214.98109 * 22 20 18 25 25 H 1.48506 * 109.47541 * 334.98347 * 22 20 18 26 26 C 1.47150 * 118.02316 * 50.47869 * 17 16 13 27 27 C 1.53306 * 108.37366 * 309.40007 * 26 17 16 28 28 O 1.42897 * 109.55165 * 58.91459 * 13 12 11 29 29 H 1.08995 * 109.46988 * 60.00256 * 1 2 3 30 30 H 1.09002 * 109.47252 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47109 * 300.00082 * 1 2 3 32 32 H 1.08995 * 109.47145 * 239.99567 * 2 1 3 33 33 H 1.09006 * 109.47333 * 119.99479 * 2 1 3 34 34 H 1.08993 * 109.47232 * 55.64762 * 6 4 3 35 35 H 1.09000 * 109.46632 * 175.64890 * 6 4 3 36 36 H 1.09000 * 109.47429 * 305.60169 * 7 6 4 37 37 H 1.09001 * 109.46712 * 65.60140 * 7 6 4 38 38 H 1.08998 * 109.47072 * 185.59671 * 7 6 4 39 39 H 1.08995 * 109.58789 * 246.12731 * 11 10 8 40 40 H 1.09005 * 109.58378 * 6.56422 * 11 10 8 41 41 H 1.08999 * 109.63106 * 294.80673 * 12 11 10 42 42 H 1.09002 * 109.42022 * 174.68601 * 12 11 10 43 43 H 1.09009 * 109.48910 * 301.24997 * 14 13 12 44 44 H 1.08999 * 109.51231 * 181.18505 * 14 13 12 45 45 H 1.08994 * 109.59007 * 353.43255 * 15 10 8 46 46 H 1.09001 * 109.58845 * 113.72167 * 15 10 8 47 47 H 1.08999 * 109.67604 * 307.64531 * 16 13 12 48 48 H 1.09008 * 109.67286 * 68.14107 * 16 13 12 49 49 H 0.96998 * 120.00165 * 179.97438 * 21 20 18 50 50 H 1.08994 * 109.69052 * 69.12733 * 26 17 16 51 51 H 1.09007 * 109.68055 * 189.68668 * 26 17 16 52 52 H 1.09000 * 109.50789 * 172.27845 * 27 26 17 53 53 H 1.09000 * 109.51150 * 292.43209 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4275 1.4613 -0.0969 5 1 3.8804 0.4777 0.0283 6 6 3.8015 2.0239 -1.4697 7 6 3.3860 1.0319 -2.5579 8 6 3.9317 2.3873 0.9798 9 8 3.1453 2.9638 1.7009 10 7 5.2568 2.5704 1.1449 11 6 6.2237 1.8120 0.3395 12 6 7.1788 2.8052 -0.3398 13 6 7.8139 3.7031 0.7238 14 6 6.7228 4.4982 1.4435 15 6 5.7623 3.5278 2.1382 16 6 8.7915 4.6735 0.0518 17 7 9.5284 5.3929 1.1029 18 6 9.6227 6.7590 1.0889 19 1 8.8450 7.3492 0.6270 20 6 10.7178 7.3850 1.6682 21 7 11.7905 6.6860 1.9728 22 14 10.6689 9.2198 2.0155 23 1 10.2434 9.4466 3.4200 24 1 12.0204 9.7991 1.8081 25 1 9.7039 9.8725 1.0945 26 6 10.1607 4.6008 2.1696 27 6 9.1146 3.6361 2.7400 28 8 8.5215 2.8980 1.6688 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 3.2868 2.9718 -1.6264 35 1 4.8788 2.1834 -1.5157 36 1 3.8221 0.0557 -2.3455 37 1 2.2994 0.9479 -2.5772 38 1 3.7403 1.3852 -3.5262 39 1 6.7894 1.1399 0.9847 40 1 5.6946 1.2349 -0.4189 41 1 6.6247 3.4188 -1.0501 42 1 7.9598 2.2555 -0.8652 43 1 6.1723 5.0984 0.7190 44 1 7.1791 5.1525 2.1862 45 1 4.9287 4.0835 2.5675 46 1 6.2891 2.9915 2.9276 47 1 9.4911 4.1167 -0.5715 48 1 8.2388 5.3847 -0.5622 49 1 12.5559 7.1236 2.3773 50 1 10.9973 4.0348 1.7601 51 1 10.5165 5.2643 2.9579 52 1 9.5952 2.9471 3.4346 53 1 8.3437 4.2025 3.2625 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717345358.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:53 Heat of formation + Delta-G solvation = -117.234969 kcal Electronic energy + Delta-G solvation = -32354.838319 eV Core-core repulsion = 28226.792370 eV Total energy + Delta-G solvation = -4128.045948 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.83638 -40.56313 -38.84825 -37.49359 -36.16293 -34.82964 -33.82187 -32.94042 -32.15684 -31.87477 -30.06005 -28.64460 -27.72197 -25.29325 -24.74645 -24.27366 -23.66743 -22.89027 -22.46250 -20.87627 -19.87978 -18.81631 -18.54491 -17.91642 -17.05000 -16.95031 -16.81428 -16.59660 -16.22984 -15.98144 -15.79664 -15.51400 -15.26982 -15.16087 -15.00070 -14.74514 -14.59890 -14.26409 -13.81010 -13.46888 -13.31110 -13.23309 -13.20715 -13.12072 -13.00824 -12.94959 -12.80241 -12.69571 -12.45409 -12.31510 -12.20522 -12.14732 -12.10174 -12.03988 -11.77300 -11.72417 -11.63169 -11.13067 -10.89078 -10.71898 -10.46070 -10.28038 -9.68944 -8.66819 -7.89547 -5.38051 1.43818 1.45756 1.50012 1.54068 1.77724 2.46144 2.79357 2.88914 3.24932 3.40372 3.53070 3.77626 3.81831 3.86079 3.90244 3.94422 4.10459 4.20362 4.28025 4.30878 4.34924 4.38466 4.46891 4.49584 4.52033 4.55918 4.57787 4.70369 4.77313 4.78941 4.81629 4.82351 4.86087 4.94077 4.99164 5.03467 5.05948 5.10291 5.12779 5.18867 5.27439 5.29658 5.35351 5.43608 5.53259 5.57387 5.63850 6.13292 6.31274 6.41522 6.42944 7.08774 7.11236 7.77402 8.31019 9.15207 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.022491 B = 0.002669 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.626989 B =10487.965633 C =10612.152169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.384 6.384 4 C 0.081 3.919 5 H 0.117 0.883 6 C -0.139 4.139 7 C -0.146 4.146 8 C 0.500 3.500 9 O -0.579 6.579 10 N -0.601 5.601 11 C 0.106 3.894 12 C -0.115 4.115 13 C 0.111 3.889 14 C -0.138 4.138 15 C 0.127 3.873 16 C 0.123 3.877 17 N -0.608 5.608 18 C -0.257 4.257 19 H 0.066 0.934 20 C -0.048 4.048 21 N -0.935 5.935 22 Si 0.965 3.035 23 H -0.287 1.287 24 H -0.295 1.295 25 H -0.270 1.270 26 C 0.148 3.852 27 C 0.050 3.950 28 O -0.376 6.376 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.121 0.879 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.020 0.980 48 H 0.060 0.940 49 H 0.250 0.750 50 H 0.000 1.000 51 H 0.061 0.939 52 H 0.103 0.897 53 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.319 -17.885 -7.529 25.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 O -0.303 6.303 4 C 0.020 3.980 5 H 0.134 0.866 6 C -0.177 4.177 7 C -0.204 4.204 8 C 0.289 3.711 9 O -0.459 6.459 10 N -0.334 5.334 11 C -0.015 4.015 12 C -0.153 4.153 13 C 0.070 3.930 14 C -0.177 4.177 15 C 0.004 3.996 16 C -0.003 4.003 17 N -0.332 5.332 18 C -0.387 4.387 19 H 0.084 0.916 20 C -0.244 4.244 21 N -0.581 5.581 22 Si 0.793 3.207 23 H -0.214 1.214 24 H -0.221 1.221 25 H -0.194 1.194 26 C 0.023 3.977 27 C -0.028 4.028 28 O -0.295 6.295 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.139 0.861 41 H 0.110 0.890 42 H 0.118 0.882 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.038 0.962 48 H 0.078 0.922 49 H 0.060 0.940 50 H 0.018 0.982 51 H 0.080 0.920 52 H 0.121 0.879 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.718 -17.560 -7.110 25.267 hybrid contribution 0.838 1.741 0.695 2.054 sum -15.880 -15.818 -6.415 23.314 Atomic orbital electron populations 1.21759 0.93102 1.03437 1.02414 1.22903 0.96442 0.82445 1.01295 1.88021 1.19299 1.28470 1.94517 1.22080 0.83452 0.99139 0.93367 0.86585 1.22095 1.03028 1.00401 0.92154 1.21756 1.01790 0.98951 0.97858 1.21499 0.81767 0.82901 0.84982 1.90664 1.56186 1.50987 1.48028 1.48183 1.05245 1.41280 1.38728 1.22176 0.90293 0.93685 0.95348 1.22004 0.99164 0.97970 0.96164 1.21821 0.90171 0.91170 0.89825 1.22202 0.96504 0.98032 1.00952 1.21332 0.96631 0.90763 0.90864 1.21699 0.93489 0.94219 0.90850 1.44241 1.61816 1.02281 1.24907 1.19450 1.01874 0.82660 1.34732 0.91633 1.25775 0.94513 1.01654 1.02451 1.70152 1.04249 1.36421 1.47249 0.85286 0.76639 0.80697 0.78041 1.21358 1.22126 1.19428 1.21233 0.92401 0.92354 0.91755 1.23117 0.95374 0.95097 0.89192 1.87778 1.70385 1.33938 1.37428 0.91948 0.88672 0.93431 0.90524 0.93196 0.92401 0.88263 0.90732 0.92739 0.91045 0.89845 0.86140 0.89014 0.88189 0.91568 0.91583 0.91145 0.91169 0.96191 0.92187 0.94047 0.98192 0.92019 0.87892 0.93644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 10.28 71.98 0.74 -1.26 16 2 C 0.05 0.67 6.10 71.98 0.44 1.11 16 3 O -0.38 -8.79 9.15 -129.98 -1.19 -9.98 16 4 C 0.08 1.55 1.82 29.85 0.05 1.60 16 5 H 0.12 1.48 7.02 -2.39 -0.02 1.46 16 6 C -0.14 -2.11 5.18 30.60 0.16 -1.95 16 7 C -0.15 -1.48 9.00 71.98 0.65 -0.83 16 8 C 0.50 13.82 7.10 87.65 0.62 14.44 16 9 O -0.58 -21.86 15.93 15.98 0.25 -21.60 16 10 N -0.60 -14.97 2.97 -818.04 -2.43 -17.39 16 11 C 0.11 1.94 5.27 86.51 0.46 2.39 16 12 C -0.11 -2.47 4.88 30.80 0.15 -2.32 16 13 C 0.11 3.47 0.68 -10.71 -0.01 3.47 16 14 C -0.14 -4.47 4.33 30.66 0.13 -4.33 16 15 C 0.13 3.75 6.18 86.36 0.53 4.29 16 16 C 0.12 4.86 5.39 86.34 0.47 5.33 16 17 N -0.61 -29.68 2.55 -697.59 -1.78 -31.46 16 18 C -0.26 -13.84 9.65 84.03 0.81 -13.03 16 19 H 0.07 3.47 7.87 -2.91 -0.02 3.45 16 20 C -0.05 -2.67 4.99 84.86 0.42 -2.24 16 21 N -0.93 -54.53 11.11 21.65 0.24 -54.29 16 22 Si 0.96 44.66 29.58 68.60 2.03 46.69 16 23 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 26 C 0.15 7.02 5.42 86.36 0.47 7.48 16 27 C 0.05 1.83 6.60 72.08 0.48 2.31 16 28 O -0.38 -12.63 9.00 -148.98 -1.34 -13.97 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.08 0.73 7.15 -2.39 -0.02 0.71 16 33 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.10 1.25 4.75 -2.39 -0.01 1.24 16 36 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.05 0.63 7.47 -2.39 -0.02 0.62 16 38 H 0.07 0.62 8.14 -2.39 -0.02 0.61 16 39 H 0.08 1.56 7.82 -2.39 -0.02 1.54 16 40 H 0.12 1.35 4.38 -2.38 -0.01 1.34 16 41 H 0.09 1.78 7.60 -2.39 -0.02 1.76 16 42 H 0.10 1.90 8.14 -2.39 -0.02 1.89 16 43 H 0.07 2.14 8.14 -2.38 -0.02 2.13 16 44 H 0.07 2.51 6.16 -2.39 -0.01 2.50 16 45 H 0.07 2.32 7.03 -2.39 -0.02 2.31 16 46 H 0.07 2.07 7.83 -2.39 -0.02 2.05 16 47 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.06 2.32 7.95 -2.38 -0.02 2.30 16 49 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 50 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 51 H 0.06 3.29 6.19 -2.38 -0.01 3.27 16 52 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 53 H 0.05 1.67 6.29 -2.39 -0.02 1.66 16 Total: -1.00 -72.67 395.98 3.25 -69.42 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.88 Total: 16.13 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: 6.57 Total: 16.44 kcal Atomic # 7 Polarization: -99.17 SS G_CDS: -3.96 Total: -103.13 kcal Atomic # 8 Polarization: -43.28 SS G_CDS: -2.28 Total: -45.55 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -72.67 3.25 -69.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717345358.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.811 kcal (2) G-P(sol) polarization free energy of solvation -72.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds